Lista de obras - Drena Dobbs - Dominio Público Uruguay

A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity

artículo científico publicado en 2016

A proteomic analysis of maize chloroplast biogenesis

artículo científico publicado en 2004

A two-stage classifier for identification of protein-protein interface residues

artículo científico publicado en 2004

An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.

artículo científico publicado en 2008

An analysis of conformational changes upon RNA-protein binding

article

Analysis of the EIAV Rev-responsive element (RRE) reveals a conserved RNA motif required for high affinity Rev binding in both HIV-1 and EIAV

artículo científico publicado en 2008

Assessing the Performance of Macromolecular Sequence Classifiers

scholarly article published October 2007

Automated data-driven discovery of motif-based protein function classifiers

article

Characterization of functional domains of equine infectious anemia virus Rev suggests a bipartite RNA-binding domain

artículo científico publicado en 2006

Characterization of protein-protein interfaces

artículo científico publicado en 2008

Computational Prediction of RNA-Protein Interactions.

artículo científico publicado en 2017

Computational modeling suggests dimerization of equine infectious anemia virus Rev is required for RNA binding.

artículo científico publicado en 2014

Computational prediction of protein interfaces: A review of data driven methods

artículo científico publicado en 2015

Data-Driven Theory Refinement Using KBDistAl

DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

artículo científico publicado en 2013

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

artículo científico publicado en 2007

G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation

artículo científico publicado en 2014

Glycosylation site prediction using ensembles of Support Vector Machine classifiers

artículo científico publicado en 2007

HomPPI: a class of sequence homology based protein-protein interface prediction methods

artículo científico publicado en 2011

Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step.

artículo científico publicado en 2011

Identification and characterization of a putative telomere end-binding protein from Tetrahymena thermophila.

artículo científico publicado en 1995

Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins.

artículo científico publicado en 2017

Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach

artículo científico publicado en 2004

Improving protein-RNA interface prediction by combining sequence homology based method with a naive Bayes classifier

In Silico Prediction of Linear B-Cell Epitopes on Proteins

artículo científico publicado en 2017

Information Integration from Semantically Heterogeneous Biological Data Sources

article published in 2005

Mimosine Differentially Inhibits DNA Replication and Cell Cycle Progression in Somatic Cells Compared to Embryonic Cells of Xenopus laevis

scientific article published on 01 March 1995

Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling

artículo científico publicado en 2009

On Evaluating MHC-II Binding Peptide Prediction Methods

artículo científico publicado en 2008

PRIDB: a Protein-RNA interface database

artículo científico publicado en 2011

Partner‐specific Prediction of RNA‐binding Residues in Proteins: A Critical Assessment

artículo científico publicado en 2018

Predicting DNA-binding sites of proteins from amino acid sequence

artículo científico publicado en 2006

Predicting MHC-II binding affinity using multiple instance regression

artículo científico publicado en 2011

Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information

Predicting RNA-protein interactions using only sequence information

artículo científico publicado en 2011

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

artículo científico publicado en 2004

Predicting flexible length linear B-cell epitopes.

artículo científico publicado en 2008

Predicting linear B-cell epitopes using string kernels

artículo científico publicado en 2008

Predicting protective bacterial antigens using random forest classifiers

Predicting protein-protein interface residues using local surface structural similarity

artículo científico publicado en 2012

Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences ⬇️

artículo científico publicado el 2 de noviembre de 2010

Prediction of RNA binding sites in proteins from amino acid sequence

artículo científico publicado en 2006

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

artículo científico publicado en 2012

Proteomic differentiation between murine retinal and brain-derived progenitor cells.

artículo científico publicado en 2008

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

artículo científico publicado en 2007

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins

artículo científico publicado en 2014

Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study

Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

artículo científico publicado en 2008

Robust activation of microhomology-mediated end joining for precision gene editing applications

article

Sequence-Based Prediction of RNA-Binding Residues in Proteins.

artículo científico publicado en 2017

Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

artículo científico publicado en 2006

Struct-NB: predicting protein-RNA binding sites using structural features

artículo científico publicado en 2010

Structural characterization of RNA-binding sites of proteins: Preliminary results

Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases

artículo científico publicado en 2011

Template-based protein-protein docking exploiting pairwise interfacial residue restraints

artículo científico publicado en 2016

Using Global Sequence Similarity to Enhance Biological Sequence Labeling

Visualization of Nucleosomal Substructure in Native Chromatin by Atomic Force Microscopy

scientific article published on 01 April 1995

ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.

artículo científico publicado en 2011

Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.

artículo científico publicado en 2007

Lista de obras de Drena Dobbs

A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity

A proteomic analysis of maize chloroplast biogenesis

A two-stage classifier for identification of protein-protein interface residues

An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.

An analysis of conformational changes upon RNA-protein binding

Analysis of the EIAV Rev-responsive element (RRE) reveals a conserved RNA motif required for high affinity Rev binding in both HIV-1 and EIAV

Assessing the Performance of Macromolecular Sequence Classifiers

Automated data-driven discovery of motif-based protein function classifiers

Characterization of functional domains of equine infectious anemia virus Rev suggests a bipartite RNA-binding domain

Characterization of protein-protein interfaces

Computational Prediction of RNA-Protein Interactions.

Computational modeling suggests dimerization of equine infectious anemia virus Rev is required for RNA binding.

Computational prediction of protein interfaces: A review of data driven methods

Data-Driven Theory Refinement Using KBDistAl

DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach

G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation

Glycosylation site prediction using ensembles of Support Vector Machine classifiers

HomPPI: a class of sequence homology based protein-protein interface prediction methods

Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step.

Identification and characterization of a putative telomere end-binding protein from Tetrahymena thermophila.

Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins.

Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach

Improving protein-RNA interface prediction by combining sequence homology based method with a naive Bayes classifier

In Silico Prediction of Linear B-Cell Epitopes on Proteins

Information Integration from Semantically Heterogeneous Biological Data Sources

Mimosine Differentially Inhibits DNA Replication and Cell Cycle Progression in Somatic Cells Compared to Embryonic Cells of Xenopus laevis

Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling

On Evaluating MHC-II Binding Peptide Prediction Methods

PRIDB: a Protein-RNA interface database

Partner‐specific Prediction of RNA‐binding Residues in Proteins: A Critical Assessment

Predicting DNA-binding sites of proteins from amino acid sequence

Predicting MHC-II binding affinity using multiple instance regression

Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information

Predicting RNA-protein interactions using only sequence information

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

Predicting flexible length linear B-cell epitopes.

Predicting linear B-cell epitopes using string kernels

Predicting protective bacterial antigens using random forest classifiers

Predicting protein-protein interface residues using local surface structural similarity

Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences ⬇️

Prediction of RNA binding sites in proteins from amino acid sequence

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

Proteomic differentiation between murine retinal and brain-derived progenitor cells.

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins

Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study

Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification

Robust activation of microhomology-mediated end joining for precision gene editing applications

Sequence-Based Prediction of RNA-Binding Residues in Proteins.

Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

Struct-NB: predicting protein-RNA binding sites using structural features

Structural characterization of RNA-binding sites of proteins: Preliminary results

Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases

Template-based protein-protein docking exploiting pairwise interfacial residue restraints

Using Global Sequence Similarity to Enhance Biological Sequence Labeling

Visualization of Nucleosomal Substructure in Native Chromatin by Atomic Force Microscopy

ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.

Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.