Lista de obras - Jibin Sun - Dominio Público Uruguay

5S rRNA Promoter for Guide RNA Expression Enabled Highly Efficient CRISPR/Cas9 Genome Editing in Aspergillus niger

artículo científico publicado en 2018

A Library of <i>Aspergillus niger</i> Chassis Strains for Morphology Engineering Connects Strain Fitness and Filamentous Growth With Submerged Macromorphology

scientific article published on 01 January 2021

A Novel l-Glutamate Exporter of Corynebacterium glutamicum

artículo científico publicado en 2018

A food-grade expression system for d-psicose 3-epimerase production in Bacillus subtilis using an alanine racemase-encoding selection marker

artículo científico publicado en 2017

A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains

artículo científico publicado en 2012

A newly isolated and identified vitamin B12 producing strain: Sinorhizobium meliloti 320.

artículo científico publicado en 2016

A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis

artículo científico publicado en 2016

A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis

artículo científico publicado en 2006

A quantitative image analysis pipeline for the characterization of filamentous fungal morphologies as a tool to uncover targets for morphology engineering: a case study using aplD in Aspergillus niger.

artículo científico publicado en 2019

An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks

artículo científico publicado en 2011

Aspergillus niger as a potential cellular factory: prior knowledge and key technology

artículo científico publicado en 2010

Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp.

artículo científico publicado en 2009

Biofuel production by in vitro synthetic enzymatic pathway biotransformation

artículo científico publicado en 2010

Biomanufacturing: history and perspective

artículo científico publicado en 2016

Biosensor-Based Evolution and Elucidation of a Biosynthetic Pathway in Escherichia coli.

artículo científico publicado en 2017

Characterization of a new lysine decarboxylase from Aliivibrio salmonicida for cadaverine production at alkaline pH

Cloning of two 5-aminolevulinic acid synthase isozymes HemA and HemO from Rhodopseudomonas palustris with favorable characteristics for 5-aminolevulinic acid production

artículo científico publicado en 2013

Coevolutionary analysis enabled rational deregulation of allosteric enzyme inhibition in Corynebacterium glutamicum for lysine production

artículo científico publicado en 2011

Combined use of proteomic analysis and enzyme activity assays for metabolic pathway analysis of glycerol fermentation by Klebsiella pneumoniae

artículo científico publicado en 2003

Comparative genomic analysis of dha regulon and related genes for anaerobic glycerol metabolism in bacteria

artículo científico publicado en 2003

Complete genome sequence and transcriptomic analysis of a novel marine strain Bacillus weihaiensis reveals the mechanism of brown algae degradation

artículo científico publicado en 2016

Complete genome sequence of Corynebacterium glutamicum B253, a Chinese lysine-producing strain

artículo científico publicado en 2015

Comprehensive Improvement of Sample Preparation Methodologies Facilitates Dynamic Metabolomics of Aspergillus niger

artículo científico publicado en 2018

Comprehensive optimization of the metabolomic methodology for metabolite profiling of Corynebacterium glutamicum

scientific article published on 06 June 2018

Comprehensively dissecting the hub regulation of PkaC on high-productivity and pellet macromorphology in citric acid producing Aspergillus niger

artículo científico publicado en 2022

Construction and Analysis of the Model of Energy Metabolism in E. coli ⬇️

artículo científico publicado el 30 de enero de 2013

Construction and structural analysis of integrated cellular network of Corynebacterium glutamicum

artículo científico publicado el 1 de mayo de 2012

Correction to: Functional exploration of co-expression networks identifies a nexus for modulating protein and citric acid titres in Aspergillus niger submerged culture

scientific article published on 17 December 2019

Determination of key enzymes for threonine synthesis through in vitro metabolic pathway analysis

artículo científico publicado en 2015

Developing a high-throughput screening method for threonine overproduction based on an artificial promoter

artículo científico publicado en 2015

Development of a CRISPR/Cas9 genome editing toolbox for Corynebacterium glutamicum

artículo científico publicado en 2017

Development of thermodynamic optimum searching (TOS) to improve the prediction accuracy of flux balance analysis

artículo científico publicado en 2012

Discovery and investigation of a new, second triose phosphate isomerase in Klebsiella pneumoniae

artículo científico publicado en 2006

Draft Genome Sequence of Lactococcus lactis subsp. lactis Strain YF11.

artículo científico publicado en 2013

Driving Green Growth: Innovation at the Tianjin Institute of Industrial Biotechnology

article

Engineering Corynebacterium glutamicum for methanol-dependent growth and glutamate production.

artículo científico publicado en 2018

Engineering of recombinant Escherichia coli cells co-expressing poly-γ-glutamic acid (γ-PGA) synthetase and glutamate racemase for differential yielding of γ-PGA

artículo científico publicado en 2013

Enhancement of the thermal and alkaline pH stability of Escherichia coli lysine decarboxylase for efficient cadaverine production

artículo científico publicado en 2018

Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions

artículo científico publicado en 2014

Evolving the L-lysine high-producing strain of Escherichia coli using a newly developed high-throughput screening method

artículo científico publicado en 2016

Exploring the allosteric mechanism of dihydrodipicolinate synthase by reverse engineering of the allosteric inhibitor binding sites and its application for lysine production

artículo científico publicado en 2012

Find_tfSBP: find thermodynamics-feasible and smallest balanced pathways with high yield from large-scale metabolic networks

artículo científico publicado en 2017

Functional characterization of the gene PA2384 in large-scale gene regulation in response to iron starvation in Pseudomonas aeruginosa

artículo científico publicado en 2007

Functional exploration of co-expression networks identifies a nexus for modulating protein and citric acid titres in Aspergillus niger submerged culture

scientific article published on 09 November 2019

GREACE-assisted adaptive laboratory evolution in endpoint fermentation broth enhances lysine production by Escherichia coli.

artículo científico publicado en 2019

Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid

artículo científico publicado en 2011

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

artículo científico publicado en 2007

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data

artículo científico publicado en 2005

Heterologous and endogenous U6 snRNA promoters enable CRISPR/Cas9 mediated genome editing in Aspergillus niger

artículo científico publicado en 2018

High-throughput metagenomic analysis of petroleum-contaminated soil microbiome reveals the versatility in xenobiotic aromatics metabolism

artículo científico publicado en 2016

IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

artículo científico publicado en 2004

Identification of a new gene yecC involved in threonine export in Escherichia coli

artículo científico publicado en 2017

Improving the Production of L-Phenylalanine by Identifying Key Enzymes Through Multi-Enzyme Reaction System in Vitro

artículo científico publicado en 2016

In Vitro Optimization of Enzymes Involved in Precorrin-2 Synthesis Using Response Surface Methodology

artículo científico publicado en 2016

In-situ generation of large numbers of genetic combinations for metabolic reprogramming via CRISPR-guided base editing

artículo científico publicado en 2021

Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production.

artículo científico publicado en 2011

Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways

artículo científico publicado en 2004

MACBETH: Multiplex automated Corynebacterium glutamicum base editing method

artículo científico publicado en 2018

Metabolic Networks

Metabolic engineering of Escherichia coli for de novo biosynthesis of vitamin B12

scholarly article published 17 August 2018

Metabolic modelling of syntrophic-like growth of a 1,3-propanediol producer, Clostridium butyricum, and a methanogenic archeon, Methanosarcina mazei, under anaerobic conditions

artículo científico publicado en 2009

Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics

artículo científico publicado en 2007

Modeling and parameters identification of 2-keto-L-gulonic acid fed-batch fermentation

artículo científico publicado en 2014

Moulding the mould: understanding and reprogramming filamentous fungal growth and morphogenesis for next generation cell factories

artículo científico publicado en 2019

Multimer recognition and secretion by the non-classical secretion pathway in Bacillus subtilis

artículo científico publicado en 2017

Mutations on Peptidoglycan Synthesis Gene Improve Electro-transformation Efficiency of ATCC 13869

article

Non-sterilized fermentative production of polymer-grade L-lactic acid by a newly isolated thermophilic strain Bacillus sp. 2-6

artículo científico publicado en 2009

Novel (2R,3R)-2,3-butanediol dehydrogenase from potential industrial strain Paenibacillus polymyxa ATCC 12321.

artículo científico publicado en 2011

Overexpression of genes of the dha regulon and its effects on cell growth, glycerol fermentation to 1,3-propanediol and plasmid stability in Klebsiella pneumoniae

article

Production of 5-aminolevulinic acid by cell free multi-enzyme catalysis

artículo científico publicado en 2016

Promoter Screening from Bacillus subtilis in Various Conditions Hunting for Synthetic Biology and Industrial Applications

artículo científico publicado en 2016

Protein identification from two-dimensional gel electrophoresis analysis of Klebsiella pneumoniae by combined use of mass spectrometry data and raw genome sequences

artículo científico publicado en 2003

Proteomic characterization of transient expression and secretion of a stress-related metalloprotease in high cell density culture of Bacillus megaterium

article

ReacKnock: identifying reaction deletion strategies for microbial strain optimization based on genome-scale metabolic network

artículo científico publicado en 2013

Recent advances in directed evolution

artículo científico publicado en 2018

Study and reengineering of the binding sites and allosteric regulation of biosynthetic threonine deaminase by isoleucine and valine in Escherichia coli

artículo científico publicado en 2012

Tet-on, or Tet-off, that is the question: Advanced conditional gene expression in Aspergillus

artículo científico publicado en 2015

The 2008 update of the Aspergillus nidulans genome annotation: a community effort

artículo científico publicado en 2008

The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate

artículo científico publicado en 2010

Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey

artículo científico publicado en 2009

Lista de obras de Jibin Sun

5S rRNA Promoter for Guide RNA Expression Enabled Highly Efficient CRISPR/Cas9 Genome Editing in Aspergillus niger

A Library of <i>Aspergillus niger</i> Chassis Strains for Morphology Engineering Connects Strain Fitness and Filamentous Growth With Submerged Macromorphology

A Novel l-Glutamate Exporter of Corynebacterium glutamicum

A food-grade expression system for d-psicose 3-epimerase production in Bacillus subtilis using an alanine racemase-encoding selection marker

A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains

A newly isolated and identified vitamin B12 producing strain: Sinorhizobium meliloti 320.

A novel strategy for protein production using non-classical secretion pathway in Bacillus subtilis

A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis

A quantitative image analysis pipeline for the characterization of filamentous fungal morphologies as a tool to uncover targets for morphology engineering: a case study using aplD in Aspergillus niger.

An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks

Aspergillus niger as a potential cellular factory: prior knowledge and key technology

Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp.

Biofuel production by in vitro synthetic enzymatic pathway biotransformation

Biomanufacturing: history and perspective

Biosensor-Based Evolution and Elucidation of a Biosynthetic Pathway in Escherichia coli.

Characterization of a new lysine decarboxylase from Aliivibrio salmonicida for cadaverine production at alkaline pH

Cloning of two 5-aminolevulinic acid synthase isozymes HemA and HemO from Rhodopseudomonas palustris with favorable characteristics for 5-aminolevulinic acid production

Coevolutionary analysis enabled rational deregulation of allosteric enzyme inhibition in Corynebacterium glutamicum for lysine production

Combined use of proteomic analysis and enzyme activity assays for metabolic pathway analysis of glycerol fermentation by Klebsiella pneumoniae

Comparative genomic analysis of dha regulon and related genes for anaerobic glycerol metabolism in bacteria

Complete genome sequence and transcriptomic analysis of a novel marine strain Bacillus weihaiensis reveals the mechanism of brown algae degradation

Complete genome sequence of Corynebacterium glutamicum B253, a Chinese lysine-producing strain

Comprehensive Improvement of Sample Preparation Methodologies Facilitates Dynamic Metabolomics of Aspergillus niger

Comprehensive optimization of the metabolomic methodology for metabolite profiling of Corynebacterium glutamicum

Comprehensively dissecting the hub regulation of PkaC on high-productivity and pellet macromorphology in citric acid producing Aspergillus niger

Construction and Analysis of the Model of Energy Metabolism in E. coli ⬇️

Construction and structural analysis of integrated cellular network of Corynebacterium glutamicum

Correction to: Functional exploration of co-expression networks identifies a nexus for modulating protein and citric acid titres in Aspergillus niger submerged culture

Determination of key enzymes for threonine synthesis through in vitro metabolic pathway analysis

Developing a high-throughput screening method for threonine overproduction based on an artificial promoter

Development of a CRISPR/Cas9 genome editing toolbox for Corynebacterium glutamicum

Development of thermodynamic optimum searching (TOS) to improve the prediction accuracy of flux balance analysis

Discovery and investigation of a new, second triose phosphate isomerase in Klebsiella pneumoniae

Draft Genome Sequence of Lactococcus lactis subsp. lactis Strain YF11.

Driving Green Growth: Innovation at the Tianjin Institute of Industrial Biotechnology

Engineering Corynebacterium glutamicum for methanol-dependent growth and glutamate production.

Engineering of recombinant Escherichia coli cells co-expressing poly-γ-glutamic acid (γ-PGA) synthetase and glutamate racemase for differential yielding of γ-PGA

Enhancement of the thermal and alkaline pH stability of Escherichia coli lysine decarboxylase for efficient cadaverine production

Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions

Evolving the L-lysine high-producing strain of Escherichia coli using a newly developed high-throughput screening method

Exploring the allosteric mechanism of dihydrodipicolinate synthase by reverse engineering of the allosteric inhibitor binding sites and its application for lysine production

Find_tfSBP: find thermodynamics-feasible and smallest balanced pathways with high yield from large-scale metabolic networks

Functional characterization of the gene PA2384 in large-scale gene regulation in response to iron starvation in Pseudomonas aeruginosa

Functional exploration of co-expression networks identifies a nexus for modulating protein and citric acid titres in Aspergillus niger submerged culture

GREACE-assisted adaptive laboratory evolution in endpoint fermentation broth enhances lysine production by Escherichia coli.

Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data

Heterologous and endogenous U6 snRNA promoters enable CRISPR/Cas9 mediated genome editing in Aspergillus niger

High-throughput metagenomic analysis of petroleum-contaminated soil microbiome reveals the versatility in xenobiotic aromatics metabolism

IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

Identification of a new gene yecC involved in threonine export in Escherichia coli

Improving the Production of L-Phenylalanine by Identifying Key Enzymes Through Multi-Enzyme Reaction System in Vitro

In Vitro Optimization of Enzymes Involved in Precorrin-2 Synthesis Using Response Surface Methodology

In-situ generation of large numbers of genetic combinations for metabolic reprogramming via CRISPR-guided base editing

Integrating molecular dynamics and co-evolutionary analysis for reliable target prediction and deregulation of the allosteric inhibition of aspartokinase for amino acid production.

Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways

MACBETH: Multiplex automated Corynebacterium glutamicum base editing method

Metabolic Networks

Metabolic engineering of Escherichia coli for de novo biosynthesis of vitamin B12

Metabolic modelling of syntrophic-like growth of a 1,3-propanediol producer, Clostridium butyricum, and a methanogenic archeon, Methanosarcina mazei, under anaerobic conditions

Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics

Modeling and parameters identification of 2-keto-L-gulonic acid fed-batch fermentation

Moulding the mould: understanding and reprogramming filamentous fungal growth and morphogenesis for next generation cell factories

Multimer recognition and secretion by the non-classical secretion pathway in Bacillus subtilis

Mutations on Peptidoglycan Synthesis Gene Improve Electro-transformation Efficiency of ATCC 13869

Non-sterilized fermentative production of polymer-grade L-lactic acid by a newly isolated thermophilic strain Bacillus sp. 2-6

Novel (2R,3R)-2,3-butanediol dehydrogenase from potential industrial strain Paenibacillus polymyxa ATCC 12321.

Overexpression of genes of the dha regulon and its effects on cell growth, glycerol fermentation to 1,3-propanediol and plasmid stability in Klebsiella pneumoniae

Production of 5-aminolevulinic acid by cell free multi-enzyme catalysis

Promoter Screening from Bacillus subtilis in Various Conditions Hunting for Synthetic Biology and Industrial Applications

Protein identification from two-dimensional gel electrophoresis analysis of Klebsiella pneumoniae by combined use of mass spectrometry data and raw genome sequences

Proteomic characterization of transient expression and secretion of a stress-related metalloprotease in high cell density culture of Bacillus megaterium

ReacKnock: identifying reaction deletion strategies for microbial strain optimization based on genome-scale metabolic network

Recent advances in directed evolution

Study and reengineering of the binding sites and allosteric regulation of biosynthetic threonine deaminase by isoleucine and valine in Escherichia coli

Tet-on, or Tet-off, that is the question: Advanced conditional gene expression in Aspergillus

The 2008 update of the Aspergillus nidulans genome annotation: a community effort

The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate