Lista de obras - Jyoti Choudhary - Dominio Público Uruguay

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes

A Knockout Screen of ApiAP2 Genes Reveals Networks of Interacting Transcriptional Regulators Controlling the Plasmodium Life Cycle

artículo científico publicado en 2017

A Plasmodium calcium-dependent protein kinase controls zygote development and transmission by translationally activating repressed mRNAs

artículo científico publicado en 2012

A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum

A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum.

artículo científico publicado en 2010

A conserved acetyl esterase domain targets diverse bacteriophages to the Vi capsular receptor of Salmonella enterica serovar Typhi

artículo científico publicado en 2010

A molecular quantitative trait locus map for osteoarthritis

artículo científico publicado en 2021

A new method to determine in vivo interactomes reveals binding of the Legionella pneumophila effector PieE to multiple rab GTPases

artículo científico publicado en 2014

A polygenic burden of rare disruptive mutations in schizophrenia

artículo científico publicado en 2014

A quantitative proteomic screen of the Campylobacter jejuni flagellar-dependent secretome

artículo científico publicado en 2016

A screen for combination therapies in BRAF/NRAS wild type melanoma identifies nilotinib plus MEK inhibitor as a synergistic combination

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

artículo científico publicado en 2009

APC15 drives the turnover of MCC-CDC20 to make the spindle assembly checkpoint responsive to kinetochore attachment

artículo científico publicado en 2011

Accurate and sensitive peptide identification with Mascot Percolator

artículo científico publicado en 2009

Activation of the Aryl Hydrocarbon Receptor Interferes with Early Embryonic Development

artículo científico publicado en 2017

An E2-ubiquitin thioester-driven approach to identify substrates modified with ubiquitin and ubiquitin-like molecules

artículo científico publicado en 2018

An E2-ubiquitin thioester-driven approach to identify substrates modified with ubiquitin and ubiquitin-like molecules

An expanded Oct4 interaction network: implications for stem cell biology, development, and disease

artículo científico publicado en 2010

Analysis of protein palmitoylation reveals a pervasive role in Plasmodium development and pathogenesis

artículo científico publicado en 2012

Analysis of protein phosphorylation on a proteome-scale

artículo científico publicado en 2007

Aneuploidy tolerance caused by BRG1 loss allows chromosome gains and recovery of fitness

artículo científico publicado en 2022

Applications of protein mass spectrometry in cell biology.

artículo científico publicado en 2000

Arc Requires PSD95 for Assembly into Postsynaptic Complexes Involved with Neural Dysfunction and Intelligence. ⬇️

artículo científico publicado en 2017

Assignment of Protein Interactions from Affinity Purification/Mass Spectrometry Data ⬇️

artículo científico publicado el 10 de febrero de 2012

Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination

scientific article published on 20 June 2019

Broad-Spectrum Regulation of Nonreceptor Tyrosine Kinases by the Bacterial ADP-Ribosyltransferase EspJ.

artículo científico publicado en 2018

C9orf72 arginine-rich dipeptide proteins interact with ribosomal proteins in vivo to induce a toxic translational arrest that is rescued by eIF1A

article

CRISPR activation screen in mice identifies novel membrane proteins enhancing pulmonary metastatic colonisation

scientific article published on 23 March 2021

Cell-type-specific visualisation and biochemical isolation of endogenous synaptic proteins in mice

scientific article published on 06 November 2019

Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells

artículo científico publicado en 2015

Characterization of the proteome, diseases and evolution of the human postsynaptic density.

artículo científico publicado en 2010

Citrobacter rodentium Subverts ATP Flux and Cholesterol Homeostasis in Intestinal Epithelial Cells In Vivo

artículo científico publicado en 2017

Citrobacter rodentium induces rapid and unique metabolic and inflammatory responses in mice suffering from severe disease

artículo científico publicado en 2019

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

artículo científico publicado en 2011

Clustering of Tir during enteropathogenic E. coli infection triggers calcium influx-dependent pyroptosis in intestinal epithelial cells

artículo científico publicado en 2020

Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins

artículo científico publicado en 2012

Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold

artículo científico publicado en 2008

Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation

artículo científico publicado en 2014

Coordinating cell cycle progression via cyclin specificity

artículo científico publicado en 2011

Crosstalk between PKA and PKG controls pH-dependent host cell egress of Toxoplasma gondii.

artículo científico publicado en 2017

Cyclic diGMP regulates production of sortase substrates of Clostridium difficile and their surface exposure through ZmpI protease-mediated cleavage

artículo científico

De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia.

artículo científico publicado en 2011

DecoyPyrat: Fast Non-redundant Hybrid Decoy Sequence Generation for Large Scale Proteomics

artículo científico publicado en 2016

Delineating the HMGB1 and HMGB2 interactome in prostate and ovary epithelial cells and its relationship with cancer.

artículo científico publicado en 2018

Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci

scientific article published on 19 September 2019

Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator

artículo científico publicado en 2012

Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity

artículo científico publicado en 2017

Evaluation of a Dual Isolation Width Acquisition Method for Isobaric Labeling Ratio Decompression

artículo científico publicado en 2019

Evolution of complexity in the zebrafish synapse proteome.

artículo científico publicado en 2017

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

artículo científico publicado en 2008

Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis

artículo científico publicado en 2017

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

artículo científico publicado en 2015

Faecal neutrophil elastase-antiprotease balance reflects colitis severity

scientific article published on 26 November 2019

Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes

artículo científico publicado en 2017

Flexible Data Analysis Pipeline for High-Confidence Proteogenomics

artículo científico publicado en 2016

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism

artículo científico publicado en 2014

GENCODE reference annotation for the human and mouse genomes

artículo científico publicado en 2019

Genome-wide analysis of the heat stress response in Zebu (Sahiwal) cattle

artículo científico publicado en 2013

Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells.

artículo científico

Global, site-specific analysis of neuronal protein S-acylation

artículo científico publicado en 2017

Human post-mortem synapse proteome integrity screening for proteomic studies of postsynaptic complexes

artículo científico publicado en 2014

Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis

artículo científico publicado en 2015

Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow

artículo científico publicado en 2016

Inhibition of somatosensory mechanotransduction by annexin A6

scientific article published on 19 June 2018

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis.

artículo científico publicado en 2017

Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever

artículo científico publicado en 2016

Interrogating the human genome using uninterpreted mass spectrometry data ⬇️

artículo científico publicado el 1 de mayo de 2001

Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection

scientific article published on 02 April 2019

Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality.

artículo científico publicado en 2019

Mapping multiprotein complexes by affinity purification and mass spectrometry

artículo científico publicado en 2008

Matching peptide mass spectra to EST and genomic DNA databases ⬇️

artículo científico publicado el 1 de octubre de 2001

Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome

artículo científico publicado en 2006

Molecular characterization of the Salmonella enterica serovar Typhi Vi-typing bacteriophage E1.

artículo científico publicado en 2008

Multiple short windows of calcium-dependent protein kinase 4 activity coordinate distinct cell cycle events during Plasmodium gametogenesis

artículo científico publicado en 2017

Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy

scientific article published on 23 July 2020

Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells

artículo científico publicado en 2017

Nbeal2 interacts with Dock7, Sec16a, and Vac14.

artículo científico publicado en 2017

Neurotransmitters drive combinatorial multistate postsynaptic density networks.

artículo científico publicado en 2009

Nuclear receptor binding protein 1 regulates intestinal progenitor cell homeostasis and tumour formation

artículo científico publicado en 2012

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

artículo científico publicado en 2016

Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner

scientific article published on 22 February 2019

Palmitoylation and palmitoyl-transferases in Plasmodium parasites

artículo científico

Paxillin associates with poly(A)-binding protein 1 at the dense endoplasmic reticulum and the leading edge of migrating cells

artículo científico publicado en 2001

Phosphoinositide metabolism links cGMP-dependent protein kinase G to essential Ca²⁺ signals at key decision points in the life cycle of malaria parasites

artículo científico publicado en 2014

Phosphoproteomic Analysis of the Mouse Brain Cytosol Reveals a Predominance of Protein Phosphorylation in Regions of Intrinsic Sequence Disorder

artículo científico publicado en 2008

Precision Medicine in Pancreatic Disease-Knowledge Gaps and Research Opportunities: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases Workshop

artículo científico publicado en 2019

Prmt5 is essential for early mouse development and acts in the cytoplasm to maintain ES cell pluripotency

artículo científico publicado en 2010

Proteomic analysis of NMDA receptor-adhesion protein signaling complexes

artículo científico publicado en 2000

Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome.

artículo científico publicado en 2017

Proteomic analysis of in vivo phosphorylated synaptic proteins.

artículo científico publicado en 2004

Proteomic and genomic characterization of highly infectious Clostridium difficile 630 spores

artículo científico publicado en 2009

Proteomic navigation using proximity-labeling

scientific article published on 04 April 2019

Proteomics characterization of abundant Golgi membrane proteins

artículo científico publicado en 2001

Proteomics in postgenomic neuroscience: the end of the beginning.

artículo científico publicado en 2004

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome

artículo científico publicado en 2011

Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations

artículo científico publicado en 2015

Quantitative proteomics reveals the basis for the biochemical specificity of the cell-cycle machinery

artículo científico publicado en 2011

Resolving Affinity Purified Protein Complexes by Blue Native PAGE and Protein Correlation Profiling

artículo científico publicado en 2017

Robust enrichment of phosphorylated species in complex mixtures by sequential protein and peptide metal-affinity chromatography and analysis by tandem mass spectrometry.

artículo científico publicado en 2005

Scoring and Validation of Tandem MS Peptide Identification Methods

article published in 2009

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

artículo científico publicado en 2011

Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines

scientific article published on 14 April 2020

Structural basis for the modulation of MRP2 activity by phosphorylation and drugs

artículo científico publicado en 2024

Study of Plasmodium falciparum DHHC palmitoyl transferases identifies a role for PfDHHC9 in gametocytogenesis

artículo científico publicado en 2016

Sub-minute Phosphoregulation of Cell Cycle Systems during Plasmodium Gamete Formation

artículo científico publicado en 2017

Sub-minute phosphoregulation of cell-cycle systems during Plasmodium gamete formation

SynGAP isoforms exert opposing effects on synaptic strength

artículo científico publicado en 2012

Targeted Feature Detection for Data-Dependent Shotgun Proteomics

artículo científico publicado en 2017

Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins

scientific journal article

The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation

The Citrobacter rodentium type III secretion system effector EspO affects mucosal damage repair and antimicrobial responses

scientific article published on 26 October 2018

The OMSSAPercolator: an automated tool to validate OMSSA results.

artículo científico publicado en 2014

The flagellotropic bacteriophage YSD1 targets Salmonella Typhi with a Chi-like protein tail fibre

artículo científico publicado en 2019

The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis

scientific article published on 04 October 2019

The three-dimensional structure and X-ray sequence reveal that trichomaglin is a novel S-like ribonuclease.

artículo científico publicado en 2004

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

artículo científico publicado en 2017

UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs

artículo científico publicado en 2018

Ubiquitylation of MLKL at lysine 219 positively regulates necroptosis-induced tissue injury and pathogen clearance

artículo científico publicado en 2021

Lista de obras de Jyoti Choudhary

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes

A Knockout Screen of ApiAP2 Genes Reveals Networks of Interacting Transcriptional Regulators Controlling the Plasmodium Life Cycle

A Plasmodium calcium-dependent protein kinase controls zygote development and transmission by translationally activating repressed mRNAs

A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum

A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum.

A conserved acetyl esterase domain targets diverse bacteriophages to the Vi capsular receptor of Salmonella enterica serovar Typhi

A molecular quantitative trait locus map for osteoarthritis

A new method to determine in vivo interactomes reveals binding of the Legionella pneumophila effector PieE to multiple rab GTPases

A polygenic burden of rare disruptive mutations in schizophrenia

A quantitative proteomic screen of the Campylobacter jejuni flagellar-dependent secretome

A screen for combination therapies in BRAF/NRAS wild type melanoma identifies nilotinib plus MEK inhibitor as a synergistic combination

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

APC15 drives the turnover of MCC-CDC20 to make the spindle assembly checkpoint responsive to kinetochore attachment

Accurate and sensitive peptide identification with Mascot Percolator

Activation of the Aryl Hydrocarbon Receptor Interferes with Early Embryonic Development

An E2-ubiquitin thioester-driven approach to identify substrates modified with ubiquitin and ubiquitin-like molecules

An E2-ubiquitin thioester-driven approach to identify substrates modified with ubiquitin and ubiquitin-like molecules

An expanded Oct4 interaction network: implications for stem cell biology, development, and disease

Analysis of protein palmitoylation reveals a pervasive role in Plasmodium development and pathogenesis

Analysis of protein phosphorylation on a proteome-scale

Aneuploidy tolerance caused by BRG1 loss allows chromosome gains and recovery of fitness

Applications of protein mass spectrometry in cell biology.

Arc Requires PSD95 for Assembly into Postsynaptic Complexes Involved with Neural Dysfunction and Intelligence. ⬇️

Assignment of Protein Interactions from Affinity Purification/Mass Spectrometry Data ⬇️

Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination

Broad-Spectrum Regulation of Nonreceptor Tyrosine Kinases by the Bacterial ADP-Ribosyltransferase EspJ.

C9orf72 arginine-rich dipeptide proteins interact with ribosomal proteins in vivo to induce a toxic translational arrest that is rescued by eIF1A

CRISPR activation screen in mice identifies novel membrane proteins enhancing pulmonary metastatic colonisation

Cell-type-specific visualisation and biochemical isolation of endogenous synaptic proteins in mice

Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells

Characterization of the proteome, diseases and evolution of the human postsynaptic density.

Citrobacter rodentium Subverts ATP Flux and Cholesterol Homeostasis in Intestinal Epithelial Cells In Vivo

Citrobacter rodentium induces rapid and unique metabolic and inflammatory responses in mice suffering from severe disease

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

Clustering of Tir during enteropathogenic E. coli infection triggers calcium influx-dependent pyroptosis in intestinal epithelial cells

Comparative study of human and mouse postsynaptic proteomes finds high compositional conservation and abundance differences for key synaptic proteins

Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold

Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation

Coordinating cell cycle progression via cyclin specificity

Crosstalk between PKA and PKG controls pH-dependent host cell egress of Toxoplasma gondii.

Cyclic diGMP regulates production of sortase substrates of Clostridium difficile and their surface exposure through ZmpI protease-mediated cleavage

De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia.

DecoyPyrat: Fast Non-redundant Hybrid Decoy Sequence Generation for Large Scale Proteomics

Delineating the HMGB1 and HMGB2 interactome in prostate and ovary epithelial cells and its relationship with cancer.

Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci

Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator

Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity

Evaluation of a Dual Isolation Width Acquisition Method for Isobaric Labeling Ratio Decompression

Evolution of complexity in the zebrafish synapse proteome.

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

Faecal neutrophil elastase-antiprotease balance reflects colitis severity

Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes

Flexible Data Analysis Pipeline for High-Confidence Proteogenomics

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism

GENCODE reference annotation for the human and mouse genomes

Genome-wide analysis of the heat stress response in Zebu (Sahiwal) cattle

Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells.

Global, site-specific analysis of neuronal protein S-acylation

Human post-mortem synapse proteome integrity screening for proteomic studies of postsynaptic complexes

Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis

Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow

Inhibition of somatosensory mechanotransduction by annexin A6

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis.

Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever

Interrogating the human genome using uninterpreted mass spectrometry data ⬇️

Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection

Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality.

Mapping multiprotein complexes by affinity purification and mass spectrometry

Matching peptide mass spectra to EST and genomic DNA databases ⬇️

Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome

Molecular characterization of the Salmonella enterica serovar Typhi Vi-typing bacteriophage E1.

Multiple short windows of calcium-dependent protein kinase 4 activity coordinate distinct cell cycle events during Plasmodium gametogenesis

Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy

Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells

Nbeal2 interacts with Dock7, Sec16a, and Vac14.

Neurotransmitters drive combinatorial multistate postsynaptic density networks.

Nuclear receptor binding protein 1 regulates intestinal progenitor cell homeostasis and tumour formation