Lista de obras - Yoshifumi Nishimura - Dominio Público Uruguay

A free-energy landscape for coupled folding and binding of an intrinsically disordered protein in explicit solvent from detailed all-atom computations

artículo científico publicado en 2011

A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models.

artículo científico publicado en 2017

A possible correlation between DNA conformation and the mode of action of restriction enzymes

artículo científico publicado en 1984

A protein recycling system for nuclear magnetic resonance-based screening of drug candidates

artículo científico publicado en 2006

Acetylated histone H4 tail enhances histone H3 tail acetylation by altering their mutual dynamics in the nucleosome

artículo científico publicado en 2020

An A-form poly(dG).poly(dC) in H2O solution

scientific article published in 1985

Anomalous temperature dependence of the phosphorus-31 nuclear magnetic resonance chemical shift in d(CCGG) and d(CCTAGG) at the junction of the pyrimidine stack followed by the purine stack

artículo científico publicado en 1986

Application of 13C nuclear magnetic resonance spectroscopy to molecular structural analyses of antibody molecules

artículo científico publicado en 1989

C-terminal acidic domain of histone chaperone human NAP1 is an efficient binding assistant for histone H2A-H2B, but not H3-H4.

artículo científico publicado en 2016

Characteristic H3 N-tail dynamics in the nucleosome core particle, nucleosome, and chromatosome

artículo científico publicado en 2022

Charge-neutralization effect of the tail regions on the histone H2A/H2B dimer structure.

artículo científico publicado en 2015

Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways.

artículo científico publicado en 2017

Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities.

artículo científico publicado en 2005

Conclusive evidence of the reconstituted hexasome proven by native mass spectrometry

artículo científico publicado en 2013

Correction: Impact of nucleic acid and methylated H3K9 binding activities of Suv39h1 on its heterochromatin assembly.

artículo científico publicado en 2017

Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.

artículo científico publicado en 2017

Crystallization and preliminary X-ray diffraction studies on the DNA-binding domain of the transcriptional activator protein PhoB from Escherichia coli.

artículo científico publicado en 2002

Cytochrome d axial ligand of the bd-type terminal quinol oxidase from Escherichia coli

scientific article published on 01 November 1993

Dataset for the NMR structure of the intrinsically disordered acidic region of XPC bound to the PH domain of TFIIH p62.

artículo científico publicado en 2016

Deimination stabilizes histone H2A/H2B dimers as revealed by electrospray ionization mass spectrometry

artículo científico publicado en 2010

Determination of the NMR solution structure of a specific DNA complex of the Myb DNA-binding domain

artículo científico publicado en 1995

Dynamics of DNA in chromatin and DNA binding mode to core protein

artículo científico publicado en 1983

Dynamics of the Extended String-Like Interaction of TFIIE with the p62 Subunit of TFIIH

artículo científico publicado en 2016

Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site

artículo científico publicado en 1997

Evaluation of binding affinity of protein-mutant DNA complexes in solution by laser spray mass spectrometry

artículo científico publicado en 2006

Extended string binding mode of the phosphorylated transactivation domain of tumor suppressor p53

artículo científico publicado en 2014

Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail

artículo científico publicado en 2016

Extraordinarily stable mini-hairpins: electrophoretical and thermal properties of the various sequence variants of d(GCGAAAGC) and their effect on DNA sequencing.

artículo científico publicado en 1992

Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling.

artículo científico publicado en 2012

Gas-phase structure of the histone multimers characterized by ion mobility mass spectrometry and molecular dynamics simulation.

artículo científico publicado en 2013

Impact of nucleic acid and methylated H3K9 binding activities of Suv39h1 on its heterochromatin assembly

artículo científico publicado en 2017

Internal motion of deoxyribonucleic acid in chromatin. Nanosecond fluorescence studies of intercalated ethidium.

artículo científico publicado en 1983

Intrinsic nucleic acid-binding activity of Chp1 chromodomain is required for heterochromatic gene silencing

artículo científico publicado en 2012

Investigation of molecular size of transcription factor TFIIE in solution.

artículo científico publicado en 2005

Investigation of the pyrimidine preference by the c-Myb DNA-binding domain at the initial base of the consensus sequence

scientific article published on 01 July 1997

Lifetime of tyrosine fluorescence in nucleosome core particles

scientific article published on 01 June 1982

Local and overall conformations of DNA double helices with the A - T base pairs

scientific article published on 01 August 1986

Location of phosphorylation site and DNA-binding site of a positive regulator, OmpR, involved in activation of the osmoregulatory genes of Escherichia coli

scientific article published on 01 June 1989

Mass spectrometric approach for characterizing the disordered tail regions of the histone H2A/H2B dimer

artículo científico publicado en 2015

N-terminal phosphorylation of HP1α increases its nucleosome-binding specificity

artículo científico publicado en 2014

NMR dynamics distinguish between hard and soft hydrophobic cores in the DNA-binding domain of PhoB and demonstrate different roles of the cores in binding to DNA

scientific article published on 24 January 2007

NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains

artículo científico publicado en 2001

Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain

artículo científico publicado en 2008

Nuclear magnetic resonance study on the interaction of aclacinomycin-A with a deoxyribo-hexanucleotide pentaphosphate d(CCTAGG)2 in aqueous solution

artículo científico publicado en 1986

Nucleosome organization and chromatin dynamics in telomeres

artículo científico

On the base-stacking in the 5'-terminal cap structure of mRNA: a fluorescence study.

artículo científico publicado en 1980

Protein 3000 project "Transcription and translation"

artículo científico publicado en 2008

Proton nuclear magnetic resonance study of a selectively deuterated mouse monoclonal antibody: use of two-dimensional homonuclear Hartmann-Hahn spectroscopy

artículo científico publicado en 1989

Raman diagnosis of nucleic acid structure: sugar-puckering and glycosidic conformation in the guanosine moiety.

artículo científico publicado en 1983

Real-time and simultaneous monitoring of the phosphorylation and enhanced interaction of p53 and XPC acidic domains with the TFIIH p62 subunit.

artículo científico

Selective dissociation of non-covalent bonds in biological molecules by laser spray.

artículo científico publicado en 2004

Sertraline, chlorprothixene, and chlorpromazine characteristically interact with the REST-binding site of the corepressor mSin3, showing medulloblastoma cell growth inhibitory activities

artículo científico publicado en 2018

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

artículo científico publicado en 1994

Solution structure of a telomeric DNA complex of human TRF1

artículo científico publicado en 2001

Solution structure of the DNA-binding domain of human telomeric protein, hTRF1 ⬇️

artículo científico publicado el 15 de agosto de 1998

Solution structure of the isolated histone H2A-H2B heterodimer.

artículo científico publicado en 2016

Stability analysis for double-stranded DNA oligomers and their noncovalent complexes with drugs by laser spray

artículo científico publicado en 2006

Structural Diversity of Nucleosomes Characterized by Native Mass Spectrometry

artículo científico publicado en 2018

Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC

artículo científico publicado en 2015

Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene

artículo científico publicado en 2011

Structural characterization of human general transcription factor TFIIF in solution

artículo científico publicado en 2008

Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box

artículo científico publicado en 2000

Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH

artículo científico publicado en 2008

Structural polymorphism of chromodomains in Chd1.

artículo científico publicado en 2006

Structural visualization of key steps in nucleosome reorganization by human FACT

artículo científico publicado en 2019

Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface

artículo científico publicado en 2000

Structure-spectrum correlations in nucleic acids. I. Raman lines in the 600-700 cm-1 range of guanosine residue.

artículo científico publicado en 1984

Substitutions of conserved aromatic amino acid residues in subunit I perturb the metal centers of the Escherichia coli bo-type ubiquinol oxidase

artículo científico publicado en 1998

Telomeric repeats act as nucleosome-disfavouring sequences in vivo

artículo científico publicado en 2013

The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues

artículo científico publicado en 2020

The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH.

artículo científico publicado en 2016

The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation

scientific article published on 01 February 1996

The neural repressor NRSF/REST binds the PAH1 domain of the Sin3 corepressor by using its distinct short hydrophobic helix

artículo científico publicado en 2005

Thermal unfolding of proteins probed by laser spray mass spectrometry

artículo científico publicado en 2008

Three human RNA polymerases interact with TFIIH via a common RPB6 subunit

artículo científico publicado en 2022

Top-down analysis of basic proteins by microchip capillary electrophoresis mass spectrometry

scientific article published on 01 January 2006

Two metal-binding sites in a lead ribozyme bound to competitively by Pb2+ and Mg2+--induced structural changes as revealed by NMR.

artículo científico publicado en 1998

Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment

artículo científico publicado en 2008

[A historical view of the double helix: its discovery, proof and prospects]

artículo científico publicado en 2003

[Neural repressor NRSF/REST binds to the mSin3 PAH1 domain by using its short hydrophobic helix]

scientific article published on 01 July 2006

[New paradigm on dynamic protein structure: Introduction].

artículo científico publicado en 2007

[Protein dynamics and naturally unfolded state]

scientific article published on 01 August 2007

[Role of NMR in structural proteomics]

scientific article published on 01 June 2005

[Structural biology of a general transcription factor, TFIIE and its interaction mode with TFIIH]

artículo científico publicado en 2008

[Structural biology of transcription on eukaryotic chromatin]

artículo científico publicado en 2005

[Structural biology on transcription]

artículo científico publicado en 2002

Lista de obras de Yoshifumi Nishimura

A free-energy landscape for coupled folding and binding of an intrinsically disordered protein in explicit solvent from detailed all-atom computations

A mimetic of the mSin3-binding helix of NRSF/REST ameliorates abnormal pain behavior in chronic pain models.

A possible correlation between DNA conformation and the mode of action of restriction enzymes

A protein recycling system for nuclear magnetic resonance-based screening of drug candidates

Acetylated histone H4 tail enhances histone H3 tail acetylation by altering their mutual dynamics in the nucleosome

An A-form poly(dG).poly(dC) in H2O solution

Anomalous temperature dependence of the phosphorus-31 nuclear magnetic resonance chemical shift in d(CCGG) and d(CCTAGG) at the junction of the pyrimidine stack followed by the purine stack

Application of 13C nuclear magnetic resonance spectroscopy to molecular structural analyses of antibody molecules

C-terminal acidic domain of histone chaperone human NAP1 is an efficient binding assistant for histone H2A-H2B, but not H3-H4.

Characteristic H3 N-tail dynamics in the nucleosome core particle, nucleosome, and chromatosome

Charge-neutralization effect of the tail regions on the histone H2A/H2B dimer structure.

Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways.

Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities.

Conclusive evidence of the reconstituted hexasome proven by native mass spectrometry

Correction: Impact of nucleic acid and methylated H3K9 binding activities of Suv39h1 on its heterochromatin assembly.

Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.

Crystallization and preliminary X-ray diffraction studies on the DNA-binding domain of the transcriptional activator protein PhoB from Escherichia coli.

Cytochrome d axial ligand of the bd-type terminal quinol oxidase from Escherichia coli

Dataset for the NMR structure of the intrinsically disordered acidic region of XPC bound to the PH domain of TFIIH p62.

Deimination stabilizes histone H2A/H2B dimers as revealed by electrospray ionization mass spectrometry

Determination of the NMR solution structure of a specific DNA complex of the Myb DNA-binding domain

Dynamics of DNA in chromatin and DNA binding mode to core protein

Dynamics of the Extended String-Like Interaction of TFIIE with the p62 Subunit of TFIIH

Escherichia coli positive regulator OmpR has a large loop structure at the putative RNA polymerase interaction site

Evaluation of binding affinity of protein-mutant DNA complexes in solution by laser spray mass spectrometry

Extended string binding mode of the phosphorylated transactivation domain of tumor suppressor p53

Extended string-like binding of the phosphorylated HP1α N-terminal tail to the lysine 9-methylated histone H3 tail

Extraordinarily stable mini-hairpins: electrophoretical and thermal properties of the various sequence variants of d(GCGAAAGC) and their effect on DNA sequencing.

Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling.

Gas-phase structure of the histone multimers characterized by ion mobility mass spectrometry and molecular dynamics simulation.

Impact of nucleic acid and methylated H3K9 binding activities of Suv39h1 on its heterochromatin assembly

Internal motion of deoxyribonucleic acid in chromatin. Nanosecond fluorescence studies of intercalated ethidium.

Intrinsic nucleic acid-binding activity of Chp1 chromodomain is required for heterochromatic gene silencing

Investigation of molecular size of transcription factor TFIIE in solution.

Investigation of the pyrimidine preference by the c-Myb DNA-binding domain at the initial base of the consensus sequence

Lifetime of tyrosine fluorescence in nucleosome core particles

Local and overall conformations of DNA double helices with the A - T base pairs

Location of phosphorylation site and DNA-binding site of a positive regulator, OmpR, involved in activation of the osmoregulatory genes of Escherichia coli

Mass spectrometric approach for characterizing the disordered tail regions of the histone H2A/H2B dimer

N-terminal phosphorylation of HP1α increases its nucleosome-binding specificity

NMR dynamics distinguish between hard and soft hydrophobic cores in the DNA-binding domain of PhoB and demonstrate different roles of the cores in binding to DNA

NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains

Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain

Nuclear magnetic resonance study on the interaction of aclacinomycin-A with a deoxyribo-hexanucleotide pentaphosphate d(CCTAGG)2 in aqueous solution

Nucleosome organization and chromatin dynamics in telomeres

On the base-stacking in the 5'-terminal cap structure of mRNA: a fluorescence study.

Protein 3000 project "Transcription and translation"

Proton nuclear magnetic resonance study of a selectively deuterated mouse monoclonal antibody: use of two-dimensional homonuclear Hartmann-Hahn spectroscopy

Raman diagnosis of nucleic acid structure: sugar-puckering and glycosidic conformation in the guanosine moiety.

Real-time and simultaneous monitoring of the phosphorylation and enhanced interaction of p53 and XPC acidic domains with the TFIIH p62 subunit.

Selective dissociation of non-covalent bonds in biological molecules by laser spray.

Sertraline, chlorprothixene, and chlorpromazine characteristically interact with the REST-binding site of the corepressor mSin3, showing medulloblastoma cell growth inhibitory activities

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

Solution structure of a telomeric DNA complex of human TRF1

Solution structure of the DNA-binding domain of human telomeric protein, hTRF1 ⬇️

Solution structure of the isolated histone H2A-H2B heterodimer.

Stability analysis for double-stranded DNA oligomers and their noncovalent complexes with drugs by laser spray

Structural Diversity of Nucleosomes Characterized by Native Mass Spectrometry

Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC

Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene

Structural characterization of human general transcription factor TFIIF in solution

Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box

Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH

Structural polymorphism of chromodomains in Chd1.

Structural visualization of key steps in nucleosome reorganization by human FACT

Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface

Structure-spectrum correlations in nucleic acids. I. Raman lines in the 600-700 cm-1 range of guanosine residue.

Substitutions of conserved aromatic amino acid residues in subunit I perturb the metal centers of the Escherichia coli bo-type ubiquinol oxidase

Telomeric repeats act as nucleosome-disfavouring sequences in vivo

The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues

The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH.

The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation

The neural repressor NRSF/REST binds the PAH1 domain of the Sin3 corepressor by using its distinct short hydrophobic helix

Thermal unfolding of proteins probed by laser spray mass spectrometry

Three human RNA polymerases interact with TFIIH via a common RPB6 subunit

Top-down analysis of basic proteins by microchip capillary electrophoresis mass spectrometry

Two metal-binding sites in a lead ribozyme bound to competitively by Pb2+ and Mg2+--induced structural changes as revealed by NMR.

Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment

[A historical view of the double helix: its discovery, proof and prospects]