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Lista de obras de Ben C Collins

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

artículo científico publicado en 2014

AP-SWATH reveals direct involvement of VCP/p97 in integrated stress response signaling through facilitating CReP/PPP1R15B degradation

artículo científico publicado en 2018

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

artículo científico publicado en 2015

Absolute quantification of toxicological biomarkers by multiple reaction monitoring.

artículo científico publicado en 2011

Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH

artículo científico publicado en 2016

Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation

artículo científico publicado en 2015

Building high-quality assay libraries for targeted analysis of SWATH MS data

artículo científico publicado en 2015

Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.

artículo científico publicado en 2019

Complex-centric proteome profiling by SEC-SWATH-MS

Complex-centric proteome profiling by SEC-SWATH-MS

Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes

artículo científico publicado en 2020

Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial

scholarly article by Christina Ludwig et al published 13 August 2018 in Molecular Systems Biology

Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival

artículo científico publicado en 2017

Development of a pharmaceutical hepatotoxicity biomarker panel using a discovery to targeted proteomics approach.

artículo científico publicado en 2012

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

artículo científico publicado en 2021

Differential proteomics incorporating iTRAQ labeling and multi-dimensional separations.

artículo científico publicado en 2011

Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring.

artículo científico publicado en 2017

Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

artículo científico publicado en 2014

Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry

artículo científico publicado en 2015

In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells

artículo científico publicado en 2017

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.

artículo científico publicado en 2017

Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis

artículo científico

Mass spectrometric protein maps for biomarker discovery and clinical research

scientific article published on 21 October 2013

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

artículo científico publicado en 2017

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

artículo científico publicado en 2021

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

artículo científico publicado en 2014

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry.

scientific article published on March 2017

Proteomics goes parallel

artículo científico publicado en 2018

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

artículo científico publicado en 2013

Quantitative proteomics: challenges and opportunities in basic and applied research

artículo científico

Quantitative variability of 342 plasma proteins in a human twin population

artículo científico publicado en 2015

Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

artículo científico publicado en 2012

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

artículo científico publicado en 2015

Sequence tagging reveals unexpected modifications in toxicoproteomics

artículo científico publicado en 2011

Serum proteomic profiling reveals that pretreatment complement protein levels are predictive of esophageal cancer patient response to neoadjuvant chemoradiation.

artículo científico publicado en 2011

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

artículo científico publicado en 2017

Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis

artículo científico publicado en 2017

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

scientific article published on August 2016

Use of SELDI MS to discover and identify potential biomarkers of toxicity in InnoMed PredTox: a multi-site, multi-compound study

artículo científico publicado en 2010

Use of proteomics for the discovery of early markers of drug toxicity.

artículo científico publicado en 2007

diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

artículo científico publicado en 2020

mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry

artículo científico publicado en 2015

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