Lista de obras - Alexander Lachmann - Dominio Público Uruguay

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

artículo científico publicado en 2016

BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud

scholarly article by Denis Torre et al published 28 November 2018 in Cell systems

BioJupies: Automated Generation of Interactive Notebooks for RNA-seq Data Analysis in the Cloud

scholarly article published 20 June 2018

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

artículo científico publicado en 2019

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

artículo científico publicado en 2010

Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming.

artículo científico publicado en 2018

Correcting under-reported COVID-19 case numbers

scientific article (preprint)

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

artículo científico publicado en 2018

Detection and removal of spatial bias in multiwell assays

artículo científico publicado en 2016

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

scientific article published on 19 February 2022

Elysium: RNA-seq Alignment in the Cloud

scholarly article published 2 August 2018

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

artículo científico publicado en 2016

EnrichrBot: Twitter Bot Tracking Tweets About Human Genes

artículo científico publicado en 2020

FNV: light-weight flash-based network and pathway viewer

artículo científico publicado en 2011

Functional characterization of somatic mutations in cancer using network-based inference of protein activity

scientific article published on 20 June 2016

GATE: software for the analysis and visualization of high-dimensional time series expression data

artículo científico publicado en 2009

Geneshot: search engine for ranking genes from arbitrary text queries

artículo científico publicado en 2019

Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

artículo científico publicado en 2010

Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network

article published in 2010

Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks

artículo científico publicado en 2018

Interoperable RNA-Seq analysis in the cloud

artículo científico publicado en 2020

KEA: kinase enrichment analysis

artículo científico publicado en 2009

L1000FWD: Fireworks visualization of drug-induced transcriptomic signatures.

artículo científico publicado en 2018

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

artículo científico publicado en 2020

Lists2Networks: integrated analysis of gene/protein lists

artículo científico publicado en 2010

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

scholarly article published 14 September 2017

Massive mining of publicly available RNA-seq data from human and mouse

artículo científico publicado en 2018

Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment

artículo científico publicado en 2020

Mining data and metadata from the gene expression omnibus

article

Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses

scientific article published on 14 September 2020

Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration

artículo científico publicado en 2016

Receptor heteromerization expands the repertoire of cannabinoid signaling in rodent neurons

artículo científico publicado en 2012

SigCom LINCS: data and metadata search engine for a million gene expression signatures

artículo científico publicado en 2022

Systematic, network-based characterization of therapeutic target inhibitors.

artículo científico publicado en 2017

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

scientific article published on 08 April 2020

Systems-level dynamic analyses of fate change in murine embryonic stem cells

artículo científico publicado en 2009

The COVID-19 Drug and Gene Set Library

scientific article published on 25 July 2020

The COVID-19 Gene and Drug Set Library

artículo científico publicado en 2020

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

artículo científico publicado en 2017

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

artículo científico publicado en 2018

modEnrichr: a suite of gene set enrichment analysis tools for model organisms

scientific article published on 01 July 2019

Lista de obras de Alexander Lachmann

ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information

BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud

BioJupies: Automated Generation of Interactive Notebooks for RNA-seq Data Analysis in the Cloud

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

Cooperative Transcription Factor Induction Mediates Hemogenic Reprogramming.

Correcting under-reported COVID-19 case numbers

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

Detection and removal of spatial bias in multiwell assays

DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

Elysium: RNA-seq Alignment in the Cloud

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

EnrichrBot: Twitter Bot Tracking Tweets About Human Genes

FNV: light-weight flash-based network and pathway viewer

Functional characterization of somatic mutations in cancer using network-based inference of protein activity

GATE: software for the analysis and visualization of high-dimensional time series expression data

Geneshot: search engine for ranking genes from arbitrary text queries

Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).

Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network

Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks

Interoperable RNA-Seq analysis in the cloud

KEA: kinase enrichment analysis

L1000FWD: Fireworks visualization of drug-induced transcriptomic signatures.

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

Lists2Networks: integrated analysis of gene/protein lists

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse

Massive mining of publicly available RNA-seq data from human and mouse

Memory of Divisional History Directs the Continuous Process of Primitive Hematopoietic Lineage Commitment

Mining data and metadata from the gene expression omnibus

Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses

Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration

Receptor heteromerization expands the repertoire of cannabinoid signaling in rodent neurons

SigCom LINCS: data and metadata search engine for a million gene expression signatures

Systematic, network-based characterization of therapeutic target inhibitors.

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

Systems-level dynamic analyses of fate change in murine embryonic stem cells

The COVID-19 Drug and Gene Set Library

The COVID-19 Gene and Drug Set Library

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

modEnrichr: a suite of gene set enrichment analysis tools for model organisms