Lista de obras - Dirk Benndorf - Dominio Público Uruguay

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer

scientific article published on 16 August 2019

A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane

artículo científico publicado en 2020

A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations

artículo científico publicado en 2006

A robust, cost-effective method for DNA, RNA and protein co-extraction from soil, other complex microbiomes and pure cultures

artículo científico publicado en 2019

Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

artículo científico publicado en 2010

Assimilatory detoxification of herbicides by Delftia acidovorans MC1: induction of two chlorocatechol 1,2-dioxygenases as a response to chemostress

artículo científico publicado en 2002

Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity.

artículo científico publicado en 2019

Challenges and perspectives of metaproteomic data analysis

artículo científico publicado en 2017

Chemicals and heat generate different protein patterns in Acinetobacter calcoaceticus

artículo científico publicado en 1997

Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome.

artículo científico publicado en 2015

Comparison of Influenza Virus Particle Purification Using Magnetic Sulfated Cellulose Particles with an Established Centrifugation Method for Analytics

artículo científico publicado en 2015

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

scientific article published on 20 May 2020

Continuous synthesis and excretion of the compatible solute ectoine by a transgenic, nonhalophilic bacterium.

artículo científico publicado en 2007

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

artículo científico publicado en 2021

Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry

Discovering Biomarkers for Non-Alcoholic Steatohepatitis Patients with and without Hepatocellular Carcinoma Using Fecal Metaproteomics

artículo científico publicado en 2022

FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics.

artículo científico publicado en 2017

Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities.

artículo científico

Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

artículo científico publicado en 2007

Identification of the flavin monooxygenase responsible for ipso substitution of alkyl and alkoxyphenols in Sphingomonas sp. TTNP3 and Sphingobium xenophagum Bayram.

artículo científico publicado en 2011

Impact of feeding and stirring regimes on the internal stratification of microbial communities in the fermenter of anaerobic digestion plants

artículo científico publicado en 2020

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments.

artículo científico publicado en 2009

Induction of heat shock proteins in response to primary alcohols in Acinetobacter calcoaceticus

artículo científico publicado en 1999

Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics

artículo científico publicado en 2004

Kinetics of chlorobenzene biodegradation under reduced oxygen levels.

artículo científico publicado en 2007

MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.

artículo científico publicado en 2017

Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics

artículo científico publicado en 2007

Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation

artículo científico publicado en 2013

Metaproteome analysis of sewage sludge from membrane bioreactors.

artículo científico publicado en 2011

Metaproteome analysis of the microbial communities in agricultural biogas plants.

artículo científico publicado en 2013

Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

article

Metaproteome analysis to determine the metabolically active part of a thermophilic microbial community producing biogas from agricultural biomass.

artículo científico publicado en 2012

Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarzinii

artículo científico publicado en 2016

Metaproteomics of activated sludge from a wastewater treatment plant - a pilot study.

artículo científico publicado en 2015

Metaproteomics of complex microbial communities in biogas plants

artículo científico publicado en 2015

Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspension.

artículo científico publicado en 2015

OP7, a novel influenza A virus defective interfering particle: production, purification, and animal experiments demonstrating antiviral potential

artículo científico publicado en 2020

Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community

artículo científico publicado en 2010

Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process.

artículo científico publicado en 2016

Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling

artículo científico publicado en 2009

Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress.

artículo científico publicado en 2001

Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different media

artículo científico publicado en 2013

Proteomic tracking and analysis of a bacterial mixed culture

artículo científico publicado en 2012

Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

artículo científico publicado en 2016

Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition.

artículo científico publicado en 2017

Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites

artículo científico publicado en 2006

Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene.

artículo científico publicado en 2007

Purification and characterization of NAD-dependent n-butanol dehydrogenase from solvent-tolerant n-butanol-degrading Enterobacter sp. VKGH12.

artículo científico publicado en 2008

Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3

artículo científico publicado en 2011

RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion

artículo científico publicado en 2019

Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

artículo científico publicado en 2018

Regulation of catabolic enzymes during long-term exposure of Delftia acidovorans MC1 to chlorophenoxy herbicides.

artículo científico publicado en 2004

Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome.

artículo científico publicado en 2010

SDS-PAGE fractionation to increase metaproteomic insight into the taxonomic and functional composition of microbial communities for biogas plant samples

artículo científico publicado en 2018

Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants

artículo científico publicado en 2013

Searching for a needle in a stack of needles: challenges in metaproteomics data analysis

artículo científico publicado en 2013

Substrate-Dependent Fermentation of Bamboo in Giant Panda Gut Microbiomes: Leaf Primarily to Ethanol and Pith to Lactate

scientific article published on 31 March 2020

The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12

artículo científico publicado en 2020

The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

artículo científico publicado en 2015

The Role of <i>Petrimonas mucosa</i> ING2-E5A<sup>T</sup> in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses

artículo científico publicado en 2020

The alkyl tert-butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway.

artículo científico publicado en 2006

The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation

artículo científico publicado en 2007

The two enantiospecific dichlorprop/alpha-ketoglutarate-dioxygenases from Delftia acidovorans MC1--protein and sequence data of RdpA and SdpA.

artículo científico publicado en 2002

Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440.

artículo científico publicado en 2003

Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach

artículo científico publicado en 2007

smORFer: a modular algorithm to detect small ORFs in prokaryotes

artículo científico publicado en 2021

Lista de obras de Dirk Benndorf

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer

A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane

A cytomic approach reveals population heterogeneity of Cupriavidus necator in response to harmful phenol concentrations

A robust, cost-effective method for DNA, RNA and protein co-extraction from soil, other complex microbiomes and pure cultures

Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

Assimilatory detoxification of herbicides by Delftia acidovorans MC1: induction of two chlorocatechol 1,2-dioxygenases as a response to chemostress

Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity.

Challenges and perspectives of metaproteomic data analysis

Chemicals and heat generate different protein patterns in Acinetobacter calcoaceticus

Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome.

Comparison of Influenza Virus Particle Purification Using Magnetic Sulfated Cellulose Particles with an Established Centrifugation Method for Analytics

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Continuous synthesis and excretion of the compatible solute ectoine by a transgenic, nonhalophilic bacterium.

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry

Discovering Biomarkers for Non-Alcoholic Steatohepatitis Patients with and without Hepatocellular Carcinoma Using Fecal Metaproteomics

FMNH2-dependent monooxygenases initiate catabolism of sulfonamides in Microbacterium sp. strain BR1 subsisting on sulfonamide antibiotics.

Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities.

Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

Identification of the flavin monooxygenase responsible for ipso substitution of alkyl and alkoxyphenols in Sphingomonas sp. TTNP3 and Sphingobium xenophagum Bayram.

Impact of feeding and stirring regimes on the internal stratification of microbial communities in the fermenter of anaerobic digestion plants

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments.

Induction of heat shock proteins in response to primary alcohols in Acinetobacter calcoaceticus

Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics

Kinetics of chlorobenzene biodegradation under reduced oxygen levels.

MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.

Mechanistic insights into the global response to phenol in the phenol-biodegrading strain Pseudomonas sp. M1 revealed by quantitative proteomics

Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation

Metaproteome analysis of sewage sludge from membrane bioreactors.

Metaproteome analysis of the microbial communities in agricultural biogas plants.

Metaproteome analysis reveals that syntrophy, competition, and phage-host interaction shape microbial communities in biogas plants

Metaproteome analysis to determine the metabolically active part of a thermophilic microbial community producing biogas from agricultural biomass.

Metaproteomics Applied to Activated Sludge for Industrial Wastewater Treatment Revealed a Dominant Methylotrophic Metabolism of Hyphomicrobium zavarzinii

Metaproteomics of activated sludge from a wastewater treatment plant - a pilot study.

Metaproteomics of complex microbial communities in biogas plants

Monitoring changes in proteome during stepwise adaptation of a MDCK cell line from adherence to growth in suspension.

OP7, a novel influenza A virus defective interfering particle: production, purification, and animal experiments demonstrating antiviral potential

Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community

Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process.

Prediction of flocculation ability of brewing yeast inoculates by flow cytometry, proteome analysis, and mRNA profiling

Protein synthesis patterns in Acinetobacter calcoaceticus induced by phenol and catechol show specificities of responses to chemostress.

Proteome analysis of virus-host cell interaction: rabies virus replication in Vero cells in two different media

Proteomic tracking and analysis of a bacterial mixed culture

Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition.

Pseudomonas putida KT2440 responds specifically to chlorophenoxy herbicides and their initial metabolites

Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene.

Purification and characterization of NAD-dependent n-butanol dehydrogenase from solvent-tolerant n-butanol-degrading Enterobacter sp. VKGH12.

Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3

RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion

Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

Regulation of catabolic enzymes during long-term exposure of Delftia acidovorans MC1 to chlorophenoxy herbicides.

Response of Pseudomonas putida KT2440 to phenol at the level of membrane proteome.

SDS-PAGE fractionation to increase metaproteomic insight into the taxonomic and functional composition of microbial communities for biogas plant samples

Sample prefractionation with liquid isoelectric focusing enables in depth microbial metaproteome analysis of mesophilic and thermophilic biogas plants

Searching for a needle in a stack of needles: challenges in metaproteomics data analysis

Substrate-Dependent Fermentation of Bamboo in Giant Panda Gut Microbiomes: Leaf Primarily to Ethanol and Pith to Lactate

The Impact of ackA, pta, and ackA-pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia coli K-12

The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

The Role of <i>Petrimonas mucosa</i> ING2-E5A<sup>T</sup> in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses

The alkyl tert-butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway.

The coprophilous mushroom Coprinus radians secretes a haloperoxidase that catalyzes aromatic peroxygenation

The two enantiospecific dichlorprop/alpha-ketoglutarate-dioxygenases from Delftia acidovorans MC1--protein and sequence data of RdpA and SdpA.

Use of proteomics and physiological characteristics to elucidate ecotoxic effects of methyl tert-butyl ether in Pseudomonas putida KT2440.

Vitellogenin cleavage products as indicators for toxic stress in zebra fish embryos: a proteomic approach

smORFer: a modular algorithm to detect small ORFs in prokaryotes