Lista de obras - Tomaž Curk - Dominio Público Uruguay

A systems view of spliceosomal assembly and branchpoints with iCLIP

scientific article published on 30 September 2019

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning

artículo científico publicado en 2019

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

artículo científico publicado en 2012

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.

artículo científico publicado en 2011

Aubergine iCLIP Reveals piRNA-Dependent Decay of mRNAs Involved in Germ Cell Development in the Early Embryo

artículo científico publicado en 2015

Author Correction: A systems view of spliceosomal assembly and branchpoints with iCLIP

artículo científico publicado en 2020

BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.

artículo científico publicado en 2011

CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function

artículo científico publicado en 2012

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

artículo científico publicado en 2011

Combinations of susceptibility genes are associated with higher risk for multiple sclerosis and imply disease course specificity

artículo científico publicado en 2015

Comprehensive Identification of RNA-Binding Domains in Human Cells.

artículo científico publicado en 2016

Conserved developmental transcriptomes in evolutionarily divergent species.

artículo científico publicado en 2010

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt

artículo científico publicado en 2015

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

artículo científico

Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population

artículo científico publicado en 2015

Developmentally regulated DNA methylation in Dictyostelium discoideum

artículo científico publicado en 2006

Differential expression of microRNAs and other small RNAs in muscle tissue of patients with ALS and healthy age-matched controls

artículo científico publicado en 2018

Erratum to: Insights into the design and interpretation of iCLIP experiments.

artículo científico publicado en 2017

Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.

artículo científico publicado en 2016

FASTKD2 is an RNA-binding protein required for mitochondrial RNA processing and translation

artículo científico publicado en 2015

GenePath: a system for inference of genetic networks and proposal of genetic experiments.

artículo científico publicado en 2003

Heterogeneous computing architecture for fast detection of SNP-SNP interactions

artículo científico publicado en 2014

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43.

artículo científico publicado en 2017

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap.

artículo científico publicado en 2017

Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP

artículo científico publicado en 2015

Insights into the design and interpretation of iCLIP experiments

artículo científico publicado en 2017

Metabolomic profiling of CHO fed-batch growth phases at 10, 100, and 1,000 L

artículo científico publicado en 2019

Microarray data mining with visual programming.

artículo científico publicado en 2004

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

artículo científico publicado en 2016

Polygenic analysis and targeted improvement of the complex trait of high acetic acid tolerance in the yeast Saccharomyces cerevisiae.

artículo científico publicado en 2016

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

artículo científico publicado en 2007

Promiscuous RNA binding ensures effective encapsidation of APOBEC3 proteins by HIV-1.

artículo científico publicado en 2015

Rbfox2-coordinated alternative splicing of Mef2d and Rock2 controls myoblast fusion during myogenesis

artículo científico publicado en 2014

Recursive splicing in long vertebrate genes

artículo científico publicado en 2015

SNPsyn: detection and exploration of SNP-SNP interactions.

artículo científico publicado en 2011

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.

artículo científico publicado en 2016

TA-clustering: cluster analysis of gene expression profiles through Temporal Abstractions.

artículo científico publicado en 2005

The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.

artículo científico publicado en 2012

The RNA-binding protein HuR is essential for the B cell antibody response.

artículo científico publicado en 2015

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

artículo científico publicado en 2015

The differential expression of alternatively polyadenylated transcripts is a common stress-induced response mechanism that modulates mammalian mRNA expression in a quantitative and qualitative fashion

artículo científico publicado en 2016

Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells.

artículo científico publicado en 2017

Unravelling the RNA-Binding Properties of SAFB Proteins in Breast Cancer Cells.

artículo científico publicado en 2015

VizRank: finding informative data projections in functional genomics by machine learning.

artículo científico publicado en 2004

Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain

artículo científico publicado en 2012

Yeast Saccharomyces cerevisiae adiponectin receptor homolog Izh2 is involved in the regulation of zinc, phospholipid and pH homeostasis

artículo científico publicado en 2015

Yeast as a cell factory: current state and perspectives.

artículo científico publicado en 2015

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

artículo científico publicado en 2009

iCLIP identifies novel roles for SAFB1 in regulating RNA processing and neuronal function

artículo científico publicado en 2015

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

artículo científico publicado en 2010

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

artículo científico publicado en 2010

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

artículo científico publicado en 2011

Lista de obras de Tomaž Curk

A systems view of spliceosomal assembly and branchpoints with iCLIP

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.

Aubergine iCLIP Reveals piRNA-Dependent Decay of mRNAs Involved in Germ Cell Development in the Early Embryo

Author Correction: A systems view of spliceosomal assembly and branchpoints with iCLIP

BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.

CELF4 regulates translation and local abundance of a vast set of mRNAs, including genes associated with regulation of synaptic function

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

Combinations of susceptibility genes are associated with higher risk for multiple sclerosis and imply disease course specificity

Comprehensive Identification of RNA-Binding Domains in Human Cells.

Conserved developmental transcriptomes in evolutionarily divergent species.

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population

Developmentally regulated DNA methylation in Dictyostelium discoideum

Differential expression of microRNAs and other small RNAs in muscle tissue of patients with ALS and healthy age-matched controls

Erratum to: Insights into the design and interpretation of iCLIP experiments.

Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.

FASTKD2 is an RNA-binding protein required for mitochondrial RNA processing and translation

GenePath: a system for inference of genetic networks and proposal of genetic experiments.

Heterogeneous computing architecture for fast detection of SNP-SNP interactions

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43.

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap.

Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP

Insights into the design and interpretation of iCLIP experiments

Metabolomic profiling of CHO fed-batch growth phases at 10, 100, and 1,000 L

Microarray data mining with visual programming.

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

Polygenic analysis and targeted improvement of the complex trait of high acetic acid tolerance in the yeast Saccharomyces cerevisiae.

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

Promiscuous RNA binding ensures effective encapsidation of APOBEC3 proteins by HIV-1.

Rbfox2-coordinated alternative splicing of Mef2d and Rock2 controls myoblast fusion during myogenesis

Recursive splicing in long vertebrate genes

SNPsyn: detection and exploration of SNP-SNP interactions.

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.

TA-clustering: cluster analysis of gene expression profiles through Temporal Abstractions.

The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.

The RNA-binding protein HuR is essential for the B cell antibody response.

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

The differential expression of alternatively polyadenylated transcripts is a common stress-induced response mechanism that modulates mammalian mRNA expression in a quantitative and qualitative fashion

Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells.

Unravelling the RNA-Binding Properties of SAFB Proteins in Breast Cancer Cells.

VizRank: finding informative data projections in functional genomics by machine learning.

Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain

Yeast Saccharomyces cerevisiae adiponectin receptor homolog Izh2 is involved in the regulation of zinc, phospholipid and pH homeostasis

Yeast as a cell factory: current state and perspectives.

dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

iCLIP identifies novel roles for SAFB1 in regulating RNA processing and neuronal function

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.