Lista de obras - James K Hane - Dominio Público Uruguay

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

artículo científico publicado en 2013

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

scientific article published on 24 August 2016

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres.

artículo científico publicado en 2010

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

artículo científico publicado en 2011

A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

article

Accessories Make the Outfit: Accessory Chromosomes and Other Dispensable DNA Regions in Plant-Pathogenic Fungi

artículo científico publicado en 2018

Adapting legume crops to climate change using genomic approaches.

artículo científico publicado en 2018

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches.

artículo científico publicado en 2015

Bioinformatic prediction of plant-pathogenicity effector proteins of fungi.

artículo científico publicado en 2018

Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome

artículo científico publicado en 2021

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.

artículo científico publicado en 2015

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

artículo científico publicado en 2016

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

artículo científico publicado en 2013

Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

artículo científico publicado en 2018

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

artículo científico publicado en 2017

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

artículo científico publicado en 2016

Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris

artículo científico publicado en 2008

Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum

artículo científico publicado en 2009

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing ⬇️

artículo científico publicado el 21 de octubre de 2011

Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

artículo científico publicado en 2007

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

artículo científico publicado en 2013

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

artículo científico publicado en 2011

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

artículo científico publicado en 2015

Evolution of Linked Avirulence Effectors in Leptosphaeria maculans Is Affected by Genomic Environment and Exposure to Resistance Genes in Host Plants ⬇️

artículo científico publicado el 4 de noviembre de 2010

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

artículo científico publicado en 2018

Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris.

artículo científico publicado en 2006

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

artículo científico publicado en 2011

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

artículo científico publicado en 2014

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth.

artículo científico publicado en 2016

Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici.

artículo científico publicado en 2015

OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

artículo científico publicado en 2016

Overview of genomic and bioinformatic resources for Zymoseptoria tritici

artículo científico

Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution

scientific article published on 01 September 2018

Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

article

Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts.

artículo científico publicado en 2016

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

artículo científico publicado en 2016

Selective sweeps in populations of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

article

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress

artículo científico publicado en 2015

The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula.

artículo científico publicado en 2006

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.

artículo científico publicado en 2014

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin

artículo científico publicado en 2018

Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability

artículo científico publicado en 2011

Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers

artículo científico publicado en 2014

Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici.

artículo científico publicado en 2016

Lista de obras de James K Hane

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres.

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

A whole genome scan of SNP data suggests a lack of abundant hard selective sweeps in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

Accessories Make the Outfit: Accessory Chromosomes and Other Dispensable DNA Regions in Plant-Pathogenic Fungi

Adapting legume crops to climate change using genomic approaches.

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches.

Bioinformatic prediction of plant-pathogenicity effector proteins of fungi.

Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris

Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing ⬇️

Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Evolution of Linked Avirulence Effectors in Leptosphaeria maculans Is Affected by Genomic Environment and Exposure to Resistance Genes in Host Plants ⬇️

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris.

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth.

Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici.

OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

Overview of genomic and bioinformatic resources for Zymoseptoria tritici

Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution

Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts.

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

Selective sweeps in populations of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress

The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula.

The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species.

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin

Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability

Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers

Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici.