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Lista de obras de Janet K Jansson

'Omics' of the mammalian gut--new insights into function

artículo científico

A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.

artículo científico publicado en 2018

A communal catalogue reveals Earth's multiscale microbial diversity

artículo científico publicado en 2017

A framework for human microbiome research

artículo científico publicado en 2012

A multi-omic future for microbiome studies

artículo científico publicado en 2016

A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes

artículo científico publicado en 2010

A unified conceptual framework for prediction and control of microbiomes

scholarly article by James C Stegen et al published August 2018 in Current Opinion in Microbiology

ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data

artículo científico publicado en 2017

ATLAS (Automatic Tool for Local Assembly Structures) - a comprehensive infrastructure for assembly, annotation, and genomic binning of metagenomic and metatranscriptomic data

artículo científico publicado en 2017

Active bacterial community structure along vertical redox gradients in Baltic Sea sediment.

artículo científico publicado en 2008

Adaptation of the psychrotroph Arthrobacter chlorophenolicus A6 to growth temperature and the presence of phenols by changes in the anteiso/iso ratio of branched fatty acids

artículo científico publicado en 2007

Advances in preservation methods: keeping biosensor microorganisms alive and active

artículo científico publicado en 2005

Agulhas Current properties shape microbial community diversity and potential functionality.

artículo científico publicado en 2018

Alterations in the relative abundance of Faecalibacterium prausnitzii correlate with changes in fecal calprotectin in patients with ileal Crohn's disease: a longitudinal study

scientific article published on 19 May 2019

Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies.

artículo científico publicado en 2013

Antifungal and Root Surface Colonization Properties of GFP-Tagged Paenibacillus brasilensis PB177

article published in 2005

Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities

scientific article published on 03 April 2014

Attachment of different soil bacteria to arbuscular mycorrhizal fungal extraradical hyphae is determined by hyphal vitality and fungal species

artículo científico publicado en 2006

Back to the Future of Soil Metagenomics

artículo científico publicado en 2016

Biomarkers for monitoring efficacy of bioremediation by microbial inoculants.

artículo científico publicado en 2000

Both the intratumoral immune and microbial microenvironment are linked to recurrence in human colon cancer: results from a prospective, multicenter nodal ultrastaging trial

artículo científico publicado en 2018

Changes in active bacterial communities before and after dredging of highly polluted Baltic Sea sediments

artículo científico publicado en 2006

Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils

artículo científico publicado en 2015

Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea

artículo científico publicado en 2010

Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil

artículo científico publicado en 2009

Climate change microbiology - problems and perspectives

artículo científico publicado en 2019

Clindamycin-induced enrichment and long-term persistence of resistant Bacteroides spp. and resistance genes

artículo científico publicado en 2006

Combined bromodeoxyuridine immunocapture and terminal-restriction fragment length polymorphism analysis highlights differences in the active soil bacterial metagenome due to Glomus mosseae inoculation or plant species

artículo científico publicado en 2005

Community structure of actively growing bacterial populations in plant pathogen suppressive soil

artículo científico publicado en 2006

Complete Genome Sequence of Bacillus amyloliquefaciens Strain Co1-6, a Plant Growth-Promoting Rhizobacterium of Calendula officinalis

artículo científico publicado en 2015

Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2.

artículo científico publicado en 2014

Consent insufficient for data release-Response

artículo científico publicado en 2019

Current understanding of the human microbiome.

artículo científico publicado en 2018

Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules

scientific article published on 07 July 2020

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

artículo científico publicado en 2012

Deep-sea oil plume enriches indigenous oil-degrading bacteria

artículo científico publicado en 2010

Degradation of 4-chlorophenol at low temperature and during extreme temperature fluctuations by Arthrobacter chlorophenolicus A6.

artículo científico publicado en 2004

Degradation of mixtures of phenolic compounds by Arthrobacter chlorophenolicus A6.

artículo científico publicado en 2007

Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste.

artículo científico publicado en 2007

Diets high in resistant starch increase plasma levels of trimethylamine-N-oxide, a gut microbiome metabolite associated with CVD risk

artículo científico publicado en 2016

Direct cellular lysis/protein extraction protocol for soil metaproteomics

artículo científico publicado en 2010

Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates

article

Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities

artículo científico publicado en 2018

Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities

scholarly article published 13 February 2018

Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

artículo científico publicado en 2015

Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments

artículo científico publicado en 2015

Diverse tumour susceptibility in Collaborative Cross mice: identification of a new mouse model for human gastric tumourigenesis

artículo científico publicado en 2019

Diversity, stability and resilience of the human gut microbiota

artículo científico publicado en 2012

Draft Genome Sequence of Paenibacillus polymyxa Strain Mc5Re-14, an Antagonistic Root Endophyte of Matricaria chamomilla.

artículo científico publicado en 2015

Draft Genome Sequence of Streptomyces sp. Strain Wb2n-11, a Desert Isolate with Broad-Spectrum Antagonism against Soilborne Phytopathogens

artículo científico publicado en 2015

Dynamics of the human gut microbiome in inflammatory bowel disease.

artículo científico publicado en 2017

EMP Sample Submission Guide v1 (protocols.io.pfqdjmw)

Early-Career Scientists Shaping the World

scientific article published on 07 May 2019

Earth Microbiome Project and Global Systems Biology

artículo científico publicado en 2018

Effect of heat stress on cell activity and cell morphology of the tropical rhizobium, Sinorhizobium arboris

artículo científico publicado en 2001

Effect of heat stress on cell activity and cell morphology of the tropical rhizobium, Sinorhizobium arboris.

artículo científico publicado en 2001

Erratum to: Marker and reporter genes: illuminating tools for environmental microbiologists

article

Erratum: Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

scholarly article published in The ISME Journal

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

artículo científico publicado en 2014

Faculty of 1000 evaluation for Soil aggregates as massively concurrent evolutionary incubators

Fecal microbiome of growing pigs fed a cereal based diet including chicory (Cichorium intybus L.) or ribwort (Plantago lanceolata L.) forage

artículo científico publicado en 2015

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

artículo científico publicado en 2014

Gut Microbial Alterations Associated With Protection From Autoimmune Uveitis

artículo científico publicado en 2016

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice

artículo científico publicado en 2019

Human microbiome science: vision for the future, Bethesda, MD, July 24 to 26, 2013

artículo científico publicado en 2014

Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice

artículo científico publicado en 2015

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

artículo científico publicado en 2017

Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest.

artículo científico publicado en 2014

Impact of phenolic substrate and growth temperature on the Arthrobacter chlorophenolicus proteome

artículo científico publicado en 2009

Impact of temperature on the physiological status of a potential bioremediation inoculant, Arthrobacter chlorophenolicus A6.

artículo científico publicado en 2004

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys ⬇️

artículo científico publicado en 2015

In vivo study of trichoderma-pathogen-plant interactions, using constitutive and inducible green fluorescent protein reporter systems

artículo científico publicado en 2004

Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership

artículo científico publicado en 2017

Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome.

artículo científico publicado en 2016

Insights into the respiratory tract microbiota of patients with cystic fibrosis during early Pseudomonas aeruginosa colonization

artículo científico publicado en 2015

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

artículo científico publicado en 2012

Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes

artículo científico publicado en 2022

Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth

artículo científico publicado en 2006

Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples

artículo científico publicado en 2019

Landscape topography structures the soil microbiome in arctic polygonal tundra

artículo científico publicado en 2018

Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

artículo científico publicado en 2007

Long-term impacts of antibiotic exposure on the human intestinal microbiota

scientific article published on 12 August 2010

Luminometry and PCR-based monitoring of gene-tagged cyanobacteria in Baltic Sea microcosms

artículo científico publicado en 1995

Luminometry and PCR-based monitoring of gene-tagged cyanobacteria in Baltic Sea microcosms

scientific article published in 1995

Marker and reporter genes: illuminating tools for environmental microbiologists

artículo científico publicado en 2003

MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data

artículo científico publicado en 2017

MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data

artículo científico publicado en 2017

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

artículo científico publicado en 2021

Meta-analyses of studies of the human microbiota

artículo científico publicado en 2013

Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

artículo científico publicado en 2016

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill

artículo científico publicado en 2017

Metabolomics reveals metabolic biomarkers of Crohn's disease

artículo científico publicado en 2009

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

artículo científico publicado en 2012

Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA

artículo científico publicado en 2022

Metagenomes from two microbial consortia associated with Santa Barbara seep oil.

artículo científico publicado en 2014

Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes.

artículo científico

Metagenomic Insights into the Degradation of Resistant Starch by Human Gut Microbiota

artículo científico publicado en 2018

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

artículo científico publicado en 2011

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

artículo científico publicado en 2014

Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions.

artículo científico publicado en 2017

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

artículo científico publicado en 2014

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments

artículo científico publicado en 2016

Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations.

artículo científico publicado en 2019

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes

artículo científico publicado en 2019

Microbes in thawing permafrost: the unknown variable in the climate change equation

artículo científico publicado en 2011

Microbial Community Structure and Functional Potential Along a Hypersaline Gradient

artículo científico publicado en 2018

Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States

artículo científico publicado en 2018

Microbial and viral-like rhodopsins present in coastal marine sediments from four polar and subpolar regions

artículo científico publicado en 2016

Microbial community structure in polluted Baltic Sea sediments.

artículo científico publicado en 2006

Microbial ecology of chlorinated solvent biodegradation

artículo científico publicado en 2014

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

artículo científico publicado en 2011

Microbiology: The life beneath our feet

artículo científico publicado en 2013

Microbiome-wide association studies link dynamic microbial consortia to disease

artículo científico publicado en 2016

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

artículo científico publicado en 2011

Moisture modulates soil reservoirs of active DNA and RNA viruses

artículo científico publicado en 2021

Molecular analysis of the gut microbiota of identical twins with Crohn's disease

artículo científico publicado en 2008

Molecular characterization of the stomach microbiota in patients with gastric cancer and in controls

artículo científico publicado en 2009

Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles

artículo científico publicado en 2007

Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes

artículo científico publicado en 2016

Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism

artículo científico publicado en 2005

Monitoring physiological status of GFP-tagged Pseudomonas fluorescens SBW25 under different nutrient conditions and in soil by flow cytometry

artículo científico publicado en 2004

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

artículo científico publicado en 2015

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

scientific article published on 29 May 2019

Novel 4-chlorophenol degradation gene cluster and degradation route via hydroxyquinol in Arthrobacter chlorophenolicus A6.

artículo científico publicado en 2005

Omics for understanding microbial functional dynamics

artículo científico publicado en 2011

Permafrost as a potential pathogen reservoir

artículo científico publicado en 2022

Phyllostomid bat microbiome composition is associated to host phylogeny and feeding strategies

artículo científico publicado en 2015

Predominance and high diversity of genes associated to denitrification in metagenomes of subantarctic coastal sediments exposed to urban pollution

artículo científico publicado en 2018

Prospecting Biotechnologically-Relevant Monooxygenases from Cold Sediment Metagenomes: An In Silico Approach

artículo científico publicado en 2017

Quantification of genetically tagged cyanobacteria in Baltic Sea sediment by competitive PCR.

artículo científico publicado en 1997

Quantification of the presence and activity of specific microorganisms in nature ⬇️

artículo científico publicado el 1 de abril de 1997

Rapid lab-on-a-chip profiling of human gut bacteria

artículo científico publicado en 2007

Scientists' warning to humanity: microorganisms and climate change

scientific article published on 18 June 2019

Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

artículo científico publicado en 2010

Shotgun metaproteomics of the human distal gut microbiota

article

Siderophore profiling of co-habitating soil bacteria by ultra-high resolution mass spectrometry

artículo científico publicado en 2019

Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill

artículo científico publicado en 2014

Soft inertial microfluidics for high throughput separation of bacteria from human blood cells

artículo científico publicado en 2009

Soil Metagenomics

Soil Metagenomics

Soil microbiomes and climate change

scientific article published on 04 October 2019

Soil viral diversity, ecology and climate change

artículo científico publicado en 2022

Spatial distribution of prokaryotic communities in hypersaline soils

artículo científico publicado en 2019

Specific interactions between arbuscular mycorrhizal fungi and plant growth-promoting bacteria: as revealed by different combinations

article

Spotlight on… Janet K. Jansson

artículo científico publicado en 2016

Stewards of a changing planet: commentaries from ISME13 Plenary Lecturers

artículo científico publicado en 2010

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

artículo científico publicado en 2011

Structural characterization of a soil viral auxiliary metabolic gene product – a functional chitosanase

artículo científico publicado en 2022

Structure, function and diversity of the healthy human microbiome

artículo científico publicado en 2012

Tackling soil diversity with the assembly of large, complex metagenomes

artículo científico publicado en 2014

Temporal dynamics of hot desert microbial communities reveal structural and functional responses to water input

scientific article published on 29 September 2016

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.

artículo científico publicado en 2010

The Earth Microbiome project: successes and aspirations

artículo científico publicado en 2014

The MPLEx Protocol for Multi-omic Analyses of Soil Samples

artículo científico publicado en 2018

The founding charter of the Genomic Observatories Network

artículo científico publicado en 2014

The microbial ecology of permafrost.

artículo científico publicado en 2014

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments.

artículo científico publicado en 2014

The past, present and future of microbiome analyses

The soil microbiome-from metagenomics to metaphenomics

artículo científico publicado en 2018

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Tools for the Microbiome: Nano and Beyond

artículo científico publicado en 2015

Toward unrestricted use of public genomic data:

artículo científico publicado en 2019

Tracking genetically engineered microorganisms in nature.

artículo científico publicado en 1995

Trade-offs between microbiome diversity and productivity in a stratified microbial mat.

artículo científico publicado en 2016

Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease

article by Ben Willing et al published May 2009 in Inflammatory Bowel Diseases

Unlocking the potential of metagenomics through replicated experimental design

artículo científico publicado en 2012

Use of a novel nonantibiotic triple marker gene cassette to monitor high survival of Pseudomonas fluorescens SBW25 on winter wheat in the field

artículo científico publicado en 2007

Use of bromodeoxyuridine immunocapture to identify active bacteria associated with arbuscular mycorrhizal hyphae

artículo científico publicado en 2003

Use of bromodeoxyuridine immunocapture to identify psychrotolerant phenanthrene-degrading bacteria in phenanthrene-enriched polluted Baltic Sea sediments.

artículo científico publicado en 2008

Use of green fluorescent protein and luciferase biomarkers to monitor survival and activity of Arthrobacter chlorophenolicus A6 cells during degradation of 4-chlorophenol in soil.

artículo científico publicado en 2001

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