Lista de obras - Jelle J Goeman - Dominio Público Uruguay

A Cochran-Armitage-type and a score-free global test for multivariate ordinal data

artículo científico publicado en 2016

A Goodness-of-Fit Test for Multinomial Logistic Regression

artículo científico publicado en 2006

A Kinome-Wide Small Interfering RNA Screen Identifies Proviral and Antiviral Host Factors in Severe Acute Respiratory Syndrome Coronavirus Replication, Including Double-Stranded RNA-Activated Protein Kinase and Early Secretory Pathway Proteins.

artículo científico publicado en 2015

A decline in PABPN1 induces progressive muscle weakness in oculopharyngeal muscle dystrophy and in muscle aging

artículo científico publicado en 2013

A global test for groups of genes: testing association with a clinical outcome

artículo científico

A global × global test for testing associations between two large sets of variables

artículo científico publicado en 2016

A microarray study on the effect of four hormone therapy regimens on gene transcription in whole blood from healthy postmenopausal women

artículo científico publicado en 2012

A multiple testing method for hypotheses structured in a directed acyclic graph

artículo científico publicado en 2014

A region-based multiple testing method for hypotheses ordered in space or time

artículo científico publicado en 2015

A test for comparing two groups of samples when analyzing multiple omics profiles

artículo científico publicado en 2014

An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs

scientific article published on 04 October 2014

Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

artículo científico publicado en 2016

Analyzing gene expression data in terms of gene sets: methodological issues

artículo científico publicado en 2007

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

artículo científico publicado en 2015

Autocorrelated logistic ridge regression for prediction based on proteomics spectra

artículo científico publicado en 2008

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain

scientific article published on August 2016

Contribution to the discussion of "A critical evaluation of the current 'p-value controversy"'.

artículo científico publicado en 2017

Correction: Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R.

artículo científico publicado en 2012

Corrigendum: DNA methylation signatures link prenatal famine exposure to growth and metabolism

artículo científico publicado en 2015

Cross-sectional serum metabolomic study of multiple forms of muscular dystrophy

artículo científico publicado en 2018

DNA methylation signatures link prenatal famine exposure to growth and metabolism

artículo científico publicado en 2014

Deep characterization of a common D4Z4 variant identifies biallelic DUX4 expression as a modifier for disease penetrance in FSHD2.

artículo científico publicado en 2017

Deep sequencing to reveal new variants in pooled DNA samples

artículo científico publicado en 2009

Different gene sets contribute to different symptom dimensions of depression and anxiety ⬇️

artículo científico publicado el 9 de mayo de 2012

Dlx1 and Rgs5 in the ductus arteriosus: vessel-specific genes identified by transcriptional profiling of laser-capture microdissected endothelial and smooth muscle cells

artículo científico publicado en 2014

Drug Survival Studies in Dermatology:Principles, Purposes, and Pitfalls

artículo científico publicado en 2015

Dynamics of the bacterial gut microbiota during controlled human infection with Necator americanus larvae

scientific article published on 01 November 2020

Efficient approximate k-fold and leave-one-out cross-validation for ridge regression

scientific article published on 24 January 2013

Endogenous HLA class II epitopes that are immunogenic in vivo show distinct behavior toward HLA-DM and its natural inhibitor HLA-DO.

artículo científico publicado en 2012

Enhancing scatterplots with smoothed densities.

artículo científico publicado en 2004

Epigenomic Analysis of Sézary Syndrome Defines Patterns of Aberrant DNA Methylation and Identifies Diagnostic Markers

artículo científico publicado en 2016

Fetal mesenchymal stromal cells differentiating towards chondrocytes acquire a gene expression profile resembling human growth plate cartilage

artículo científico publicado en 2012

Focused human gene expression profiling using dual-color reverse transcriptase multiplex ligation-dependent probe amplification

artículo científico publicado en 2015

Gene set analysis of GWAS data for human longevity highlights the relevance of the insulin/IGF-1 signaling and telomere maintenance pathways

artículo científico publicado en 2011

Gene-expression of metastasized versus non-metastasized primary head and neck squamous cell carcinomas: a pathway-based analysis.

artículo científico publicado en 2008

Genes involved in the osteoarthritis process identified through genome wide expression analysis in articular cartilage; the RAAK study.

artículo científico publicado en 2014

Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes

artículo científico publicado en 2007

Genome-wide microRNA expression analysis of clear cell renal cell carcinoma by next generation deep sequencing

artículo científico publicado en 2012

Hommel's procedure in linear time

artículo científico publicado en 2018

Human leukocyte antigen-DO regulates surface presentation of human leukocyte antigen class II-restricted antigens on B cell malignancies

artículo científico publicado en 2014

Human papillomavirus and post-transplant cutaneous squamous-cell carcinoma: a multicenter, prospective cohort study

artículo científico publicado en 2017

Huntington's disease biomarker progression profile identified by transcriptome sequencing in peripheral blood

artículo científico publicado en 2015

Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array

artículo científico publicado en 2013

Identification of biomarkers for tuberculosis disease using a novel dual-color RT-MLPA assay.

artículo científico publicado en 2011

Impact of congenital cytomegalovirus infection on transcriptomes from archived dried blood spots in relation to long-term clinical outcome

artículo científico publicado en 2018

Inhibition of Gsk3β in cartilage induces osteoarthritic features through activation of the canonical Wnt signaling pathway.

artículo científico publicado en 2011

Inter-individual differences in CpG methylation at D4Z4 correlate with clinical variability in FSHD1 and FSHD2. ⬇️

artículo científico publicado en 2014

KeyGenes, a Tool to Probe Tissue Differentiation Using a Human Fetal Transcriptional Atlas

artículo científico publicado en 2015

L1 penalized estimation in the Cox proportional hazards model

artículo científico publicado en 2010

Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine

scientific article published on 03 April 2019

Literature-aided interpretation of gene expression data with the weighted global test

artículo científico publicado en 2010

Loss of heterozygosity and copy number alterations in flow-sorted bulky cervical cancer

artículo científico publicado en 2013

MAGE-A3 immunotherapeutic as adjuvant therapy for patients with resected, MAGE-A3-positive, stage III melanoma (DERMA): a double-blind, randomised, placebo-controlled, phase 3 trial

scientific article published on 13 June 2018

Major aging-associated RNA expressions change at two distinct age-positions.

artículo científico publicado en 2014

Meta-analysis on blood transcriptomic studies identifies consistently coexpressed protein-protein interaction modules as robust markers of human aging

artículo científico publicado en 2013

MicroRNA classifier and nomogram for metastasis prediction in colon cancer.

artículo científico publicado en 2014

Multiple Testing of Gene Sets from Gene Ontology: Possibilities and Pitfalls

artículo científico

Multiple testing on the directed acyclic graph of gene ontology.

artículo científico

Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data

artículo científico publicado en 2013

Plea for routinely presenting prediction intervals in meta-analysis

artículo científico publicado en 2016

Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation

artículo científico publicado en 2012

Prenatal exposure to apoE deficiency and postnatal hypercholesterolemia are associated with altered cell-specific lysine methyltransferase and histone methylation patterns in the vasculature

artículo científico publicado en 2009

Promoter CpG island hypermethylation in dysplastic nevus and melanoma: CLDN11 as an epigenetic biomarker for malignancy

artículo científico publicado en 2014

Quantitative comparison of different iron forms in the temporal cortex of Alzheimer patients and control subjects

artículo científico publicado en 2018

Resolving confusion of tongues in statistics and machine learning: a primer for biologists and bioinformaticians.

artículo científico

Robin Hood: A cost-efficient two-stage approach to large-scale simultaneous inference with non-homogeneous sparse effects

artículo científico publicado en 2017

Similar gene expression profiles of sporadic, PGL2-, and SDHD-linked paragangliomas suggest a common pathway to tumorigenesis

artículo científico publicado en 2009

Small studies are more heterogeneous than large ones: a meta-meta-analysis

artículo científico

Sotos syndrome is associated with deregulation of the MAPK/ERK-signaling pathway.

artículo científico publicado en 2012

Testing association of a pathway with survival using gene expression data

artículo científico publicado en 2005

Testing goodness of fit in regression: a general approach for specified alternatives

artículo científico publicado en 2012

The footprint of genome architecture in the largest genome expansion in RNA viruses

artículo científico publicado en 2013

The inheritance procedure: multiple testing of tree-structured hypotheses

artículo científico publicado en 2012

The transcriptional response to chronic stress and glucocorticoid receptor blockade in the hippocampal dentate gyrus

artículo científico publicado en 2010

Three-sided hypothesis testing: simultaneous testing of superiority, equivalence and inferiority

artículo científico publicado en 2010

Tracking the progression of the human inner cell mass during embryonic stem cell derivation

artículo científico publicado en 2012

Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.

artículo científico publicado en 2018

Transcriptional profiling of human familial longevity indicates a role for ASF1A and IL7R

artículo científico publicado en 2012

Unraveling genetic predisposition to familial or early onset gastric cancer using germline whole-exome sequencing

artículo científico publicado en 2017

Variability in the analysis of a single neuroimaging dataset by many teams

artículo científico publicado en 2020

Lista de obras de Jelle J Goeman

A Cochran-Armitage-type and a score-free global test for multivariate ordinal data

A Goodness-of-Fit Test for Multinomial Logistic Regression

A Kinome-Wide Small Interfering RNA Screen Identifies Proviral and Antiviral Host Factors in Severe Acute Respiratory Syndrome Coronavirus Replication, Including Double-Stranded RNA-Activated Protein Kinase and Early Secretory Pathway Proteins.

A decline in PABPN1 induces progressive muscle weakness in oculopharyngeal muscle dystrophy and in muscle aging

A global test for groups of genes: testing association with a clinical outcome

A global × global test for testing associations between two large sets of variables

A microarray study on the effect of four hormone therapy regimens on gene transcription in whole blood from healthy postmenopausal women

A multiple testing method for hypotheses structured in a directed acyclic graph

A region-based multiple testing method for hypotheses ordered in space or time

A test for comparing two groups of samples when analyzing multiple omics profiles

An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs

Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

Analyzing gene expression data in terms of gene sets: methodological issues

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

Autocorrelated logistic ridge regression for prediction based on proteomics spectra

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain

Contribution to the discussion of "A critical evaluation of the current 'p-value controversy"'.

Correction: Transcriptional Profiling of Human Familial Longevity Indicates a Role for ASF1A and IL7R.

Corrigendum: DNA methylation signatures link prenatal famine exposure to growth and metabolism

Cross-sectional serum metabolomic study of multiple forms of muscular dystrophy

DNA methylation signatures link prenatal famine exposure to growth and metabolism

Deep characterization of a common D4Z4 variant identifies biallelic DUX4 expression as a modifier for disease penetrance in FSHD2.

Deep sequencing to reveal new variants in pooled DNA samples

Different gene sets contribute to different symptom dimensions of depression and anxiety ⬇️

Dlx1 and Rgs5 in the ductus arteriosus: vessel-specific genes identified by transcriptional profiling of laser-capture microdissected endothelial and smooth muscle cells

Drug Survival Studies in Dermatology:Principles, Purposes, and Pitfalls

Dynamics of the bacterial gut microbiota during controlled human infection with Necator americanus larvae

Efficient approximate k-fold and leave-one-out cross-validation for ridge regression

Endogenous HLA class II epitopes that are immunogenic in vivo show distinct behavior toward HLA-DM and its natural inhibitor HLA-DO.

Enhancing scatterplots with smoothed densities.

Epigenomic Analysis of Sézary Syndrome Defines Patterns of Aberrant DNA Methylation and Identifies Diagnostic Markers

Fetal mesenchymal stromal cells differentiating towards chondrocytes acquire a gene expression profile resembling human growth plate cartilage

Focused human gene expression profiling using dual-color reverse transcriptase multiplex ligation-dependent probe amplification

Gene set analysis of GWAS data for human longevity highlights the relevance of the insulin/IGF-1 signaling and telomere maintenance pathways

Gene-expression of metastasized versus non-metastasized primary head and neck squamous cell carcinomas: a pathway-based analysis.

Genes involved in the osteoarthritis process identified through genome wide expression analysis in articular cartilage; the RAAK study.

Genetic susceptibility to respiratory syncytial virus bronchiolitis is predominantly associated with innate immune genes

Genome-wide microRNA expression analysis of clear cell renal cell carcinoma by next generation deep sequencing

Hommel's procedure in linear time

Human leukocyte antigen-DO regulates surface presentation of human leukocyte antigen class II-restricted antigens on B cell malignancies

Human papillomavirus and post-transplant cutaneous squamous-cell carcinoma: a multicenter, prospective cohort study

Huntington's disease biomarker progression profile identified by transcriptome sequencing in peripheral blood

Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array

Identification of biomarkers for tuberculosis disease using a novel dual-color RT-MLPA assay.

Impact of congenital cytomegalovirus infection on transcriptomes from archived dried blood spots in relation to long-term clinical outcome

Inhibition of Gsk3β in cartilage induces osteoarthritic features through activation of the canonical Wnt signaling pathway.

Inter-individual differences in CpG methylation at D4Z4 correlate with clinical variability in FSHD1 and FSHD2. ⬇️

KeyGenes, a Tool to Probe Tissue Differentiation Using a Human Fetal Transcriptional Atlas

L1 penalized estimation in the Cox proportional hazards model

Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine

Literature-aided interpretation of gene expression data with the weighted global test

Loss of heterozygosity and copy number alterations in flow-sorted bulky cervical cancer

MAGE-A3 immunotherapeutic as adjuvant therapy for patients with resected, MAGE-A3-positive, stage III melanoma (DERMA): a double-blind, randomised, placebo-controlled, phase 3 trial

Major aging-associated RNA expressions change at two distinct age-positions.

Meta-analysis on blood transcriptomic studies identifies consistently coexpressed protein-protein interaction modules as robust markers of human aging

MicroRNA classifier and nomogram for metastasis prediction in colon cancer.

Multiple Testing of Gene Sets from Gene Ontology: Possibilities and Pitfalls

Multiple testing on the directed acyclic graph of gene ontology.

Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data

Plea for routinely presenting prediction intervals in meta-analysis

Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation

Prenatal exposure to apoE deficiency and postnatal hypercholesterolemia are associated with altered cell-specific lysine methyltransferase and histone methylation patterns in the vasculature

Promoter CpG island hypermethylation in dysplastic nevus and melanoma: CLDN11 as an epigenetic biomarker for malignancy

Quantitative comparison of different iron forms in the temporal cortex of Alzheimer patients and control subjects

Resolving confusion of tongues in statistics and machine learning: a primer for biologists and bioinformaticians.

Robin Hood: A cost-efficient two-stage approach to large-scale simultaneous inference with non-homogeneous sparse effects

Similar gene expression profiles of sporadic, PGL2-, and SDHD-linked paragangliomas suggest a common pathway to tumorigenesis

Small studies are more heterogeneous than large ones: a meta-meta-analysis

Sotos syndrome is associated with deregulation of the MAPK/ERK-signaling pathway.

Testing association of a pathway with survival using gene expression data

Testing goodness of fit in regression: a general approach for specified alternatives

The footprint of genome architecture in the largest genome expansion in RNA viruses

The inheritance procedure: multiple testing of tree-structured hypotheses

The transcriptional response to chronic stress and glucocorticoid receptor blockade in the hippocampal dentate gyrus

Three-sided hypothesis testing: simultaneous testing of superiority, equivalence and inferiority

Tracking the progression of the human inner cell mass during embryonic stem cell derivation

Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.

Transcriptional profiling of human familial longevity indicates a role for ASF1A and IL7R

Unraveling genetic predisposition to familial or early onset gastric cancer using germline whole-exome sequencing