Filtros de búsqueda

Lista de obras de Giancarlo Mauri

A Comparative Study of Four Parallel and Distributed PSO Methods

A Comparison of Genetic Algorithms and Particle Swarm Optimization for Parameter Estimation in Stochastic Biochemical Systems

scholarly article by Daniela Besozzi et al published 2009 in Lecture Notes in Computer Science

A Decision Procedure for Reflexive Regular Splicing Languages

A GPU-Based Multi-swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series

A Membrane Computing System Mapped on an Asynchronous, Distributed Computational Environment

A Multi-volume Approach to Stochastic Modeling with Membrane Systems

article

A Mutual Information Approach to Data Integration for Alzheimer’s Disease Patients

A New Evolutionary Gene Regulatory Network Reverse Engineering Tool

artículo científico publicado en 2011

A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems

A Parallel Model Based on Cellular Automata for the Simulation of Pesticide Percolation in the Soil*

A Study on the Automatic Generation of Asynchronous Cellular Automata Rules by Means of Genetic Algorithms

scholarly article by Andrea Valsecchi et al published 2010 in Lecture Notes in Computer Science

A Support Vector Machine Classification of Thyroid Bioptic Specimens Using MALDI-MSI Data

artículo científico publicado en 2016

A Surveillance System for Early-Stage Diagnosis of Endogenous Diseases by Swarms of Nanobots

A comparison of machine learning techniques for survival prediction in breast cancer ⬇️

artículo científico publicado en 2011

A distance between populations for one-point crossover in genetic algorithms

A duality theorem for two connectivity-preserving parallel shrinking transformations

A fully automatic approach for multimodal PET and MR image segmentation in gamma knife treatment planning

artículo científico publicado en 2017

A local landscape mapping method for protein structure prediction in the HP model

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect

artículo científico publicado en 2017

A new clustering approach for learning transcriptional modules

artículo científico publicado en 2012

A novel framework for MR image segmentation and quantification by using MedGA

scientific article published on 17 April 2019

A parallel algorithm for pattern discovery in biological sequences

A study of parallel and distributed particle swarm optimization methods

A study of search algorithms’ optimization speed

A study of the neutrality of Boolean function landscapes in genetic programming

A study on learning robustness using asynchronous 1D cellular automata rules

A toolbox for simpler active membrane algorithms

APPROXIMATING THE MAXIMUM ISOMORPHIC AGREEMENT SUBTREE IS HARD

Accelerated Analysis of Biological Parameters Space Using GPUs

Algorithmic Methods to Infer the Evolutionary Trajectories in Cancer Progression

Algorithmic methods to infer the evolutionary trajectories in cancer progression ⬇️

artículo científico publicado en 2016

Algorithms for pattern matching and discovery in RNA secondary structure

scholarly article by Giancarlo Mauri & Giulio Pavesi published May 2005 in Theoretical Computer Science

An Efficient Simulation of Polynomial-Space Turing Machines by P Systems with Active Membranes

An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences

An algorithm for finding signals of unknown length in DNA sequences

artículo científico publicado en 2001

An empirical comparison of parallel and distributed particle swarm optimization methods

An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis

artículo científico publicado en 2013

An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes

An excursion in reaction systems: From computer science to biology

scholarly article by Luca Corolli et al published October 2012 in Theoretical Computer Science

Analysis and Simulation of Dynamics in Probabilistic P Systems

article

Area-based cell colony surviving fraction evaluation: A novel fully automatic approach using general-purpose acquisition hardware.

artículo científico publicado en 2017

Automated Prostate Gland Segmentation Based on an Unsupervised Fuzzy C-Means Clustering Technique Using Multispectral T1w and T2w MR Imaging

Availability of MudPIT data for classification of biological samples

artículo científico publicado en 2013

BITS 2015: the annual meeting of the Italian Society of Bioinformatics

artículo científico publicado en 2016

BioSimWare: A Software for the Modeling, Simulation and Analysis of Biological Systems

Biowep: a workflow enactment portal for bioinformatics applications

artículo científico publicado en 2007

Bounded Extrinsic Noises Affecting Biochemical Networks with Low Molecule Numbers

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

artículo científico publicado en 2016

CAPRI: efficient inference of cancer progression models from cross-sectional data ⬇️

artículo científico publicado en 2015

COSYS: A Computational Infrastructure for Systems Biology

Cancer cell growth and survival as a system-level property sustained by enhanced glycolysis and mitochondrial metabolic remodeling

artículo científico publicado en 2012

Candidate biomarkers for response to tamoxifen in breast cancer metastatic patients

Cellular automata: From modeling to applications

Characterising the complexity of tissue P systems with fission rules

scholarly article by Alberto Leporati et al published December 2017 in Journal of Computer and System Sciences

Circular splicing and regularity

artículo científico publicado en 2004

Clique Editing to Support Case Versus Control Discrimination

Clustering Causal Relationships in Genes Expression Data

article

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

artículo científico publicado en 2015

Combination of gene expression and genome copy number alteration has a prognostic value for breast cancer

artículo científico publicado en 2013

Combined analysis of chromosomal instabilities and gene expression for colon cancer progression inference

artículo científico publicado en 2014

Communication via Mobile Vesicles in Brane Calculi

Complexity Classes for Membrane Systems: A Survey

Complexity aspects of polarizationless membrane systems

article published in 2008

Complexity classes for membrane systems

Computational Complexity Aspects in Membrane Computing

Computational Methods for Resting-State EEG of Patients With Disorders of Consciousness

scientific article published on 06 August 2019

Computational complexity of finite asynchronous cellular automata

Computational strategies for a system-level understanding of metabolism

artículo científico publicado en 2014

Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features

Constraint-Based Modeling and Simulation of Cell Populations

Copy–Number Alterations for Tumor Progression Inference

Corrigendum: Computational Methods for Resting-State EEG of Patients With Disorders of Consciousness

scientific article published on 17 December 2019

Covering with Clubs: Complexity and Approximability

DIABESITY: A Study for mHealth Integrated Solutions

article

DNA and circular splicing?

artículo científico publicado en 2001

Definition of a crossover based distance for genetic algorithms

scholarly article published 2010

Detecting alternative gene structures from spliced ESTs: a computational approach

artículo científico publicado en 2009

Detecting similarities among distant homologous proteins by comparison of domain flexibilities.

artículo científico publicado en 2007

Different expression of Fibrinopeptide A and related fragments in serum of type 1 diabetic patients with nephropathy

scientific article published on 23 July 2009

Early-Stage Diagnosis of Endogenous Diseases by Swarms of Nanobots: An Applicative Scenario

Efficient Simulation of Reaction Systems on Graphics Processing Units

Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes

artículo científico publicado en 2018

Energy-Based Models of P Systems

Enzymatic Numerical P Systems Using Elementary Arithmetic Operations

Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs

article

Evolutionary inference of biochemical reaction networks accelerated on graphics processing units

article published in 2013

Experimenting an approximation algorithm for the LCS

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks

scientific article published on 09 September 2021

Fingerprint Clustering with Bounded Number of Missing Values

Fingerprint Clustering with Bounded Number of Missing Values

First Steps Towards a Wet Implementation for τ-DPP

Flattening in (Tissue) P Systems

Foreword: asynchronous behavior of cellular automata and discrete models

From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data

artículo científico publicado en 2017

Fully Automatic Multispectral MR Image Segmentation of Prostate Gland Based on the Fuzzy C-Means Clustering Algorithm

Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization

Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells

artículo científico publicado en 2020

GESTODIFFERENT: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process

artículo científico publicado en 2013

GP Generation of Pedestrian Behavioral Rules in an Evacuation Model Based on SCA

GPU-accelerated simulations of mass-action kinetics models with cupSODA

article

GPU-powered model analysis with PySB/cupSODA.

artículo científico

GTVcut for neuro-radiosurgery treatment planning: an MRI brain cancer seeded image segmentation method based on a cellular automata model

article

GenHap: a novel computational method based on genetic algorithms for haplotype assembly

Gene switching rate determines response to extrinsic perturbations in the self-activation transcriptional network motif

artículo científico publicado en 2016

GeneSyn: a tool for detecting conserved gene order across genomes

artículo científico publicado en 2004

Gillespie’s Stochastic Simulation Algorithm on MIC coprocessors

Grid Computing for Sensitivity Analysis of Stochastic Biological Models

How Redundant Is Your Universal Computation Device?

How interacting pathways are regulated by miRNAs in breast cancer subtypes

artículo científico publicado en 2016

Implementing Cellular Automata Based Models on Parallel Architectures: The CAPP Project

In silico representation and discovery of transcription factor binding sites

artículo científico publicado en 2004

In-Silico Integration Approach to Identify a Key miRNA Regulating a Gene Network in Aggressive Prostate Cancer.

artículo científico publicado en 2018

Inferring tree causal models of cancer progression with probability raising

artículo científico publicado en 2014

Integration of mRNA expression profile, copy number alterations, and microRNA expression levels in breast cancer to improve grade definition

artículo científico publicado en 2014

Integration of single-cell RNA-seq data into metabolic models to characterize tumour cell populations

scholarly article published 30 January 2018

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

artículo científico publicado en 2019

Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power

artículo científico publicado en 2018

LASSIE: simulating large-scale models of biochemical systems on GPUs.

artículo científico publicado en 2017

Linear splicing and syntactic monoid

artículo científico publicado en 2006

Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling

MTGO: PPI Network Analysis Via Topological and Functional Module Identification.

artículo científico publicado en 2018

MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy

scientific article published on 17 April 2020

MaREA: Metabolic feature extraction, enrichment and visualization of RNAseq data

scholarly article published 16 January 2018

Machine learning approaches in MALDI-MSI: clinical applications

artículo científico publicado en 2016

Managing chronic pathologies with a stepped mHealth-based approach in clinical psychology and medicine.

artículo científico publicado en 2015

Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization

artículo científico publicado en 2014

MedGA: A novel evolutionary method for image enhancement in medical imaging systems

artículo científico publicado en 2019

Membrane Systems and Their Application to Systems Biology

Membrane systems in systems biology

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes

artículo científico publicado en 2006

Modeling and stochastic simulation of the Ras/cAMP/PKA pathway in the yeast Saccharomyces cerevisiae evidences a key regulatory function for intracellular guanine nucleotides pools

artículo científico publicado en 2007

Modeling cell proliferation in human acute myeloid leukemia xenografts

scientific article published on 01 September 2019

Modelling metapopulations with stochastic membrane systems

artículo científico publicado en 2007

Monodirectional P systems

Multilayered cellular automata

Multimodal medical image registration using Particle Swarm Optimization: A review

article

Mutual information optimization for mass spectra data alignment

artículo científico publicado en 2011

NeXt for neuro-radiosurgery: A fully automatic approach for necrosis extraction in brain tumor MRI using an unsupervised machine learning technique

scholarly article by Leonardo Rundo et al published 11 November 2017 in International Journal of Imaging Systems and Technology

Neuro-Radiosurgery Treatments: MRI Brain Tumor Seeded Image Segmentation Based on a Cellular Automata Model

article

New Technologies for the Management and Rehabilitation of Chronic Diseases and Conditions.

artículo científico publicado en 2015

Non-confluence in divisionless P systems with active membranes

On efficient computation of the coefficients of some polynomials with applications to some enumeration problems

On the Complexity of the l-diversity Problem

On the power and size of extended gemmating P systems

On the power of circular splicing

artículo científico publicado en 2005

On the use of genetic programming for the prediction of survival in cancer

artículo científico publicado en 2010

On three variants of rewriting P systems

On-line construction of compact directed acyclic word graphs ⬇️

Scientific article by Inenaga et al.

Ontological modeling at a domain interface: bridging clinical and biomolecular knowledge

Optimization speed and fair sets of functions

Ordering cancer mutational profiles of cross-sectional copy number alterations

Orthology Correction for Gene Tree Reconstruction: Theoretical and Experimental Results

article

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.

artículo científico publicado en 2005

P Systems Simulating Oracle Computations

P Systems with Active Membranes Working in Sublinear Space

P Systems with Memory

P systems with active membranes: trading time for space

article published in 2010

P systems with deadlock.

artículo científico publicado en 2003

Parallel implementation of efficient search schemes for the inference of cancer progression models ⬇️

Parallel simulation of reaction–diffusion phenomena in percolation processes

article published in 2001

Pathway-based classification of breast cancer subtypes.

artículo científico publicado en 2017

Picture Languages Generated by Assembling Tiles

Poster: Characterization of distinguishing regions for Renal Cell Carcinoma discrimination

Preface

Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic

Proteomic profiles of thyroid tumors by mass spectrometry-imaging on tissue microarrays.

artículo científico publicado en 2016

Quantum Sequential P Systems with Unit Rules and Energy Assigned to Membranes

RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences

artículo científico publicado en 2004

Recent complexity-theoretic results on P systems with active membranes

Regular splicing languages and subclasses

Restricted and Swap Common Superstring: A Multivariate Algorithmic Perspective

Restricted and Swap Common Superstring: A Parameterized View

Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization

Robust Conclusions in Mass Spectrometry Analysis

Self-adaptive simulation time for sensitivity analysis of a stochastic computational model

Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes.

artículo científico publicado en 2013

Separating some splicing models

artículo científico publicado en 2001

Shallow Non-confluent P Systems

article by Alberto Leporati et al published 2017 in Lecture Notes in Computer Science

Simulating Elementary Active Membranes

Simulation and Analysis of the Blood Coagulation Cascade Accelerated on GPU

Simulation of a bounded symport/antiport P system with Brane calculi.

artículo científico publicado en 2007

Simulation of the Ras/cAMP/PKA pathway in budding yeast highlights the establishment of stable oscillatory states.

artículo científico publicado en 2011

Single-cell Digital Twins for Cancer Preclinical Investigation

artículo científico publicado en 2020

Social media and mobile applications in chronic disease prevention and management

artículo científico publicado en 2015

Space complexity equivalence of P systems with active membranes and Turing machines

Spectral-based printer modeling and characterization

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data

artículo científico publicado en 2017

Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays

Stochastic Simulations on a Grid Framework for Parameter Sweep Applications in Biological Models

Sublinear-Space P Systems with Active Membranes

article published in 2013

Subroutines in P systems and closure properties of their complexity classes

Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling

artículo científico publicado en 2020

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data. ⬇️

artículo científico publicado en 2016

Tau Leaping Stochastic Simulation Method in P Systems

article published in 2006

The counting power of P systems with antimatter

The genopolis microarray database

artículo científico publicado en 2007

The interplay of intrinsic and extrinsic bounded noises in biomolecular networks

artículo científico publicado en 2013

The l -Diversity problem: Tractability and approximability

The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae

artículo científico publicado en 2012

Three efficient algorithms for counting problems

Tissue P Systems Can be Simulated Efficiently with Counting Oracles

Tissue P Systems with Small Cell Volume

Trend of FEV1 in Cystic Fibrosis patients: A telehomecare experience

scholarly article published June 2016

Tumor size, stage and grade alterations of urinary peptidome in RCC.

artículo científico publicado en 2015

Uniform solutions to SAT and Subset Sum by spiking neural P systems

Urinary signatures of Renal Cell Carcinoma investigated by peptidomic approaches.

artículo científico publicado en 2014

Using Subtree Crossover Distance to Investigate Genetic Programming Dynamics

article

Using genetic algorithms for spectral-based printer characterization

scholarly article published 20 January 2003

Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes

artículo científico publicado en 2004

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models

artículo científico publicado en 2016

cuProCell: GPU-accelerated analysis of cell proliferation with flow cytometry data

artículo científico publicado en 2020

cuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems

artículo científico publicado en 2014

m-Asynchronous cellular automata: from fairness to quasi-fairness

mHealth and eHealth for Obesity and Types 2 and 1 Diabetes

artículo científico publicado en 2016

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.

artículo científico publicado en 2017

Dominio Público Uruguay está sostenido por:

Acerca de Dominio Público Uruguay

Ayuda