Lista de obras - Torbjørn Rognes - Dominio Público Uruguay

A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures

artículo científico publicado en 2013

A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD.

artículo científico publicado en 2006

A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways

artículo científico publicado en 2010

A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis

artículo científico publicado en 2009

ALKBH1 is a histone H2A dioxygenase involved in neural differentiation

artículo científico publicado en 2012

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes

artículo científico publicado en 2012

Base removers and strand scissors: different strategies employed in base excision and strand incision at modified base residues in DNA.

artículo científico publicado en 2000

Biased distribution of DNA uptake sequences towards genome maintenance genes

artículo científico publicado en 2004

Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA

artículo científico publicado en 2000

Characterization of novel mutations in the catalytic domain of the PCSK9 gene

artículo científico publicado en 2008

Computational prediction of microRNAs encoded in viral and other genomes.

artículo científico publicado en 2006

Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes.

artículo científico publicado en 2006

Continuous and periodic expansion of CAG repeats in Huntington's disease R6/1 mice

artículo científico publicado en 2010

Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays

artículo científico publicado en 2009

DNA repair by bacterial AlkB proteins.

artículo científico publicado en 2003

DNA repair in mammalian cells: Base excision repair: the long and short of it.

scientific article published on March 2009

Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits

artículo científico publicado en 2013

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

artículo científico publicado en 2011

Genome dynamics in major bacterial pathogens.

artículo científico publicado en 2009

Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA

artículo científico publicado en 2002

Identification and characterization of novel mutations in the human gene encoding the catalytic subunit Calpha of protein kinase A (PKA).

artículo científico publicado en 2012

Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V

scientific journal article

Large-scale inference of the point mutational spectrum in human segmental duplications

artículo científico publicado en 2009

Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects

artículo científico publicado en 2010

Non-homologous functions of the AlkB homologs

artículo científico

Normalization of RNA-sequencing data from samples with varying mRNA levels

artículo científico publicado en 2014

NucBreak: Location of structural errors in a genome assembly by using paired-end Illumina reads

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads

artículo científico publicado en 2020

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.

artículo científico publicado en 2017

Open-Source Sequence Clustering Methods Improve the State Of the Art.

artículo científico publicado en 2016

Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites

artículo científico publicado en 1997

PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology

artículo científico publicado en 2005

ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.

artículo científico publicado en 2001

Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming

artículo científico publicado en 2005

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

artículo científico publicado en 2007

SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments

artículo científico publicado en 1998

Schizosaccharomyces pombe encodes a mutated AP endonuclease 1.

artículo científico publicado en 2010

Single transmembrane peptide DinQ modulates membrane-dependent activities

artículo científico publicado en 2013

Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors

artículo científico publicado en 2000

Slip slidin' away: a duodecennial review of targeted genes in mismatch repair deficient colorectal cancer

artículo científico publicado en 2007

Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats

artículo científico publicado en 2007

Swarm v2: highly-scalable and high-resolution amplicon clustering

artículo científico publicado en 2015

Swarm: robust and fast clustering method for amplicon-based studies

artículo científico publicado en 2014

The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

artículo científico publicado en 2016

The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative DNA damage in yeast

artículo científico publicado en 1999

The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage

artículo científico publicado en 2011

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts

artículo científico publicado en 2009

The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID

artículo científico publicado en 2020

Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides

artículo científico publicado en 2010

Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response

artículo científico publicado en 2013

Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway

artículo científico publicado en 2015

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.

artículo científico publicado en 2017

VSEARCH: a versatile open source tool for metagenomics

artículo científico publicado en 2016

cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data

artículo científico publicado en 2016

hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks

artículo científico publicado en 2023

Lista de obras de Torbjørn Rognes

A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures

A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD.

A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways

A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis

ALKBH1 is a histone H2A dioxygenase involved in neural differentiation

Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes

Base removers and strand scissors: different strategies employed in base excision and strand incision at modified base residues in DNA.

Biased distribution of DNA uptake sequences towards genome maintenance genes

Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA

Characterization of novel mutations in the catalytic domain of the PCSK9 gene

Computational prediction of microRNAs encoded in viral and other genomes.

Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes.

Continuous and periodic expansion of CAG repeats in Huntington's disease R6/1 mice

Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays

DNA repair by bacterial AlkB proteins.

DNA repair in mammalian cells: Base excision repair: the long and short of it.

Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

Genome dynamics in major bacterial pathogens.

Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA

Identification and characterization of novel mutations in the human gene encoding the catalytic subunit Calpha of protein kinase A (PKA).

Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V

Large-scale inference of the point mutational spectrum in human segmental duplications

Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects

Non-homologous functions of the AlkB homologs

Normalization of RNA-sequencing data from samples with varying mRNA levels

NucBreak: Location of structural errors in a genome assembly by using paired-end Illumina reads

NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads

NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.

Open-Source Sequence Clustering Methods Improve the State Of the Art.

Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites

PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology

ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.

Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments

Schizosaccharomyces pombe encodes a mutated AP endonuclease 1.

Single transmembrane peptide DinQ modulates membrane-dependent activities

Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors

Slip slidin' away: a duodecennial review of targeted genes in mismatch repair deficient colorectal cancer

Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats

Swarm v2: highly-scalable and high-resolution amplicon clustering

Swarm: robust and fast clustering method for amplicon-based studies

The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress

The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative DNA damage in yeast

The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage

The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts

The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID

Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides

Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response

Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.

VSEARCH: a versatile open source tool for metagenomics

cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data

hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks