Lista de obras - Junji Iwahara - Dominio Público Uruguay

A Unique and Simple Approach to Improve Sensitivity in 15N-NMR Relaxation Measurements for NH₃⁺ Groups: Application to a Protein-DNA Complex.

artículo científico

A chemical approach for site-specific identification of NMR signals from protein side-chain NH₃⁺ groups forming intermolecular ion pairs in protein-nucleic acid complexes

artículo científico publicado en 2015

A helix-turn-helix structure unit in human centromere protein B (CENP-B).

artículo científico publicado en 1998

Accurate Determination of Leucine and Valine Side-chain Conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] Isotope Labeling, NOE Pattern Recognition, and Methine Cγ–Hγ/Cβ–Hβ Residual Dipolar Couplings: Application to the 34-kDa

artículo científico publicado en 2005

Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1.

artículo científico publicado en 2012

Balancing between affinity and speed in target DNA search by zinc-finger proteins via modulation of dynamic conformational ensemble

artículo científico publicado en 2015

Changes in conformational dynamics of basic side chains upon protein-DNA association

artículo científico publicado en 2016

Characterization of nonspecific protein-DNA interactions by 1H paramagnetic relaxation enhancement.

artículo científico publicado en 2004

Compensating increases in protein backbone flexibility occur when the Dead ringer AT-rich interaction domain (ARID) binds DNA: a nitrogen-15 relaxation study.

artículo científico publicado en 2005

Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.

artículo científico publicado en 2001

Detecting Counterion Dynamics in DNA-Protein Association

scientific article published on 03 December 2019

Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

artículo científico publicado en 2006

Direct Observation of Enhanced Translocation of a Homeodomain between DNA Cognate Sites by NMR Exchange Spectroscopy

artículo científico publicado en 2006

Direct detection of lysine side chain NH3+ in protein-heparin complexes using NMR spectroscopy.

artículo científico publicado en 2018

Direct evidence for deprotonation of a lysine side chain buried in the hydrophobic core of a protein.

artículo científico publicado en 2008

Discrete-State Kinetics Model for NMR-Based Analysis of Protein Translocation on DNA at Equilibrium

artículo científico publicado en 2017

Dynamic Equilibria of Short-Range Electrostatic Interactions at Molecular Interfaces of Protein-DNA Complexes.

artículo científico publicado en 2015

Dynamics of Ionic Interactions at Protein-Nucleic Acid Interfaces

scientific article published on 26 August 2020

Dynamics of lysine side-chain amino groups in a protein studied by heteronuclear 1H−15N NMR spectroscopy.

artículo científico publicado en 2011

Effective strategy to assign ¹H- ¹⁵N heteronuclear correlation NMR signals from lysine side-chain NH3₃⁺ groups of proteins at low temperature.

artículo científico publicado en 2014

Ensemble approach for NMR structure refinement against (1)H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule

artículo científico publicado en 2004

Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate.

artículo científico publicado en 2015

Experimental Evidence of Solvent-Separated Ion Pairs as Metastable States in Electrostatic Interactions of Biological Macromolecules

scientific article published on 11 December 2019

Gaussian Spectral-Density Function for Protein Internal Motions

scientific article published on 01 June 1996

Hydrogen-exchange kinetics studied through analysis of self-decoupling of nuclear magnetic resonance

scientific article published on 16 January 2020

Impact of two-bond N-N scalar couplings on N transverse relaxation measurements for arginine side chains of proteins

artículo científico publicado en 2018

Influence of quasi-specific sites on kinetics of target DNA search by a sequence-specific DNA-binding protein

artículo científico publicado en 2015

Internal Motions of Basic Side Chains of the Antennapedia Homeodomain in the Free and DNA-Bound States

artículo científico publicado en 2017

Intramolecular domain-domain association/dissociation and phosphoryl transfer in the mannitol transporter of Escherichia coli are not coupled

artículo científico publicado en 2007

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

artículo científico publicado en 2007

Lysines and Arginines play non-redundant roles in mediating chemokine-glycosaminoglycan interactions

artículo científico publicado en 2018

Mobility of Histidine Side Chains Analyzed with 15N NMR Relaxation and Cross-Correlation Data: Insight into Zinc-Finger-DNA Interactions

scientific article published on 18 April 2019

NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics

scientific article published on 27 September 2018

NMR Observation of Intermolecular Hydrogen Bonds between Protein Tyrosine Side-Chain OH and DNA Phosphate Groups

scientific article published on 30 January 2020

NMR Scalar Couplings across Intermolecular Hydrogen Bonds between Zinc-Finger Histidine Side Chains and DNA Phosphate Groups

artículo científico publicado en 2016

NMR Studies of Translocation of the Zif268 Protein between Its Target DNA Sites

artículo científico publicado en 2010

NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

artículo científico publicado en 2006

NMR studies on the dynamics of hydrogen bonds and ion pairs involving lysine side chains of proteins

artículo científico publicado en 2013

Observing in-phase single-quantum 15N multiplets for NH2/NH3+ groups with two-dimensional heteronuclear correlation spectroscopy

artículo científico publicado en 2008

Physicochemical Properties of Ion Pairs of Biological Macromolecules

artículo científico publicado en 2015

Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: origin of the optimal search at physiological ionic strength.

artículo científico publicado en 2014

Potential role of DNA methylation as a facilitator of target search processes for transcription factors through interplay with methyl-CpG-binding proteins.

artículo científico publicado en 2017

Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

artículo científico publicado en 2006

Quantifying and visualizing weak interactions between anions and proteins

artículo científico publicado en 2021

Racemic phosphorothioate as a tool for NMR investigations of protein-DNA complexes

artículo científico publicado en 2020

Redox properties of the A-domain of the HMGB1 protein.

artículo científico publicado en 2008

Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein

artículo científico publicado en 1997

Regulation of transcription factors via natural decoys in genomic DNA.

artículo científico publicado en 2016

Residence Times of Molecular Complexes in Solution from NMR Data of Intermolecular Hydrogen-Bond Scalar Coupling

artículo científico publicado en 2016

Sensitivity improvement for correlations involving arginine side-chain Nε/Hε resonances in multi-dimensional NMR experiments using broadband 15N 180° pulses

artículo científico publicado en 2006

Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation.

artículo científico publicado en 2011

Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1)

artículo científico publicado en 1999

Speed-stability paradox in DNA-scanning by zinc-finger proteins.

artículo científico publicado en 2013

Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity

artículo científico publicado en 2016

Stopped-flow fluorescence kinetic study of protein sliding and intersegment transfer in the target DNA search process

artículo científico publicado en 2013

Structural impact of complete CpG methylation within target DNA on specific complex formation of the inducible transcription factor Egr-1.

artículo científico publicado en 2015

Structure of sortase, the transpeptidase that anchors proteins to the cell wall of Staphylococcus aureus

artículo científico publicado en 2001

Structure-independent analysis of the breadth of the positional distribution of disordered groups in macromolecules from order parameters for long, variable-length vectors using NMR paramagnetic relaxation enhancement

artículo científico publicado en 2010

TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules

artículo científico publicado en 2007

Temperature dependence of internal motions of protein side-chain NH3(+) groups: insight into energy barriers for transient breakage of hydrogen bonds.

artículo científico publicado en 2014

Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

artículo científico publicado en 2009

Thermodynamic Additivity for Impacts of Base-Pair Substitutions on Association of the Egr-1 Zinc-Finger Protein with DNA.

artículo científico publicado en 2016

Visualization of transient encounter complexes in protein-protein association.

artículo científico publicado en 2006

[Intermediates in macromolecular binding process as revealed by new NMR methods]

scientific article published on 01 August 2007

Lista de obras de Junji Iwahara

A Unique and Simple Approach to Improve Sensitivity in 15N-NMR Relaxation Measurements for NH₃⁺ Groups: Application to a Protein-DNA Complex.

A chemical approach for site-specific identification of NMR signals from protein side-chain NH₃⁺ groups forming intermolecular ion pairs in protein-nucleic acid complexes

A helix-turn-helix structure unit in human centromere protein B (CENP-B).

Accurate Determination of Leucine and Valine Side-chain Conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] Isotope Labeling, NOE Pattern Recognition, and Methine Cγ–Hγ/Cβ–Hβ Residual Dipolar Couplings: Application to the 34-kDa

Asymmetrical roles of zinc fingers in dynamic DNA-scanning process by the inducible transcription factor Egr-1.

Balancing between affinity and speed in target DNA search by zinc-finger proteins via modulation of dynamic conformational ensemble

Changes in conformational dynamics of basic side chains upon protein-DNA association

Characterization of nonspecific protein-DNA interactions by 1H paramagnetic relaxation enhancement.

Compensating increases in protein backbone flexibility occur when the Dead ringer AT-rich interaction domain (ARID) binds DNA: a nitrogen-15 relaxation study.

Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA.

Detecting Counterion Dynamics in DNA-Protein Association

Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

Direct Observation of Enhanced Translocation of a Homeodomain between DNA Cognate Sites by NMR Exchange Spectroscopy

Direct detection of lysine side chain NH3+ in protein-heparin complexes using NMR spectroscopy.

Direct evidence for deprotonation of a lysine side chain buried in the hydrophobic core of a protein.

Discrete-State Kinetics Model for NMR-Based Analysis of Protein Translocation on DNA at Equilibrium

Dynamic Equilibria of Short-Range Electrostatic Interactions at Molecular Interfaces of Protein-DNA Complexes.

Dynamics of Ionic Interactions at Protein-Nucleic Acid Interfaces

Dynamics of lysine side-chain amino groups in a protein studied by heteronuclear 1H−15N NMR spectroscopy.

Effective strategy to assign ¹H- ¹⁵N heteronuclear correlation NMR signals from lysine side-chain NH3₃⁺ groups of proteins at low temperature.

Ensemble approach for NMR structure refinement against (1)H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule

Entropic Enhancement of Protein-DNA Affinity by Oxygen-to-Sulfur Substitution in DNA Phosphate.

Experimental Evidence of Solvent-Separated Ion Pairs as Metastable States in Electrostatic Interactions of Biological Macromolecules

Gaussian Spectral-Density Function for Protein Internal Motions

Hydrogen-exchange kinetics studied through analysis of self-decoupling of nuclear magnetic resonance

Impact of two-bond N-N scalar couplings on N transverse relaxation measurements for arginine side chains of proteins

Influence of quasi-specific sites on kinetics of target DNA search by a sequence-specific DNA-binding protein

Internal Motions of Basic Side Chains of the Antennapedia Homeodomain in the Free and DNA-Bound States

Intramolecular domain-domain association/dissociation and phosphoryl transfer in the mannitol transporter of Escherichia coli are not coupled

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

Lysines and Arginines play non-redundant roles in mediating chemokine-glycosaminoglycan interactions

Mobility of Histidine Side Chains Analyzed with 15N NMR Relaxation and Cross-Correlation Data: Insight into Zinc-Finger-DNA Interactions

NMR Methods for Characterizing the Basic Side Chains of Proteins: Electrostatic Interactions, Hydrogen Bonds, and Conformational Dynamics

NMR Observation of Intermolecular Hydrogen Bonds between Protein Tyrosine Side-Chain OH and DNA Phosphate Groups

NMR Scalar Couplings across Intermolecular Hydrogen Bonds between Zinc-Finger Histidine Side Chains and DNA Phosphate Groups

NMR Studies of Translocation of the Zif268 Protein between Its Target DNA Sites

NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA.

NMR studies on the dynamics of hydrogen bonds and ion pairs involving lysine side chains of proteins

Observing in-phase single-quantum 15N multiplets for NH2/NH3+ groups with two-dimensional heteronuclear correlation spectroscopy

Physicochemical Properties of Ion Pairs of Biological Macromolecules

Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: origin of the optimal search at physiological ionic strength.

Potential role of DNA methylation as a facilitator of target search processes for transcription factors through interplay with methyl-CpG-binding proteins.

Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

Quantifying and visualizing weak interactions between anions and proteins

Racemic phosphorothioate as a tool for NMR investigations of protein-DNA complexes

Redox properties of the A-domain of the HMGB1 protein.

Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein

Regulation of transcription factors via natural decoys in genomic DNA.

Residence Times of Molecular Complexes in Solution from NMR Data of Intermolecular Hydrogen-Bond Scalar Coupling

Sensitivity improvement for correlations involving arginine side-chain Nε/Hε resonances in multi-dimensional NMR experiments using broadband 15N 180° pulses

Signature of mobile hydrogen bonding of lysine side chains from long-range 15N-13C scalar J-couplings and computation.

Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1)

Speed-stability paradox in DNA-scanning by zinc-finger proteins.

Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity

Stopped-flow fluorescence kinetic study of protein sliding and intersegment transfer in the target DNA search process

Structural impact of complete CpG methylation within target DNA on specific complex formation of the inducible transcription factor Egr-1.

Structure of sortase, the transpeptidase that anchors proteins to the cell wall of Staphylococcus aureus

Structure-independent analysis of the breadth of the positional distribution of disordered groups in macromolecules from order parameters for long, variable-length vectors using NMR paramagnetic relaxation enhancement

TROSY-based z-exchange spectroscopy: application to the determination of the activation energy for intermolecular protein translocation between specific sites on different DNA molecules

Temperature dependence of internal motions of protein side-chain NH3(+) groups: insight into energy barriers for transient breakage of hydrogen bonds.

Theory, practice, and applications of paramagnetic relaxation enhancement for the characterization of transient low-population states of biological macromolecules and their complexes.

Thermodynamic Additivity for Impacts of Base-Pair Substitutions on Association of the Egr-1 Zinc-Finger Protein with DNA.

Visualization of transient encounter complexes in protein-protein association.

[Intermediates in macromolecular binding process as revealed by new NMR methods]