Lista de obras - João Paulo Gomes - Dominio Público Uruguay

A Multi-Component Prime-Boost Vaccination Regimen with a Consensus MOMP Antigen Enhances Chlamydia trachomatis Clearance

artículo científico publicado en 2016

A large outbreak of Legionnaires’ Disease in an industrial town in Portugal

article

A retrospective cross-sectional quantitative molecular approach in biological samples from patients with syphilis.

artículo científico publicado en 2017

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

artículo científico publicado en 2023

Adaptive Evolution of the Chlamydia trachomatis Dominant Antigen Reveals Distinct Evolutionary Scenarios for B- and T-cell Epitopes: Worldwide Survey ⬇️

artículo científico publicado el 5 de octubre de 2010

Allelic diversity among Helicobacter pylori outer membrane protein genes homB and homA generated by recombination

artículo científico publicado en 2010

Aminobenzylated 4-Nitrophenols as Antibacterial Agents Obtained from 5-Nitrosalicylaldehyde through a Petasis Borono-Mannich Reaction

scientific article published on 29 November 2018

An integrated strategy to identify key genes in almond adventitious shoot regeneration.

artículo científico publicado en 2009

Assessment of the load and transcriptional dynamics of Chlamydia trachomatis plasmid according to strains' tissue tropism.

artículo científico publicado en 2013

Bioinformatic Analysis of Chlamydia trachomatis Polymorphic Membrane Proteins PmpE, PmpF, PmpG and PmpH as Potential Vaccine Antigens

artículo científico publicado en 2015

Burkholderia pseudomallei: First case of melioidosis in Portugal

artículo científico publicado en 2016

Candida auris in Intensive Care Setting: The First Case Reported in Portugal

artículo científico publicado en 2023

Capsular Type, Sequence Type and Microbial Resistance Factors Impact on DNase Activity of Streptococcus agalactiae Strains from Human and Bovine Origin

scientific article published on 11 December 2018

Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors

artículo científico publicado en 2015

Chlamydia trachomatis diversity viewed as a tissue-specific coevolutionary arms race

artículo científico publicado en 2008

Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature

scientific article published on 01 November 2019

Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains

artículo científico publicado en 2007

Complete Genome Sequence of Chlamydia trachomatis Ocular Serovar C Strain TW-3.

artículo científico publicado en 2014

Congenital neurosyphilis - authors' reply

artículo científico publicado en 2013

Construction of improved tools for protein localization studies in Streptococcus pneumoniae

artículo científico publicado en 2013

Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis

artículo científico publicado en 2005

Could we miss congenital neurosyphilis?

artículo científico publicado en 2012

CteG is a Chlamydia trachomatis effector protein that associates with the Golgi complex of infected host cells

artículo científico publicado en 2019

Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation.

scientific article published on 03 March 2015

Differential Role of the T6SS in Acinetobacter baumannii Virulence

artículo científico publicado en 2015

Directional evolution of Chlamydia trachomatis towards niche-specific adaptation.

artículo científico publicado en 2012

Dissecting whole-genome sequencing-based online tools for predicting resistance in Mycobacterium tuberculosis: can we use them for clinical decision guidance?

artículo científico publicado en 2018

Estimated number of lives directly saved by COVID-19 vaccination programs in the WHO European Region, December 2020 to March 2023

Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis

article

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

artículo científico publicado en 2006

Evolution, phylogeny, and molecular epidemiology of Chlamydia.

artículo científico publicado en 2014

Evolutionary dynamics of ompA, the gene encoding the Chlamydia trachomatis key antigen

artículo científico publicado en 2009

EzrA contributes to the regulation of cell size in Staphylococcus aureus

artículo científico publicado en 2011

Genetic determinants of high-level oxacillin resistance in MRSA.

artículo científico publicado en 2018

Genital infection by Chlamydia trachomatis in Lisbon: prevalence and risk markers.

artículo científico publicado en 2002

Genome Sequencing of 10 Helicobacter pylori Pediatric Strains from Patients with Nonulcer Dyspepsia and Peptic Ulcer Disease.

artículo científico publicado en 2015

Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation

artículo científico publicado en 2016

Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins

scientific article published on 16 February 2017

Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004-2009).

artículo científico publicado en 2010

Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars.

scientific article published on 26 July 2017

Helicobacter pullorum isolated from fresh chicken meat: antibiotic resistance and genomic traits of an emerging foodborne pathogen

artículo científico publicado en 2015

High-level tetracycline resistant Neisseria gonorrhoeae isolated in Portugal

artículo científico publicado el 1 de mayo de 1997

INSaFLU: an automated open web-based bioinformatics suite "from-reads" for influenza whole-genome-sequencing-based surveillance.

artículo científico publicado en 2018

Identification of type III secretion substrates of Chlamydia trachomatis using Yersinia enterocolitica as a heterologous system

artículo científico publicado en 2014

Imipenem Resistance in Clostridium difficile Ribotype 017, Portugal.

artículo científico publicado en 2018

Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups.

artículo científico publicado en 2005

Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis

artículo científico publicado en 2012

In Vitro Activity of Quaternary Ammonium Surfactants against Streptococcal, Chlamydial, and Gonococcal Infective Agents.

artículo científico publicado en 2016

In silico scrutiny of genes revealing phylogenetic congruence with clinical prevalence or tropism properties of Chlamydia trachomatis strains

artículo científico publicado en 2014

Insights into the population structure and pan-genome of Haemophilus influenzae

artículo científico publicado en 2018

Insights on Klebsiella pneumoniae Biofilms Assembled on Different Surfaces Using Phenotypic and Genotypic Approaches

artículo científico publicado en 2017

Isolation and molecular characterization of Toxoplasma gondii isolated from pigeons and stray cats in Lisbon, Portugal

artículo científico publicado en 2014

Legionella pneumophila strain associated with the first evidence of person-to-person transmission of Legionnaires' disease: a unique mosaic genetic backbone

artículo científico publicado en 2016

Lung abscess due to Neisseria meningitidis serogroup X-unexpected virulence of a commensal resulting from putative serogroup B capsular switching

artículo científico publicado en 2020

Lymphogranuloma venereum in Portugal: unusual events and new variants during 2007.

artículo científico publicado en 2009

Molecular and virulence characterization of Toxoplasma gondii strains isolated from humans in Portugal

artículo científico publicado en 2017

Molecular characterization and antimicrobial susceptibility profiles in Streptococcus agalactiae colonizing strains: association of erythromycin resistance with subtype III-1 genetic clone family.

artículo científico publicado en 2010

Molecular epidemiology of group B streptococcal meningitis in children beyond the neonatal period from Angola.

artículo científico publicado en 2011

Molecular typing of treponema pallidum clinical strains from Lisbon, Portugal

artículo científico publicado en 2008

Multidrug-Resistant Salmonella enterica Serovar Rissen Clusters Detected in Azores Archipelago, Portugal

artículo científico publicado en 2019

Multiomics Assessment of Gene Expression in a Clinical Strain of CTX-M-15-Producing ST131 Escherichia coli

article

Multiomics Substrates of Resistance to Emerging Pathogens? Transcriptome and Proteome Profile of a Vancomycin-Resistant Enterococcus faecalis Clinical Strain

artículo científico publicado en 2020

Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution

artículo científico publicado en 2022

Nontuberculous Mycobacteria Persistence in a Cell Model Mimicking Alveolar Macrophages.

artículo científico publicado en 2019

Optimization of fluorescent tools for cell biology studies in Gram-positive bacteria

artículo científico publicado en 2014

Parasite communities in stray cat populations from Lisbon, Portugal.

artículo científico publicado en 2013

Partner notification for chlamydia trachomatis urogenital infections: eight years of patient referral experience in the major Portuguese sexually transmitted infections clinic, 2000-07.

artículo científico publicado en 2011

Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

artículo científico publicado en 2022

Phenotypic signatures and genetic determinants of oxacillin tolerance in a laboratory mutant of Staphylococcus aureus

artículo científico publicado en 2018

Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

artículo científico publicado en 2022

Polymorphisms in inc proteins and differential expression of inc genes among Chlamydia trachomatis strains correlate with invasiveness and tropism of lymphogranuloma venereum isolates

artículo científico publicado en 2012

Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism.

artículo científico publicado en 2006

Pooling urine samples for PCR screening of C. trachomatis urogenital infection in women.

artículo científico publicado en 2001

Predicting phenotype and emerging strains among Chlamydia trachomatis infections.

artículo científico publicado en 2009

Quaternary ammonium surfactant structure determines selective toxicity towards bacteria: mechanisms of action and clinical implications in antibacterial prophylaxis

artículo científico publicado en 2015

Sensitivity evaluation of the Gen-Probe AMP-CT assay by pooling urine samples for the screening of Chlamydia trachomatis urogenital infection.

artículo científico publicado en 2002

The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen

artículo científico publicado en 2017

The expression of Helicobacter pylori tfs plasticity zone cluster is regulated by pH and adherence, and its composition is associated with differential gastric IL-8 secretion

artículo científico publicado en 2017

The inhibition of the apoptosis pathway by the Coxiella burnetii effector protein CaeA requires the EK repetition motif, but is independent of survivin

artículo científico publicado en 2016

Towards a rapid sequencing-based molecular surveillance and mosaicism investigation of Toxoplasma gondii

scientific article published on 02 January 2020

Toxoplasma gondii seroprevalence in the Portuguese population: comparison of three cross-sectional studies spanning three decades

scientific article published on 05 October 2016

Virulence and antibiotic resistance plasticity of Arcobacter butzleri: Insights on the genomic diversity of an emerging human pathogen

artículo científico publicado en 2020

Lista de obras de João Paulo Gomes

A Multi-Component Prime-Boost Vaccination Regimen with a Consensus MOMP Antigen Enhances Chlamydia trachomatis Clearance

A large outbreak of Legionnaires’ Disease in an industrial town in Portugal

A retrospective cross-sectional quantitative molecular approach in biological samples from patients with syphilis.

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

Adaptive Evolution of the Chlamydia trachomatis Dominant Antigen Reveals Distinct Evolutionary Scenarios for B- and T-cell Epitopes: Worldwide Survey ⬇️

Allelic diversity among Helicobacter pylori outer membrane protein genes homB and homA generated by recombination

Aminobenzylated 4-Nitrophenols as Antibacterial Agents Obtained from 5-Nitrosalicylaldehyde through a Petasis Borono-Mannich Reaction

An integrated strategy to identify key genes in almond adventitious shoot regeneration.

Assessment of the load and transcriptional dynamics of Chlamydia trachomatis plasmid according to strains' tissue tropism.

Bioinformatic Analysis of Chlamydia trachomatis Polymorphic Membrane Proteins PmpE, PmpF, PmpG and PmpH as Potential Vaccine Antigens

Burkholderia pseudomallei: First case of melioidosis in Portugal

Candida auris in Intensive Care Setting: The First Case Reported in Portugal

Capsular Type, Sequence Type and Microbial Resistance Factors Impact on DNase Activity of Streptococcus agalactiae Strains from Human and Bovine Origin

Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors

Chlamydia trachomatis diversity viewed as a tissue-specific coevolutionary arms race

Chlamydia trachomatis: when the virulence-associated genome backbone imports a prevalence-associated major antigen signature

Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains

Complete Genome Sequence of Chlamydia trachomatis Ocular Serovar C Strain TW-3.

Congenital neurosyphilis - authors' reply

Construction of improved tools for protein localization studies in Streptococcus pneumoniae

Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis

Could we miss congenital neurosyphilis?

CteG is a Chlamydia trachomatis effector protein that associates with the Golgi complex of infected host cells

Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation.

Differential Role of the T6SS in Acinetobacter baumannii Virulence

Directional evolution of Chlamydia trachomatis towards niche-specific adaptation.

Dissecting whole-genome sequencing-based online tools for predicting resistance in Mycobacterium tuberculosis: can we use them for clinical decision guidance?

Estimated number of lives directly saved by COVID-19 vaccination programs in the WHO European Region, December 2020 to March 2023

Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

Evolution, phylogeny, and molecular epidemiology of Chlamydia.

Evolutionary dynamics of ompA, the gene encoding the Chlamydia trachomatis key antigen

EzrA contributes to the regulation of cell size in Staphylococcus aureus

Genetic determinants of high-level oxacillin resistance in MRSA.

Genital infection by Chlamydia trachomatis in Lisbon: prevalence and risk markers.

Genome Sequencing of 10 Helicobacter pylori Pediatric Strains from Patients with Nonulcer Dyspepsia and Peptic Ulcer Disease.

Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation

Genomic structure and insertion sites of Helicobacter pylori prophages from various geographical origins

Genotypes and antimicrobial-resistant phenotypes of Neisseria gonorrhoeae in Portugal (2004-2009).

Global survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars.

Helicobacter pullorum isolated from fresh chicken meat: antibiotic resistance and genomic traits of an emerging foodborne pathogen

High-level tetracycline resistant Neisseria gonorrhoeae isolated in Portugal

INSaFLU: an automated open web-based bioinformatics suite "from-reads" for influenza whole-genome-sequencing-based surveillance.

Identification of type III secretion substrates of Chlamydia trachomatis using Yersinia enterocolitica as a heterologous system

Imipenem Resistance in Clostridium difficile Ribotype 017, Portugal.

Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups.

Impact of loci nature on estimating recombination and mutation rates in Chlamydia trachomatis

In Vitro Activity of Quaternary Ammonium Surfactants against Streptococcal, Chlamydial, and Gonococcal Infective Agents.

In silico scrutiny of genes revealing phylogenetic congruence with clinical prevalence or tropism properties of Chlamydia trachomatis strains

Insights into the population structure and pan-genome of Haemophilus influenzae

Insights on Klebsiella pneumoniae Biofilms Assembled on Different Surfaces Using Phenotypic and Genotypic Approaches

Isolation and molecular characterization of Toxoplasma gondii isolated from pigeons and stray cats in Lisbon, Portugal

Legionella pneumophila strain associated with the first evidence of person-to-person transmission of Legionnaires' disease: a unique mosaic genetic backbone

Lung abscess due to Neisseria meningitidis serogroup X-unexpected virulence of a commensal resulting from putative serogroup B capsular switching

Lymphogranuloma venereum in Portugal: unusual events and new variants during 2007.

Molecular and virulence characterization of Toxoplasma gondii strains isolated from humans in Portugal

Molecular characterization and antimicrobial susceptibility profiles in Streptococcus agalactiae colonizing strains: association of erythromycin resistance with subtype III-1 genetic clone family.

Molecular epidemiology of group B streptococcal meningitis in children beyond the neonatal period from Angola.

Molecular typing of treponema pallidum clinical strains from Lisbon, Portugal

Multidrug-Resistant Salmonella enterica Serovar Rissen Clusters Detected in Azores Archipelago, Portugal

Multiomics Assessment of Gene Expression in a Clinical Strain of CTX-M-15-Producing ST131 Escherichia coli

Multiomics Substrates of Resistance to Emerging Pathogens? Transcriptome and Proteome Profile of a Vancomycin-Resistant Enterococcus faecalis Clinical Strain

Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution

Nontuberculous Mycobacteria Persistence in a Cell Model Mimicking Alveolar Macrophages.

Optimization of fluorescent tools for cell biology studies in Gram-positive bacteria

Parasite communities in stray cat populations from Lisbon, Portugal.

Partner notification for chlamydia trachomatis urogenital infections: eight years of patient referral experience in the major Portuguese sexually transmitted infections clinic, 2000-07.

Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization

Phenotypic signatures and genetic determinants of oxacillin tolerance in a laboratory mutant of Staphylococcus aureus

Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus

Polymorphisms in inc proteins and differential expression of inc genes among Chlamydia trachomatis strains correlate with invasiveness and tropism of lymphogranuloma venereum isolates

Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism.

Pooling urine samples for PCR screening of C. trachomatis urogenital infection in women.

Predicting phenotype and emerging strains among Chlamydia trachomatis infections.

Quaternary ammonium surfactant structure determines selective toxicity towards bacteria: mechanisms of action and clinical implications in antibacterial prophylaxis

Sensitivity evaluation of the Gen-Probe AMP-CT assay by pooling urine samples for the screening of Chlamydia trachomatis urogenital infection.

The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen

The expression of Helicobacter pylori tfs plasticity zone cluster is regulated by pH and adherence, and its composition is associated with differential gastric IL-8 secretion

The inhibition of the apoptosis pathway by the Coxiella burnetii effector protein CaeA requires the EK repetition motif, but is independent of survivin