Lista de obras - Katrina M. Waters - Dominio Público Uruguay

A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry ⬇️

artículo científico publicado en 2014

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

artículo científico publicado en 2012

A compendium of multi-omics data illuminating host responses to lethal human virus infections

artículo científico publicado en 2024

A comprehensive collection of systems biology data characterizing the host response to viral infection.

artículo científico publicado en 2014

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses

artículo científico publicado en 2013

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.

artículo científico publicado en 2011

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

artículo científico publicado en 2010

AHR2 mutant reveals functional diversity of aryl hydrocarbon receptors in zebrafish

artículo científico publicado en 2012

Accumulation of CD11b⁺Gr-1⁺ cells in the lung, blood and bone marrow of mice infected with highly pathogenic H5N1 and H1N1 influenza viruses

artículo científico publicado en 2013

Analytics challenge---High-throughput visual analytics biological sciences

article

Annexin A2 modulates radiation-sensitive transcriptional programming and cell fate

scientific article published on 13 November 2012

Association of carcinogenic polycyclic aromatic hydrocarbon emissions and smoking with lung cancer mortality rates on a global scale.

artículo científico publicado en 2013

Atomic Force Microscopy and Infrared Nanospectroscopy of COVID-19 Spike Protein for the Quantification of Adhesion to Common Surfaces

artículo científico publicado en 2021

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

artículo científico publicado en 2014

Bone growth and turnover in progesterone receptor knockout mice

artículo científico publicado en 2008

Cellular dichotomy between anchorage-independent growth responses to bFGF and TPA reflects molecular switch in commitment to carcinogenesis.

artículo científico publicado en 2009

Combination Attenuation Offers Strategy for Live Attenuated Coronavirus Vaccines

scholarly article by Vineet D. Menachery published in September 2018

Combination attenuation offers strategy for live-attenuated coronavirus vaccines

scholarly article published 28 April 2018

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

artículo científico publicado en 2010

Comparative developmental toxicity of environmentally relevant oxygenated PAHs.

scientific article published on 14 May 2013

Comparative iron oxide nanoparticle cellular dosimetry and response in mice by the inhalation and liquid cell culture exposure routes

artículo científico publicado en 2014

Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice

artículo científico publicado en 2011

Completing the Link between Exposure Science and Toxicology for Improved Environmental Health Decision Making: The Aggregate Exposure Pathway Framework.

artículo científico publicado en 2016

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems

artículo científico publicado en 2011

Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation

artículo científico publicado en 2011

Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard.

artículo científico publicado en 2019

Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse

artículo científico publicado en 2015

DNA microarray analysis reveals a role for lysophosphatidic acid in the regulation of anti-inflammatory genes in MC3T3-E1 cells.

artículo científico

Data merging for integrated microarray and proteomic analysis

artículo científico publicado en 2006

Dibenzo[def,p]chrysene transplacental carcinogenesis in wild-type, Cyp1b1 knockout, and CYP1B1 humanized mice.

artículo científico publicado en 2016

Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin

artículo científico publicado en 2013

Differential gene expression in response to methoxychlor and estradiol through ERalpha, ERbeta, and AR in reproductive tissues of female mice.

artículo científico

Discovery of common chemical exposures across three continents using silicone wristbands

artículo científico publicado en 2019

Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics

artículo científico publicado en 2012

ERK oscillation-dependent gene expression patterns and deregulation by stress response

artículo científico publicado en 2014

Early life stage trimethyltin exposure induces ADP-ribosylation factor expression and perturbs the vascular system in zebrafish

artículo científico publicado en 2012

Effect of Native American fish smoking methods on dietary exposure to polycyclic aromatic hydrocarbons and possible risks to human health.

artículo científico publicado en 2012

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager

artículo científico publicado en 2007

Estrogen regulation of human osteoblast function is determined by the stage of differentiation and the estrogen receptor isoform.

artículo científico publicado en 2001

Expanding on Successful Concepts, Models, and Organization

artículo científico publicado en 2016

Genetic and epigenetic changes in chromosomally stable and unstable progeny of irradiated cells

artículo científico publicado en 2014

Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus

artículo científico publicado en 2011

How Adverse Outcome Pathways Can Aid the Development and Use of Computational Prediction Models for Regulatory Toxicology

artículo científico publicado en 2016

Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity

artículo científico publicado en 2013

Implications of Bioremediation of Polycyclic Aromatic Hydrocarbon-Contaminated Soils for Human Health and Cancer Risk.

artículo científico publicado en 2017

Improved quality control processing of peptide-centric LC-MS proteomics data

artículo científico publicado en 2011

Influenza-Omics and the Host Response: Recent Advances and Future Prospects

artículo científico publicado en 2017

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

artículo científico publicado en 2016

Integration of data systems and technology improves research and collaboration for a superfund research center.

artículo científico publicado en 2012

Integrative transcriptomic and proteomic analysis of osteocytic cells exposed to fluid flow reveals novel mechano-sensitive signaling pathways

artículo científico publicado en 2014

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

artículo científico publicado en 2008

Ligand-Specific Transcriptional Mechanisms Underlie Aryl Hydrocarbon Receptor-Mediated Developmental Toxicity of Oxygenated PAHs.

artículo científico publicado en 2015

Localization of a polyunsaturated fatty acid response region in stearoyl-CoA desaturase gene 1.

artículo científico publicado en 1997

MERS-CoV Accessory ORFs Play Key Role for Infection and Pathogenesis

artículo científico

MERS-CoV NSP16 necessary for IFN resistance and viral pathogenesis

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

artículo científico publicado en 2018

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling

artículo científico publicado en 2017

Macrophage responses to silica nanoparticles are highly conserved across particle sizes

artículo científico publicado en 2008

Mechanism-Based Classification of PAH Mixtures to Predict Carcinogenic Potential

artículo científico publicado en 2015

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

scientific article published on 06 August 2013

Middle East Respiratory Syndrome Coronavirus Nonstructural Protein 16 Is Necessary for Interferon Resistance and Viral Pathogenesis

artículo científico publicado en 2017

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

artículo científico publicado en 2017

Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data

artículo científico publicado en 2012

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data

scientific article published on 06 February 2019

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

artículo científico publicado en 2014

Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish

artículo científico publicado en 2016

Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation

artículo científico publicado en 2010

Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation

artículo científico publicado en 2012

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

artículo científico publicado en 2015

Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.

artículo científico publicado en 2008

Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.

artículo científico publicado en 2012

Quantitative proteomic analysis of mitochondrial proteins reveals prosurvival mechanisms in the perpetuation of radiation-induced genomic instability.

artículo científico publicado en 2012

Regulation of gene expression and subcellular protein distribution in MLO-Y4 osteocytic cells by lysophosphatidic acid: Relevance to dendrite outgrowth

artículo científico publicado en 2011

Regulation of hepatic stearoyl-CoA desaturase gene 1 by vitamin A

artículo científico publicado en 1997

Relative Influence of Trans-Pacific and Regional Atmospheric Transport of PAHs in the Pacific Northwest, U.S.

artículo científico publicado en 2015

Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

artículo científico publicado en 2013

Retinoic acid-dependent regulation of miR-19 expression elicits vertebrate axis defects.

artículo científico publicado en 2013

Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

artículo científico publicado en 2015

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies

artículo científico publicado en 2013

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

artículo científico publicado en 2016

Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling

artículo científico publicado en 2015

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

artículo científico publicado en 2013

Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network

scientific article published on 05 December 2019

Surface functionalities of gold nanoparticles impact embryonic gene expression responses.

artículo científico publicado en 2012

Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis

artículo científico publicado en 2011

Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics

artículo científico publicado en 2010

The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections

artículo científico publicado en 2019

The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus

artículo científico publicado en 2016

The effects of low-dose irradiation on inflammatory response proteins in a 3D reconstituted human skin tissue model.

artículo científico publicado en 2012

The landscape of viral proteomics and its potential to impact human health

artículo científico publicado en 2016

The mammary epithelial cell secretome and its regulation by signal transduction pathways

artículo científico publicado en 2008

The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity

scientific article published on 19 August 2020

Time-dependent behavioral data from zebrafish reveals novel signatures of chemical toxicity using point of departure analysis

artículo científico publicado en 2018

Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis

artículo científico publicado en 2012

Unified feature association networks through integration of transcriptomic and proteomic data

scientific article published on 17 September 2019

pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data

scientific article published on 28 January 2019

Lista de obras de Katrina M. Waters

A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry ⬇️

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

A compendium of multi-omics data illuminating host responses to lethal human virus infections

A comprehensive collection of systems biology data characterizing the host response to viral infection.

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

AHR2 mutant reveals functional diversity of aryl hydrocarbon receptors in zebrafish

Accumulation of CD11b⁺Gr-1⁺ cells in the lung, blood and bone marrow of mice infected with highly pathogenic H5N1 and H1N1 influenza viruses

Analytics challenge---High-throughput visual analytics biological sciences

Annexin A2 modulates radiation-sensitive transcriptional programming and cell fate

Association of carcinogenic polycyclic aromatic hydrocarbon emissions and smoking with lung cancer mortality rates on a global scale.

Atomic Force Microscopy and Infrared Nanospectroscopy of COVID-19 Spike Protein for the Quantification of Adhesion to Common Surfaces

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Bone growth and turnover in progesterone receptor knockout mice

Cellular dichotomy between anchorage-independent growth responses to bFGF and TPA reflects molecular switch in commitment to carcinogenesis.

Combination Attenuation Offers Strategy for Live Attenuated Coronavirus Vaccines

Combination attenuation offers strategy for live-attenuated coronavirus vaccines

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

Comparative developmental toxicity of environmentally relevant oxygenated PAHs.

Comparative iron oxide nanoparticle cellular dosimetry and response in mice by the inhalation and liquid cell culture exposure routes

Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice

Completing the Link between Exposure Science and Toxicology for Improved Environmental Health Decision Making: The Aggregate Exposure Pathway Framework.

Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems

Controlling the response: predictive modeling of a highly central, pathogen-targeted core response module in macrophage activation

Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard.

Cytochrome P450 1b1 in polycyclic aromatic hydrocarbon (PAH)-induced skin carcinogenesis: Tumorigenicity of individual PAHs and coal-tar extract, DNA adduction and expression of select genes in the Cyp1b1 knockout mouse

DNA microarray analysis reveals a role for lysophosphatidic acid in the regulation of anti-inflammatory genes in MC3T3-E1 cells.

Data merging for integrated microarray and proteomic analysis

Dibenzo[def,p]chrysene transplacental carcinogenesis in wild-type, Cyp1b1 knockout, and CYP1B1 humanized mice.

Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin

Differential gene expression in response to methoxychlor and estradiol through ERalpha, ERbeta, and AR in reproductive tissues of female mice.

Discovery of common chemical exposures across three continents using silicone wristbands

Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics

ERK oscillation-dependent gene expression patterns and deregulation by stress response

Early life stage trimethyltin exposure induces ADP-ribosylation factor expression and perturbs the vascular system in zebrafish

Effect of Native American fish smoking methods on dietary exposure to polycyclic aromatic hydrocarbons and possible risks to human health.

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager

Estrogen regulation of human osteoblast function is determined by the stage of differentiation and the estrogen receptor isoform.

Expanding on Successful Concepts, Models, and Organization

Genetic and epigenetic changes in chromosomally stable and unstable progeny of irradiated cells

Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus

How Adverse Outcome Pathways Can Aid the Development and Use of Computational Prediction Models for Regulatory Toxicology

Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity

Implications of Bioremediation of Polycyclic Aromatic Hydrocarbon-Contaminated Soils for Human Health and Cancer Risk.

Improved quality control processing of peptide-centric LC-MS proteomics data

Influenza-Omics and the Host Response: Recent Advances and Future Prospects

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

Integration of data systems and technology improves research and collaboration for a superfund research center.

Integrative transcriptomic and proteomic analysis of osteocytic cells exposed to fluid flow reveals novel mechano-sensitive signaling pathways

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

Ligand-Specific Transcriptional Mechanisms Underlie Aryl Hydrocarbon Receptor-Mediated Developmental Toxicity of Oxygenated PAHs.

Localization of a polyunsaturated fatty acid response region in stearoyl-CoA desaturase gene 1.

MERS-CoV Accessory ORFs Play Key Role for Infection and Pathogenesis

MERS-CoV NSP16 necessary for IFN resistance and viral pathogenesis

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling

Macrophage responses to silica nanoparticles are highly conserved across particle sizes

Mechanism-Based Classification of PAH Mixtures to Predict Carcinogenic Potential

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

Middle East Respiratory Syndrome Coronavirus Nonstructural Protein 16 Is Necessary for Interferon Resistance and Viral Pathogenesis

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish

Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation

Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.

Quantitative phosphoproteomics identifies filaggrin and other targets of ionizing radiation in a human skin model.

Quantitative proteomic analysis of mitochondrial proteins reveals prosurvival mechanisms in the perpetuation of radiation-induced genomic instability.

Regulation of gene expression and subcellular protein distribution in MLO-Y4 osteocytic cells by lysophosphatidic acid: Relevance to dendrite outgrowth

Regulation of hepatic stearoyl-CoA desaturase gene 1 by vitamin A

Relative Influence of Trans-Pacific and Regional Atmospheric Transport of PAHs in the Pacific Northwest, U.S.

Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

Retinoic acid-dependent regulation of miR-19 expression elicits vertebrate axis defects.

Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies