Lista de obras - Anne E Carpenter - Dominio Público Uruguay

2020 BioImage Analysis Survey: Community experiences and needs for the future

artículo científico publicado en 2021

A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells

artículo científico publicado en 2016

A call for bioimaging software usability

artículo científico publicado en 2012

A chemical screen probing the relationship between mitochondrial content and cell size

artículo científico publicado en 2012

A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay

artículo científico publicado en 2017

A field guide to cultivating computational biology

artículo científico

A microscale human liver platform that supports the hepatic stages of Plasmodium falciparum and vivax

artículo científico publicado en 2013

A novel small molecule regulator of guanine nucleotide exchange activity of the ADP-ribosylation factor and golgi membrane trafficking.

artículo científico publicado en 2008

Abnormalities in mitochondrial structure in cells from patients with bipolar disorder

artículo científico publicado en 2010

Alteration of large-scale chromatin structure by estrogen receptor

artículo científico publicado en 2002

An image analysis toolbox for high-throughput C. elegans assays

artículo científico publicado en 2012

An intermittent live cell imaging screen for siRNA enhancers and suppressors of a kinesin-5 inhibitor

artículo científico publicado en 2009

An open-source computational tool to automatically quantify immunolabeled retinal ganglion cells

artículo científico publicado en 2016

An open-source solution for advanced imaging flow cytometry data analysis using machine learning

artículo científico publicado en 2016

Automated image-based assay for evaluation of HIV neutralization and cell-to-cell fusion inhibition

artículo científico publicado en 2014

Biological imaging software tools

artículo científico publicado en 2012

CDy6, a photostable probe for long-term real-time visualization of mitosis and proliferating cells

artículo científico publicado en 2015

CP-CHARM: segmentation-free image classification made accessible

artículo científico publicado en 2016

Capturing single-cell heterogeneity via data fusion improves image-based profiling

artículo científico publicado en 2019

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

artículo científico publicado en 2008

CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data

artículo científico publicado en 2015

CellProfiler: free, versatile software for automated biological image analysis

artículo científico publicado en 2007

Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment

artículo científico publicado en 2013

Data-analysis strategies for image-based cell profiling.

artículo científico

Deductive automated pollen classification in environmental samples via exploratory deep learning and imaging flow cytometry

artículo científico publicado en 2023

Deepometry, a framework for applying supervised and weakly supervised deep learning to imaging cytometry

scientific article published on 18 June 2021

Diagnostic Potential of Imaging Flow Cytometry.

artículo científico publicado en 2018

Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening

artículo científico publicado en 2016

EXTRACTING BIOMEDICALLY IMPORTANT INFORMATION FROM LARGE, AUTOMATED IMAGING EXPERIMENTS.

artículo científico publicado en 2011

Erratum: Visualization of image data from cells to organisms

scholarly article by Thomas Walter et al published June 2010 in Nature Methods

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

scholarly article published 31 May 2018

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

scientific article published on 16 July 2019

Extracting rich information from images

artículo científico publicado en 2009

Genes in human obesity loci are causal obesity genes in C. elegans

artículo científico publicado en 2021

Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1-S6K pathway signaling

artículo científico publicado en 2011

Harnessing the power of microscopy images to accelerate drug discovery: what are the possibilities?

artículo científico publicado en 2020

High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons

artículo científico publicado en 2014

High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.

artículo científico publicado en 2014

High-throughput screen for novel antimicrobials using a whole animal infection model

artículo científico publicado en 2009

High-throughput screens for fluorescent dye discovery

artículo científico publicado en 2008

Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice

artículo científico publicado en 2011

Identification and local delivery of vasodilators for the reduction of ureteral contractions

scientific article published on 02 December 2019

Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth

artículo científico publicado en 2014

Image-based chemical screening

artículo científico publicado en 2007

Image-based profiling for drug discovery: due for a machine-learning upgrade?

artículo científico publicado en 2020

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

artículo científico publicado en 2011

Increasing the Content of High-Content Screening: An Overview

artículo científico publicado en 2014

Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening

artículo científico publicado en 2009

Keras R-CNN: library for cell detection in biological images using deep neural networks

artículo científico publicado en 2020

Label-Free Leukemia Monitoring by Computer Vision

artículo científico publicado en 2020

Label-free cell cycle analysis for high-throughput imaging flow cytometry.

artículo científico publicado en 2016

Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration

artículo científico publicado en 2017

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects

artículo científico publicado en 2015

Multiplex cytological profiling assay to measure diverse cellular states

artículo científico publicado en 2013

Nanoparticle vesicle encoding for imaging and tracking cell populations ⬇️

artículo científico publicado en 2014

Niche-based screening identifies small-molecule inhibitors of leukemia stem cells

artículo científico publicado en 2013

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

scientific article published on 21 October 2019

Objective assessment of stored blood quality by deep learning

artículo científico publicado en 2020

Opportunities and obstacles for deep learning in biology and medicine.

artículo científico publicado en 2018

Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model

artículo científico publicado en 2015

Pipeline for illumination correction of images for high-throughput microscopy

artículo científico publicado en 2014

Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic

artículo científico publicado en 2022

ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments

artículo científico publicado en 2014

Publisher Correction: Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

artículo científico publicado en 2020

PyImageJ: A library for integrating ImageJ and Python

artículo científico publicado en 2022

Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler.

artículo científico publicado en 2018

Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification

artículo científico publicado en 2015

RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS

artículo científico publicado en 2010

Reconstructing cell cycle and disease progression using deep learning

artículo científico publicado en 2017

Scientific Community Image Forum: A discussion forum for scientific image software

artículo científico publicado en 2019

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

artículo científico publicado en 2009

Screening cellular feature measurements for image-based assay development

artículo científico publicado en 2010

Small molecules discovered in a pathway screen target the Rho pathway in cytokinesis

artículo científico publicado en 2010

Software opens the door to quantitative imaging

scientific article published on 01 February 2007

Systematic morphological profiling of human gene and allele function via Cell Painting.

scientific article published on 18 March 2017

Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence

artículo científico publicado en 2017

Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling

artículo científico publicado en 2014

Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution

artículo científico publicado en 2009

Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images

artículo científico publicado en 2015

Using CellProfiler for automatic identification and measurement of biological objects in images

artículo científico publicado en 2008

Weakly supervised learning of single-cell feature embeddings

Workflow and metrics for image quality control in large-scale high-content screens

artículo científico publicado en 2011

ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state

scientific journal article

mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway

artículo científico publicado en 2011

Lista de obras de Anne E Carpenter

2020 BioImage Analysis Survey: Community experiences and needs for the future

A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells

A call for bioimaging software usability

A chemical screen probing the relationship between mitochondrial content and cell size

A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay

A field guide to cultivating computational biology

A microscale human liver platform that supports the hepatic stages of Plasmodium falciparum and vivax

A novel small molecule regulator of guanine nucleotide exchange activity of the ADP-ribosylation factor and golgi membrane trafficking.

Abnormalities in mitochondrial structure in cells from patients with bipolar disorder

Alteration of large-scale chromatin structure by estrogen receptor

An image analysis toolbox for high-throughput C. elegans assays

An intermittent live cell imaging screen for siRNA enhancers and suppressors of a kinesin-5 inhibitor

An open-source computational tool to automatically quantify immunolabeled retinal ganglion cells

An open-source solution for advanced imaging flow cytometry data analysis using machine learning

Automated image-based assay for evaluation of HIV neutralization and cell-to-cell fusion inhibition

Biological imaging software tools

CDy6, a photostable probe for long-term real-time visualization of mitosis and proliferating cells

CP-CHARM: segmentation-free image classification made accessible

Capturing single-cell heterogeneity via data fusion improves image-based profiling

Capturing single-cell heterogeneity via data fusion improves image-based profiling

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data

CellProfiler: free, versatile software for automated biological image analysis

Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment

Data-analysis strategies for image-based cell profiling.

Deductive automated pollen classification in environmental samples via exploratory deep learning and imaging flow cytometry

Deepometry, a framework for applying supervised and weakly supervised deep learning to imaging cytometry

Diagnostic Potential of Imaging Flow Cytometry.

Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening

EXTRACTING BIOMEDICALLY IMPORTANT INFORMATION FROM LARGE, AUTOMATED IMAGING EXPERIMENTS.

Erratum: Visualization of image data from cells to organisms

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Extracting rich information from images

Genes in human obesity loci are causal obesity genes in C. elegans

Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1-S6K pathway signaling

Harnessing the power of microscopy images to accelerate drug discovery: what are the possibilities?

High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons

High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.

High-throughput screen for novel antimicrobials using a whole animal infection model

High-throughput screens for fluorescent dye discovery

Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice

Identification and local delivery of vasodilators for the reduction of ureteral contractions

Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth

Image-based chemical screening

Image-based profiling for drug discovery: due for a machine-learning upgrade?

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

Increasing the Content of High-Content Screening: An Overview

Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening

Keras R-CNN: library for cell detection in biological images using deep neural networks

Label-Free Leukemia Monitoring by Computer Vision

Label-free cell cycle analysis for high-throughput imaging flow cytometry.

Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects

Multiplex cytological profiling assay to measure diverse cellular states

Nanoparticle vesicle encoding for imaging and tracking cell populations ⬇️

Niche-based screening identifies small-molecule inhibitors of leukemia stem cells

Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

Objective assessment of stored blood quality by deep learning

Opportunities and obstacles for deep learning in biology and medicine.

Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model

Pipeline for illumination correction of images for high-throughput microscopy

Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic

ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments

Publisher Correction: Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl

PyImageJ: A library for integrating ImageJ and Python

Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler.

Quantifying co-cultured cell phenotypes in high-throughput using pixel-based classification

RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS

Reconstructing cell cycle and disease progression using deep learning

Scientific Community Image Forum: A discussion forum for scientific image software

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

Screening cellular feature measurements for image-based assay development

Small molecules discovered in a pathway screen target the Rho pathway in cytokinesis

Software opens the door to quantitative imaging

Systematic morphological profiling of human gene and allele function via Cell Painting.

Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence

Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling

Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution