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Lista de obras de Geoffrey J. Barton

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides

artículo científico publicado en 2015

3Dee: a database of protein structural domains

artículo científico publicado en 2001

A Dictyostelium SH2 adaptor protein required for correct DIF-1 signaling and pattern formation

artículo científico publicado en 2011

A comparison of SCOP and CATH with respect to domain-domain interactions

scientific article published on 01 January 2008

A new family of transcription factors

artículo científico publicado en 2008

A normalised scale for structural genomics target ranking: the OB-Score

artículo científico

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

artículo científico publicado en 2011

A structural analysis of phosphate and sulphate binding sites in proteins. Estimation of propensities for binding and conservation of phosphate binding sites

artículo científico publicado en 1994

A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase

A unified analysis of evolutionary and population constraint in protein domains highlights structural features and pathogenic sites

artículo científico publicado en 2024

AlmostSignificant: Simplifying quality control of high-throughput sequencing data

scholarly article published 16 May 2016

Amino acid sequence analysis of the annexin super-gene family of proteins

artículo científico publicado en 1991

An SH2-SH3 domain hybrid.

artículo científico publicado en 1993

An efficient algorithm to locate all locally optimal alignments between two sequences allowing for gaps.

artículo científico publicado en 1993

Analysis of human small nucleolar RNAs (snoRNA) and the development of snoRNA modulator of gene expression vectors

artículo científico publicado en 2010

Ankyrin repeats in context with human population variation

artículo científico publicado en 2021

Biological Units and their Effect upon the Properties and Prediction of Protein–Protein Interactions

artículo científico publicado en 2006

Characterization and prediction of protein nucleolar localization sequences.

artículo científico publicado en 2010

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

scientific article published on 14 April 2022

Classification and functional annotation of eukaryotic protein kinases

artículo científico publicado en 2007

Classification of likely functional class for ligand binding sites identified from fragment screening

artículo científico publicado en 2024

Computational approaches to selecting and optimising targets for structural biology

artículo científico publicado en 2011

Computer speed and sequence comparison

scientific article published in Science

Conservation analysis and structure prediction of the SH2 family of phosphotyrosine binding domains

artículo científico publicado el 8 de junio de 1992

Conservation analysis and structure prediction of the protein serine/threonine phosphatases. Sequence similarity with diadenosine tetraphosphatase from Escherichia coli suggests homology to the protein phosphatases.

artículo científico publicado en 1994

Conservation of amino acids in multiple alignments: aspartic acid has unexpected conservation

article

Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions

artículo científico publicado en 1995

Creation and analysis of protein multiple sequence alignments

scientific article published on 01 January 2001

Deposition of Macromolecular Structures

artículo científico publicado en 1998

Detection and Mitigation of Spurious Antisense RNA-seq Reads with RoSA

scholarly article published 26 September 2018

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

artículo científico publicado en 2012

Distinct donor and acceptor specificities of Trypanosoma brucei oligosaccharyltransferases

artículo científico publicado en 2009

Draft genome of the filarial nematode parasite Brugia malayi

artículo científico publicado en 2007

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

artículo científico publicado en 2007

E-MSD: an integrated data resource for bioinformatics.

artículo científico publicado en 2004

Elevated O-GlcNAc levels activate epigenetically repressed genes and delay mouse ESC differentiation without affecting naïve to primed cell transition.

artículo científico publicado en 2014

Emerging roles of pseudokinases

artículo científico publicado en 2006

Estimation of P-values for global alignments of protein sequences

artículo científico publicado en 2001

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction.

artículo científico publicado en 1999

Evaluation and improvements in the automatic alignment of protein sequences

artículo científico publicado en 1987

Expression, purification, crystallization, data collection and preliminary biochemical characterization of methicillin-resistant Staphylococcus aureus Sar2028, an aspartate/tyrosine/phenylalanine pyridoxal-5'-phosphate-dependent aminotransferase

artículo científico publicado en 2007

Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis

artículo científico publicado en 2014

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

artículo científico publicado en 2009

Flexible protein sequence patterns

artículo científico publicado en 1990

GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

artículo científico publicado en 2004

Genome analysis of the unicellular green alga Chlamydomonas reinhardtii Indicates an ancient evolutionary origin for key pattern recognition and cell-signaling protein families

artículo científico publicado en 2008

Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus

artículo científico publicado en 2011

Haploinsufficiency for AAGAB causes clinically heterogeneous forms of punctate palmoplantar keratoderma.

artículo científico publicado en 2012

High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli

artículo científico publicado en 2010

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

artículo científico publicado en 2016

How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana

article

How well do RNA-Seq differential gene expression tools perform in a eukaryote with a complex transcriptome?

article

Human Missense Variation is Constrained by Domain Structure and Highlights Functional and Pathogenic Residues

scholarly article published 12 April 2017

Human box C/D snoRNA processing conservation across multiple cell types

artículo científico publicado en 2011

Human miRNA precursors with box H/ACA snoRNA features

artículo científico publicado en 2009

Human platelet-derived endothelial cell growth factor is homologous to Escherichia coli thymidine phosphorylase

artículo científico publicado en 1992

Identification of a glycosylphosphatidylinositol anchor-modifying beta1-3 N-acetylglucosaminyl transferase in Trypanosoma brucei

artículo científico publicado en 2008

Identification of human miRNA precursors that resemble box C/D snoRNAs

artículo científico publicado en 2011

Identification of multiple distinct Snf2 subfamilies with conserved structural motifs.

artículo científico publicado en 2006

Identifying differential isoform abundance with RATs: a universal tool and a warning

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

artículo científico publicado en 2014

Increased coverage obtained by combination of methods for protein sequence database searching

artículo científico publicado en 2003

JABAWS 2.2 Distributed Web Services for Bioinformatics: Protein Disorder, Conservation and RNA Secondary Structure

artículo científico publicado en 2018

JPred4: a protein secondary structure prediction server

artículo científico publicado en 2015

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

artículo científico publicado en 2009

Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA

artículo científico publicado en 2011

Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases

artículo científico publicado en 2009

Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation

artículo científico publicado en 2012

MACSIMS: multiple alignment of complete sequences information management system

artículo científico publicado en 2006

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo

artículo científico publicado en 2014

Mast cell tryptases: examination of unusual characteristics by multiple sequence alignment and molecular modeling

artículo científico publicado en 1992

Missense variants in ACE2 are predicted to encourage and inhibit interaction with SARS-CoV-2 Spike and contribute to genetic risk in COVID-19

artículo científico publicado en 2020

Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants

scientific article published on 02 March 2022

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

artículo científico publicado en 1992

Mutational analysis of human papillomavirus E4 proteins: identification of structural features important in the formation of cytoplasmic E4/cytokeratin networks in epithelial cells ⬇️

artículo científico publicado el 1 de octubre de 1994

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and mA modification

scientific article published on 14 January 2020

NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins

artículo científico publicado en 2011

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy

artículo científico publicado en 2003

PGE(2) induces macrophage IL-10 production and a regulatory-like phenotype via a protein kinase A-SIK-CRTC3 pathway.

artículo científico publicado en 2012

PIMS sequencing extension: a laboratory information management system for DNA sequencing facilities

artículo científico publicado en 2011

PIPs: human protein-protein interaction prediction database

artículo científico publicado en 2008

PNAC: a protein nucleolar association classifier.

artículo científico publicado en 2011

PTEN protein phosphatase activity correlates with control of gene expression and invasion, a tumor-suppressing phenotype, but not with AKT activity

artículo científico publicado en 2012

ParCrys: a Parzen window density estimation approach to protein crystallization propensity prediction

artículo científico publicado en 2008

Prediction of antigenic determinants and secondary structures of the major AIDS virus proteins.

artículo científico publicado en 1987

Prediction of domain organisation and secondary structure of thyroid peroxidase, a human autoantigen involved in destructive thyroiditis

artículo científico publicado en 1990

Probabilistic prediction and ranking of human protein-protein interactions

artículo científico publicado en 2007

ProtEST: protein multiple sequence alignments from expressed sequence tags

artículo científico publicado en 2000

Protein fold recognition by mapping predicted secondary structures.

artículo científico publicado en 1996

Protein secondary structure prediction ⬇️

artículo científico publicado el 1 de junio de 1995

Protein sequence alignment techniques

artículo científico publicado en 1998

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation

artículo científico publicado en 1993

Protein structural domains: Analysis of the 3Dee domains database

article

Protein structure prediction

artículo científico publicado en 1993

Proteotoxic stress reprograms the chromatin landscape of SUMO modification.

artículo científico publicado en 2015

Proteus: an R package for downstream analysis of MaxQuant output

article

Purification, crystallization and data collection of methicillin-resistant Staphylococcus aureus Sar2676, a pantothenate synthetase

artículo científico publicado en 2007

Quantification of the variation in percentage identity for protein sequence alignments.

artículo científico publicado en 2006

Quantitative proteomics in resected renal cancer tissue for biomarker discovery and profiling.

artículo científico publicado en 2014

Re: Letter to the Editor Regarding Deposition of 3D Structural Studies of Biological Macromolecules

artículo científico publicado en 1998

Regulation of the miR-212/132 locus by MSK1 and CREB in response to neurotrophins

artículo científico publicado en 2010

Relative Abundance of Transcripts ( ): Identifying differential isoform abundance from RNA-seq

artículo científico publicado en 2019

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser

artículo científico publicado en 2008

SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions.

artículo científico publicado en 2007

Scanning protein sequence databanks using a distributed processing workstation network.

artículo científico publicado en 1991

Secondary structure prediction for modelling by homology

artículo científico publicado en 1993

Secondary structure prediction from multiple sequence data: blood clotting factor XIII and Yersinia protein-tyrosine phosphatase.

artículo científico publicado en 1994

Sequence alignment for molecular replacement

artículo científico

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

artículo científico publicado en 2015

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

artículo científico publicado en 1994

Structural similarity between the p17 matrix protein of HIV-1 and interferon-γ

artículo científico publicado en 1994

System-wide changes to SUMO modifications in response to heat shock

artículo científico publicado en 2009

TarO: a target optimisation system for structural biology

artículo científico publicado en 2008

The AMPS package for multiple protein sequence alignment

artículo científico publicado en 1994

The Dundee Resource for Sequence Analysis and Structure Prediction

scientific article published on 28 November 2019

The Jalview Java alignment editor

artículo científico publicado en 2004

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation

artículo científico publicado en 2013

The SWI/SNF complex acts to constrain distribution of the centromeric histone variant Cse4.

artículo científico publicado en 2011

The Scottish Structural Proteomics Facility: targets, methods and outputs

artículo científico publicado en 2010

The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe

artículo científico publicado en 2007

The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction

artículo científico publicado en 2008

The kinomes of apicomplexan parasites

artículo científico

The limits of protein secondary structure prediction accuracy from multiple sequence alignment.

artículo científico publicado en 1993

The structure of serine palmitoyltransferase; gateway to sphingolipid biosynthesis

artículo científico publicado en 2007

Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects

scientific journal article

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.

artículo científico publicado en 2013

Visual representation of database search results: the RHIMS Plot.

artículo científico publicado en 2003

Visualization of multiple alignments, phylogenies and gene family evolution

artículo científico publicado en 2010

Widespread premature transcription termination of Arabidopsis thaliana NLR genes by the spen protein FPA

scientific article published on 27 April 2021

XANNpred: neural nets that predict the propensity of a protein to yield diffraction-quality crystals

artículo científico publicado en 2011

[25] Protein multiple sequence alignment and flexible pattern matching

artículo científico publicado en 1990

[29] Identification of functional residues and secondary structure from protein multiple sequence alignment

artículo científico publicado en 1996

scop: structural classification of proteins

artículo científico publicado en 1994

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