Lista de obras - Chi Zhang - Dominio Público Uruguay

A Comprehensive Image-based Phenomic Analysis Reveals the Complex Genetic Architecture of Shoot Growth Dynamics in Rice (Oryza sativa).

artículo científico publicado en 2017

A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize

artículo científico publicado en 2016

A dataset for assessing temporal changes in gene expression during the aging process of adult Drosophila melanogaster

artículo científico publicado en 2016

A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes

artículo científico publicado en 2005

A novel function prediction approach using protein overlap networks ⬇️

artículo científico publicado el 17 de julio de 2013

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.

artículo científico publicado en 2004

Accurate and efficient loop selections by the DFIRE-based all-atom statistical potential.

artículo científico publicado en 2004

Allelic variants of OsHKT1;1 underlie the divergence between indica and japonica subspecies of rice (Oryza sativa) for root sodium content.

artículo científico publicado en 2017

An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

artículo científico publicado en 2004

Chemical and genetic variation in feral Cannabis sativa populations across the Nebraska climate gradient

artículo científico publicado en 2022

Conformational B-Cell Epitope Prediction on Antigen Protein Structures: A Review of Current Algorithms and Comparison with Common Binding Site Prediction Methods ⬇️

artículo científico publicado el 19 de abril de 2013

Deletion Mutagenesis and Identification of Causative Mutations in Maize.

artículo científico publicado en 2018

Deletion mutagenesis identifies a haploinsufficient role for γ-zein in opaque2 endosperm modification

artículo científico publicado en 2013

Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization.

artículo científico publicado en 2015

Distinct Pseudomonas type-III effectors use a cleavable transit peptide to target chloroplasts.

artículo científico publicado en 2013

Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function

artículo científico publicado en 2005

Domain Graph ofArabidopsisProteome by Comparative Analysis

article

Editing of an Alpha-Kafirin Gene Family Increases, Digestibility and Protein Quality in Sorghum

artículo científico publicado en 2018

Exomechip Analyses Identify Genes Affecting Mortality after HLA-Matched Unrelated Donor Blood and Marrow Transplantation.

artículo científico publicado en 2018

Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast.

artículo científico

Fast and accurate prediction of protein side-chain conformations ⬇️

artículo científico publicado el 27 de agosto de 2011

Fold recognition by concurrent use of solvent accessibility and residue depth

artículo científico publicado en 2007

Fuzzy clustering of CPP family in plants with evolution and interaction analyses

artículo científico publicado en 2013

Genetic and molecular characterization of submergence response identifies Subtol6 as a major submergence tolerance locus in maize

artículo científico publicado en 2015

Genome-Wide Gene Expression in relation to Age in Large Laboratory Cohorts of Drosophila melanogaster

artículo científico publicado en 2015

Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of Arabidopsis Thaliana.

artículo científico publicado en 2017

Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity.

artículo científico publicado en 2016

Identification of RNA silencing components in soybean and sorghum.

artículo científico publicado en 2014

Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

artículo científico publicado en 2014

Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing

artículo científico publicado en 2016

L1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier

artículo científico publicado en 2012

LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains

artículo científico publicado en 2013

MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities

artículo científico publicado en 2020

MADS78 and MADS79 Are Essential Regulators of Early Seed Development in Rice

scientific article published on 09 December 2019

Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum.

artículo científico publicado en 2016

Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana

artículo científico publicado en 2015

Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants

artículo científico publicado en 2022

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine.

artículo científico publicado en 2014

Prediction of Protein Phosphorylation Sites by Integrating Secondary Structure Information and Other One-Dimensional Structural Properties.

artículo científico publicado en 2017

Prediction of antigenic epitopes on protein surfaces by consensus scoring

artículo científico publicado en 2009

Prediction of immunogenicity for humanized and full human therapeutic antibodies

scientific article published on 31 August 2020

Protein Loop Modeling with Optimized Backbone Potential Functions

artículo científico publicado en 2012

Protein binding site prediction using an empirical scoring function

artículo científico publicado en 2006

Protein flexibility prediction by an all-atom mean-field statistical theory.

artículo científico publicado en 2005

Protein loop selection using orientation-dependent force fields derived by parameter optimization

artículo científico publicado en 2011

Proteomic profiling of maize opaque endosperm mutants reveals selective accumulation of lysine-enriched proteins.

artículo científico

Pyrophosphate-dependent fructose-6-phosphate 1-phosphotransferase induction and attenuation of Hsp gene expression during endosperm modification in quality protein maize

artículo científico publicado en 2011

Radiative Neutron β-Decay in Effective Field Theory.

artículo científico publicado en 2005

Scalable and physiologically relevant microenvironments for human pluripotent stem cell expansion and differentiation.

artículo científico publicado en 2018

Sharpening low-energy, standard-model tests via correlation coefficients in neutron beta decay

artículo científico publicado en 2001

Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.

artículo científico publicado en 2015

Temperature dependence of the distribution of the first passage time: results from discontinuous molecular dynamics simulations of an all-atom model of the second beta-hairpin fragment of protein G.

artículo científico publicado en 2003

The DNA- and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation

artículo científico publicado en 2012

The Pseudomonas syringae type III effector HopD1 suppresses effector-triggered immunity, localizes to the endoplasmic reticulum, and targets the Arabidopsis transcription factor NTL9.

artículo científico publicado en 2013

The dependence of all-atom statistical potentials on structural training database

artículo científico publicado en 2004

Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum.

artículo científico publicado en 2017

Virus-host mucosal interactions during early SIV rectal transmission.

artículo científico publicado en 2014

What is a desirable statistical energy function for proteins and how can it be obtained?

artículo científico publicado en 2006

Lista de obras de Chi Zhang

A Comprehensive Image-based Phenomic Analysis Reveals the Complex Genetic Architecture of Shoot Growth Dynamics in Rice (Oryza sativa).

A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize

A dataset for assessing temporal changes in gene expression during the aging process of adult Drosophila melanogaster

A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes

A novel function prediction approach using protein overlap networks ⬇️

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.

Accurate and efficient loop selections by the DFIRE-based all-atom statistical potential.

Allelic variants of OsHKT1;1 underlie the divergence between indica and japonica subspecies of rice (Oryza sativa) for root sodium content.

An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

Chemical and genetic variation in feral Cannabis sativa populations across the Nebraska climate gradient

Conformational B-Cell Epitope Prediction on Antigen Protein Structures: A Review of Current Algorithms and Comparison with Common Binding Site Prediction Methods ⬇️

Deletion Mutagenesis and Identification of Causative Mutations in Maize.

Deletion mutagenesis identifies a haploinsufficient role for γ-zein in opaque2 endosperm modification

Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization.

Distinct Pseudomonas type-III effectors use a cleavable transit peptide to target chloroplasts.

Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function

Domain Graph ofArabidopsisProteome by Comparative Analysis

Editing of an Alpha-Kafirin Gene Family Increases, Digestibility and Protein Quality in Sorghum

Exomechip Analyses Identify Genes Affecting Mortality after HLA-Matched Unrelated Donor Blood and Marrow Transplantation.

Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast.

Fast and accurate prediction of protein side-chain conformations ⬇️

Fold recognition by concurrent use of solvent accessibility and residue depth

Fuzzy clustering of CPP family in plants with evolution and interaction analyses

Genetic and molecular characterization of submergence response identifies Subtol6 as a major submergence tolerance locus in maize

Genome-Wide Gene Expression in relation to Age in Large Laboratory Cohorts of Drosophila melanogaster

Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of Arabidopsis Thaliana.

Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity.

Identification of RNA silencing components in soybean and sorghum.

Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

Insect and plant-derived miRNAs in greenbug (Schizaphis graminum) and yellow sugarcane aphid (Sipha flava) revealed by deep sequencing

L1pred: a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier

LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains

MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities

MADS78 and MADS79 Are Essential Regulators of Early Seed Development in Rice

Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum.

Osmotic stress induces phosphorylation of histone H3 at threonine 3 in pericentromeric regions of Arabidopsis thaliana

Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine.

Prediction of Protein Phosphorylation Sites by Integrating Secondary Structure Information and Other One-Dimensional Structural Properties.

Prediction of antigenic epitopes on protein surfaces by consensus scoring

Prediction of immunogenicity for humanized and full human therapeutic antibodies

Protein Loop Modeling with Optimized Backbone Potential Functions

Protein binding site prediction using an empirical scoring function

Protein flexibility prediction by an all-atom mean-field statistical theory.

Protein loop selection using orientation-dependent force fields derived by parameter optimization

Proteomic profiling of maize opaque endosperm mutants reveals selective accumulation of lysine-enriched proteins.

Pyrophosphate-dependent fructose-6-phosphate 1-phosphotransferase induction and attenuation of Hsp gene expression during endosperm modification in quality protein maize

Radiative Neutron β-Decay in Effective Field Theory.

Scalable and physiologically relevant microenvironments for human pluripotent stem cell expansion and differentiation.

Sharpening low-energy, standard-model tests via correlation coefficients in neutron beta decay

Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.

Temperature dependence of the distribution of the first passage time: results from discontinuous molecular dynamics simulations of an all-atom model of the second beta-hairpin fragment of protein G.

The DNA- and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation

The Pseudomonas syringae type III effector HopD1 suppresses effector-triggered immunity, localizes to the endoplasmic reticulum, and targets the Arabidopsis transcription factor NTL9.

The dependence of all-atom statistical potentials on structural training database

Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum.

Virus-host mucosal interactions during early SIV rectal transmission.

What is a desirable statistical energy function for proteins and how can it be obtained?