Lista de obras - Yves Moreau - Dominio Público Uruguay

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

artículo científico publicado en 2002

A Simple Genetic Algorithm for Biomarker Mining

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs

A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes

article

A guide to web tools to prioritize candidate genes

scientific article published on 21 March 2010

A human phenome-interactome network of protein complexes implicated in genetic disorders

artículo científico publicado en 2007

ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart

artículo científico publicado en 2018

Adaptive quality-based clustering of gene expression profiles.

artículo científico publicado en 2002

AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences

artículo científico publicado el 1 de enero de 2012

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

artículo científico publicado en 2016

An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH.

artículo científico publicado en 2009

An unbiased evaluation of gene prioritization tools

article

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

artículo científico publicado en 2012

Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes

artículo científico publicado en 2007

Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

artículo científico publicado en 2018

Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

scholarly article published in Nature Communications

Autosomal-dominant microtia linked to five tandem copies of a copy-number-variable region at chromosome 4p16

artículo científico publicado en 2008

BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome

artículo científico publicado en 2011

Bayesian applications of belief networks and multilayer perceptrons for ovarian tumor classification with rejection

artículo científico publicado en 2003

Beegle: from literature mining to disease-gene discovery

artículo científico publicado en 2015

Biclustering microarray data by Gibbs sampling

artículo científico publicado en 2003

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

artículo científico publicado en 2005

Bioinformatics: Organisms from Venus, Technology from Jupiter, Algorithms from Mars

Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases

artículo científico publicado en 2010

Breakage-fusion-bridge cycles leading to inv dup del occur in human cleavage stage embryos

artículo científico publicado en 2011

Candidate gene prioritization by network analysis of differential expression using machine learning approaches.

artículo científico publicado en 2010

Candidate gene prioritization with Endeavour.

artículo científico

Chromosome Instability Is Common in Human Cleavage-Stage Embryos

Chromosome instability is common in human cleavage-stage embryos

artículo científico publicado en 2009

Chronic lymphocytic leukemia and prolymphocytic leukemia with MYC translocations: a subgroup with an aggressive disease course

scientific article published on 30 December 2011

Collaboratively charting the gene-to-phenotype network of human congenital heart defects

artículo científico publicado en 2010

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

artículo científico publicado en 2003

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.

artículo científico

Comprehensive analysis of the base composition around the transcription start site in Metazoa

artículo científico publicado en 2004

Computational detection of cis -regulatory modules.

artículo científico publicado en 2003

Computational tools for prioritizing candidate genes: boosting disease gene discovery ⬇️

artículo científico publicado el 3 de julio de 2012

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

artículo científico publicado en 2013

Concurrent whole-genome haplotyping and copy-number profiling of single cells

artículo científico publicado en 2015

Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1.

artículo científico publicado en 2012

Current cancer driver variant predictors learn to recognize driver genes instead of functional variants

artículo científico publicado en 2021

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources

artículo científico publicado en 2009

DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects

artículo científico publicado en 2015

Detecting cis-regulatory binding sites for cooperatively binding proteins

artículo científico publicado en 2008

Detection of novel 3' untranslated region extensions with 3' expression microarrays

artículo científico publicado en 2010

ENDEAVOUR update: a web resource for gene prioritization in multiple species

artículo científico publicado en 2008

Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome

artículo científico publicado en 2014

Finding the targets of a drug by integration of gene expression data with a protein interaction network

artículo científico publicado en 2013

GENESTAT: an information portal for design and analysis of genetic association studies

artículo científico publicado en 2009

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

scientific article published on 01 June 2019

GRU-ODE-Bayes: Continuous Modeling of Sporadically-Observed Time Series ⬇️

Galahad: a web server for drug effect analysis from gene expression

artículo científico publicado en 2015

Gene prioritization and clustering by multi-view text mining

artículo científico publicado en 2010

Gene prioritization through genomic data fusion

artículo científico publicado en 2006

Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information.

artículo científico publicado en 2018

Gene profiling of hippocampal neuronal culture.

artículo científico publicado en 2003

Genome-Wide Copy Number Variation Scan Identifies Complement Component C4 as Novel Susceptibility Gene for Crohn's Disease

artículo científico publicado en 2015

Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains

artículo científico publicado en 2013

Haploinsufficiency of TAB2 causes congenital heart defects in humans

artículo científico publicado en 2010

Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome

artículo científico publicado en 2012

INCLUSive: A web portal and service registry for microarray and regulatory sequence analysis

artículo científico publicado en 2003

INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling

artículo científico publicado en 2002

Identification of conserved modes of expression profiles during hippocampal development and neuronal differentiation in vitro.

artículo científico publicado en 2006

Importing MAGE-ML format microarray data into BioConductor

artículo científico publicado en 2004

Improved detection of chromosomal abnormalities in chronic lymphocytic leukemia by conventional cytogenetics using CpG oligonucleotide and interleukin-2 stimulation: A Belgian multicentric study.

artículo científico publicado en 2009

In vitro screening of embryos by whole-genome sequencing: now, in the future or never?

artículo científico publicado en 2014

Insight into the protein solubility driving forces with neural attention

artículo científico publicado en 2020

Integrating computational biology and forward genetics in Drosophila

artículo científico publicado en 2009

Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores

artículo científico publicado en 2012

Interphase fluorescence in situ hybridization on selected plasma cells is superior in the detection of cytogenetic aberrations in plasma cell dyscrasia

artículo científico publicado en 2010

Kernel-based data fusion for gene prioritization

artículo científico publicado en 2007

L2-norm multiple kernel learning and its application to biomedical data fusion.

artículo científico publicado en 2010

Large-scale benchmark of Endeavour using MetaCore maps

artículo científico publicado en 2010

Mapping biomedical concepts onto the human genome by mining literature on chromosomal aberrations

artículo científico publicado en 2007

Meander: visually exploring the structural variome using space-filling curves

artículo científico publicado en 2013

Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development.

artículo científico publicado en 2016

Microarray analysis of copy number variation in single cells.

artículo científico publicado en 2012

Microarray screening for target genes of the proto-oncogene PLAG1.

artículo científico publicado en 2004

ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

artículo científico publicado en 2008

Mutual inhibition among postmitotic neurons regulates robustness of brain wiring in Drosophila

artículo científico publicado en 2013

NGS-Logistics: data infrastructure for efficient analysis of NGS sequence variants across multiple centers.

artículo científico publicado en 2015

NGS-Logistics: federated analysis of NGS sequence variants across multiple locations

artículo científico publicado en 2014

Network analysis of differential expression for the identification of disease-causing genes

artículo científico publicado en 2009

O12: Text Mining for Constitutional Cytogenetics

Optimized data fusion for K-means Laplacian clustering

artículo científico publicado en 2010

Optimized data fusion for kernel k-means clustering

artículo científico publicado en 2012

PINTA: a web server for network-based gene prioritization from expression data

artículo científico publicado en 2011

Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.

artículo científico publicado en 2017

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

artículo científico publicado en 2002

Positional gene enrichment analysis of gene sets for high-resolution identification of overrepresented chromosomal regions

artículo científico

Predicting receptor-ligand pairs through kernel learning

artículo científico publicado en 2011

Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks.

artículo científico publicado en 2006

Problems with the nested granularity of feature domains in bioinformatics: the eXtasy case

artículo científico publicado en 2015

Protein fold recognition using geometric kernel data fusion

artículo científico publicado en 2014

Query-driven module discovery in microarray data.

artículo científico publicado en 2007

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings

artículo científico publicado en 2012

Single-cell chromosomal imbalances detection by array CGH

scientific article published on 12 May 2006

Single-cell copy number variation detection.

artículo científico publicado en 2011

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

artículo científico publicado en 2013

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

artículo científico publicado en 2005

TXTGate: profiling gene groups with text-based information

artículo científico publicado en 2004

The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models

scientific article published on January 2013

Toucan: deciphering the cis-regulatory logic of coregulated genes.

artículo científico publicado en 2003

Towards Better Prioritization of Epigenetically Modified DNA Regions

Towards practical privacy-preserving genome-wide association study

artículo científico publicado en 2018

Unraveling genomic variation from next generation sequencing data

artículo científico publicado en 2013

Using literature and data to learn Bayesian networks as clinical models of ovarian tumors

artículo científico publicado en 2004

Using ribosomal protein genes as reference: a tale of caution

artículo científico publicado en 2008

YTPdb: a wiki database of yeast membrane transporters

artículo científico publicado en 2010

Yves Moreau and Jaap Heringa, on behalf of the ECCB10 organizing and steering committees ⬇️

artículo científico publicado el 15 de septiembre de 2010

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

artículo científico publicado en 2005

eXtasy: variant prioritization by genomic data fusion.

artículo científico publicado en 2013

Lista de obras de Yves Moreau

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

A Simple Genetic Algorithm for Biomarker Mining

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs

A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes

A guide to web tools to prioritize candidate genes

A human phenome-interactome network of protein complexes implicated in genetic disorders

ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart

Adaptive quality-based clustering of gene expression profiles.

AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH.

An unbiased evaluation of gene prioritization tools

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes

Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors

Autosomal-dominant microtia linked to five tandem copies of a copy-number-variable region at chromosome 4p16

BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome

Bayesian applications of belief networks and multilayer perceptrons for ovarian tumor classification with rejection

Beegle: from literature mining to disease-gene discovery

Biclustering microarray data by Gibbs sampling

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

Bioinformatics: Organisms from Venus, Technology from Jupiter, Algorithms from Mars

Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases

Breakage-fusion-bridge cycles leading to inv dup del occur in human cleavage stage embryos

Candidate gene prioritization by network analysis of differential expression using machine learning approaches.

Candidate gene prioritization with Endeavour.

Chromosome Instability Is Common in Human Cleavage-Stage Embryos

Chromosome instability is common in human cleavage-stage embryos

Chronic lymphocytic leukemia and prolymphocytic leukemia with MYC translocations: a subgroup with an aggressive disease course

Collaboratively charting the gene-to-phenotype network of human congenital heart defects

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.

Comprehensive analysis of the base composition around the transcription start site in Metazoa

Computational detection of cis -regulatory modules.

Computational tools for prioritizing candidate genes: boosting disease gene discovery ⬇️

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

Concurrent whole-genome haplotyping and copy-number profiling of single cells

Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1.

Current cancer driver variant predictors learn to recognize driver genes instead of functional variants

DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources

DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects

Detecting cis-regulatory binding sites for cooperatively binding proteins

Detection of novel 3' untranslated region extensions with 3' expression microarrays

ENDEAVOUR update: a web resource for gene prioritization in multiple species

Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome

Finding the targets of a drug by integration of gene expression data with a protein interaction network

GENESTAT: an information portal for design and analysis of genetic association studies

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

GRU-ODE-Bayes: Continuous Modeling of Sporadically-Observed Time Series ⬇️

Galahad: a web server for drug effect analysis from gene expression

Gene prioritization and clustering by multi-view text mining

Gene prioritization through genomic data fusion

Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information.

Gene profiling of hippocampal neuronal culture.

Genome-Wide Copy Number Variation Scan Identifies Complement Component C4 as Novel Susceptibility Gene for Crohn's Disease

Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains

Haploinsufficiency of TAB2 causes congenital heart defects in humans

Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome

INCLUSive: A web portal and service registry for microarray and regulatory sequence analysis

INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling

Identification of conserved modes of expression profiles during hippocampal development and neuronal differentiation in vitro.

Importing MAGE-ML format microarray data into BioConductor

Improved detection of chromosomal abnormalities in chronic lymphocytic leukemia by conventional cytogenetics using CpG oligonucleotide and interleukin-2 stimulation: A Belgian multicentric study.

In vitro screening of embryos by whole-genome sequencing: now, in the future or never?

Insight into the protein solubility driving forces with neural attention

Integrating computational biology and forward genetics in Drosophila

Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores

Interphase fluorescence in situ hybridization on selected plasma cells is superior in the detection of cytogenetic aberrations in plasma cell dyscrasia

Kernel-based data fusion for gene prioritization

L2-norm multiple kernel learning and its application to biomedical data fusion.

Large-scale benchmark of Endeavour using MetaCore maps

Mapping biomedical concepts onto the human genome by mining literature on chromosomal aberrations

Meander: visually exploring the structural variome using space-filling curves

Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development.

Microarray analysis of copy number variation in single cells.

Microarray screening for target genes of the proto-oncogene PLAG1.

ModuleMiner - improved computational detection of cis-regulatory modules: are there different modes of gene regulation in embryonic development and adult tissues?

Mutual inhibition among postmitotic neurons regulates robustness of brain wiring in Drosophila