Lista de obras - Tunca Doğan - Dominio Público Uruguay

2-D Thresholding of the Connectivity Map Following the Multiple Sequence Alignments of Diverse Datasets

A Structural Perspective on the Modulation of Protein-Protein Interactions with Small Molecules

artículo científico publicado en 2018

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

artículo científico publicado en 2016

Annotation of biologically relevant ligands in UniProtKB using ChEBI

artículo científico publicado en 2022

Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences.

artículo científico publicado en 2013

CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

artículo científico publicado en 2020

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations

artículo científico publicado en 2021

DEEPScreen: High Performance Drug-Target Interaction Prediction with Convolutional Neural Networks Using 2-D Structural Compound Representations

artículo científico publicado en 2018

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

scientific article published on 08 January 2020

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

artículo científico publicado en 2019

Democratising Knowledge Representation with BioCypher

artículo científico publicado en 2022

Democratizing knowledge representation with BioCypher

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

scholarly article by Alperen Dalkiran published in September 2018

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences

article published in 2018

HPO2GO: prediction of human phenotype ontology term associations using cross ontology annotation co-occurrences

Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.

artículo científico publicado en 2017

MDeePred: Novel Multi-Channel protein featurization for deep learning based binding affinity prediction in drug discovery

artículo científico publicado en 2020

Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites

artículo científico publicado en 2018

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

artículo científico publicado en 2021

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

artículo científico publicado en 2019

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

scientific article published on 19 November 2019

Tools and data services registry: a community effort to document bioinformatics resources

artículo científico publicado en 2016

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB

artículo científico

iBioProVis: interactive visualization and analysis of compound bioactivity space

artículo científico publicado en 2020

Lista de obras de Tunca Doğan

2-D Thresholding of the Connectivity Map Following the Multiple Sequence Alignments of Diverse Datasets

A Structural Perspective on the Modulation of Protein-Protein Interactions with Small Molecules

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

Annotation of biologically relevant ligands in UniProtKB using ChEBI

Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences.

CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations

DEEPScreen: High Performance Drug-Target Interaction Prediction with Convolutional Neural Networks Using 2-D Structural Compound Representations

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Democratising Knowledge Representation with BioCypher

Democratizing knowledge representation with BioCypher

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences

HPO2GO: prediction of human phenotype ontology term associations using cross ontology annotation co-occurrences

Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.

MDeePred: Novel Multi-Channel protein featurization for deep learning based binding affinity prediction in drug discovery

Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites

Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tools and data services registry: a community effort to document bioinformatics resources

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB

iBioProVis: interactive visualization and analysis of compound bioactivity space