Lista de obras - Ivaylo Ivanov - Dominio Público Uruguay

A new structural framework for integrating replication protein A into DNA processing machinery.

artículo científico publicado en 2013

Ab initio calculations of intramolecular parameters for a class of arylamide polymers

artículo científico publicado en 2006

Alkylpurine glycosylase D employs DNA sculpting as a strategy to extrude and excise damaged bases

artículo científico publicado en 2014

Characterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations.

artículo científico publicado en 2009

Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes

artículo científico publicado en 2013

Diamidine compounds for selective inhibition of protein arginine methyltransferase 1.

artículo científico publicado en 2014

Discovery of Decamidine as a New and Potent PRMT1 Inhibitor

artículo científico publicado en 2017

Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space.

artículo científico publicado en 2015

Dynamical flexibility and proton transfer in the arginase active site probed by ab initio molecular dynamics

scientific article published on 01 March 2005

Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair

scientific article published on 17 September 2020

Enzyme cofactors: double-edged sword for catalysis

scientific article published on 01 January 2013

First-principles study of aqueous hydroxide solutions.

artículo científico publicado en 2002

Functional dynamics in replication protein A DNA binding and protein recruitment domains

artículo científico publicado en 2015

Histone H4 Acetylation Differentially Modulates Arginine Methylation by an in Cis Mechanism ⬇️

artículo científico publicado el 18 de abril de 2011

Hydrogen bonding in water

scientific article published on 20 November 2003

Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution

artículo científico publicado en 2015

Natural Product Micheliolide (MCL) Irreversibly Activates Pyruvate Kinase M2 and Suppresses Leukemia

artículo científico publicado en 2018

New insights into the GABA(A) receptor structure and orthosteric ligand binding: receptor modeling guided by experimental data. ⬇️

artículo científico publicado en 2011

Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1.

artículo científico publicado en 2013

Polymerization and editing modes of a high-fidelity DNA polymerase are linked by a well-defined path

artículo científico publicado en 2020

Probing DNA clamps with single-molecule force spectroscopy.

artículo científico publicado en 2013

Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications.

artículo científico publicado en 2006

Rational design of a protein that binds integrin αvβ3 outside the ligand binding site

artículo científico publicado en 2016

Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps

scientific article published on 30 April 2019

Recognition of the ring-opened state of proliferating cell nuclear antigen by replication factor C promotes eukaryotic clamp-loading.

artículo científico publicado en 2010

Relative pKa values from first-principles molecular dynamics: the case of histidine deprotonation

artículo científico publicado en 2006

Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability

artículo científico publicado en 2012

Secondary Interaction Interfaces with PCNA Control Conformational Switching of DNA Polymerase PolB from Polymerization to Editing.

artículo científico publicado en 2016

Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy

scientific article published on 31 March 2020

Single-molecule FRET unveils induced-fit mechanism for substrate selectivity in flap endonuclease 1.

artículo científico publicado en 2017

Small molecule binders recognize DNA microstructural variations via an induced fit mechanism

artículo científico publicado en 2019

Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA

artículo científico publicado en 2011

Structural mechanism of ATP-independent transcription initiation by RNA polymerase I

artículo científico publicado en 2017

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6

artículo científico publicado en 2020

Structural visualization of RNA polymerase III transcription machineries

scientific article published on 31 July 2018

Synthetic mimics of antimicrobial peptides.

artículo científico publicado en 2008

Transcription preinitiation complex structure and dynamics provide insight into genetic diseases

scientific article published on 20 May 2019

Transmembrane peptide-induced lipid sorting and mechanism of Lalpha-to-inverted phase transition using coarse-grain molecular dynamics.

artículo científico publicado en 2004

Uncovering universal rules governing the selectivity of the archetypal DNA glycosylase TDG.

artículo científico publicado en 2018

Unexpected Allosteric Network Contributes to LRH-1 Co-regulator Selectivity.

artículo científico publicado en 2015

Lista de obras de Ivaylo Ivanov

A new structural framework for integrating replication protein A into DNA processing machinery.

Ab initio calculations of intramolecular parameters for a class of arylamide polymers

Alkylpurine glycosylase D employs DNA sculpting as a strategy to extrude and excise damaged bases

Characterizing loop dynamics and ligand recognition in human- and avian-type influenza neuraminidases via generalized born molecular dynamics and end-point free energy calculations.

Conserved Structural Chemistry for Incision Activity in Structurally Non-homologous Apurinic/Apyrimidinic Endonuclease APE1 and Endonuclease IV DNA Repair Enzymes

Diamidine compounds for selective inhibition of protein arginine methyltransferase 1.

Discovery of Decamidine as a New and Potent PRMT1 Inhibitor

Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space.

Dynamical flexibility and proton transfer in the arginase active site probed by ab initio molecular dynamics

Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair

Enzyme cofactors: double-edged sword for catalysis

First-principles study of aqueous hydroxide solutions.

Functional dynamics in replication protein A DNA binding and protein recruitment domains

Histone H4 Acetylation Differentially Modulates Arginine Methylation by an in Cis Mechanism ⬇️

Hydrogen bonding in water

Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution

Natural Product Micheliolide (MCL) Irreversibly Activates Pyruvate Kinase M2 and Suppresses Leukemia

New insights into the GABA(A) receptor structure and orthosteric ligand binding: receptor modeling guided by experimental data. ⬇️

Opening pathways of the DNA clamps proliferating cell nuclear antigen and Rad9-Rad1-Hus1.

Polymerization and editing modes of a high-fidelity DNA polymerase are linked by a well-defined path

Probing DNA clamps with single-molecule force spectroscopy.

Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications.

Rational design of a protein that binds integrin αvβ3 outside the ligand binding site

Recognition of a Key Anchor Residue by a Conserved Hydrophobic Pocket Ensures Subunit Interface Integrity in DNA Clamps

Recognition of the ring-opened state of proliferating cell nuclear antigen by replication factor C promotes eukaryotic clamp-loading.

Relative pKa values from first-principles molecular dynamics: the case of histidine deprotonation

Repair complexes of FEN1 endonuclease, DNA, and Rad9-Hus1-Rad1 are distinguished from their PCNA counterparts by functionally important stability

Secondary Interaction Interfaces with PCNA Control Conformational Switching of DNA Polymerase PolB from Polymerization to Editing.

Simulation-Based Methods for Model Building and Refinement in Cryoelectron Microscopy

Single-molecule FRET unveils induced-fit mechanism for substrate selectivity in flap endonuclease 1.

Small molecule binders recognize DNA microstructural variations via an induced fit mechanism

Solution X-ray scattering combined with computational modeling reveals multiple conformations of covalently bound ubiquitin on PCNA

Structural mechanism of ATP-independent transcription initiation by RNA polymerase I

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6

Structural visualization of RNA polymerase III transcription machineries

Synthetic mimics of antimicrobial peptides.

Transcription preinitiation complex structure and dynamics provide insight into genetic diseases

Transmembrane peptide-induced lipid sorting and mechanism of Lalpha-to-inverted phase transition using coarse-grain molecular dynamics.

Uncovering universal rules governing the selectivity of the archetypal DNA glycosylase TDG.

Unexpected Allosteric Network Contributes to LRH-1 Co-regulator Selectivity.