Lista de obras - Barend Mons - Dominio Público Uruguay

A Generic Workflow for the Data FAIRification Process

article published in 2019

A putative role for genome-wide epigenetic regulatory mechanisms in Huntington’s disease: A computational assessment

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

article by Mark D Wilkinson et al published 19 March 2019 in Scientific Data

Ambiguity of human gene symbols in LocusLink and MEDLINE: creating an inventory and a disambiguation test collection.

artículo científico publicado en 2003

An Online Ontology: WiktionaryZ

An Open, FAIRified Data Commons: Proposal for NIH Data Commons Pilot

artículo científico publicado en 2017

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic

artículo científico publicado en 2022

Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE

artículo científico publicado en 2007

BIOMEDICINE: Partnership Between South and North Crystallizes Around Malaria

artículo científico publicado en 1998

Bioinformatics in the Netherlands: the value of a nationwide community

artículo científico publicado en 2018

Bioinformatics in the Netherlands: the value of a nationwide community.

artículo científico publicado en 2017

Bridging the translational innovation gap through good biomarker practice

artículo científico publicado en 2017

Bromo-deoxyuridine is not incorporated into DNA of malaria parasites

artículo científico publicado en 1991

Calling on a million minds for community annotation in WikiProteins

artículo científico publicado en 2008

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud

artículo científico publicado en 2017

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes

artículo científico publicado en 2005

Collaboration and the Semantic Web

Collaborative Computational Technologies for Biomedical Research

Comments to Jean-Claude Burgelman's article Politics and Open Science: How the European Open Science Cloud Became Reality (the Untold Story) —“EOSC is a bigger ME” and the Dunning Kruger effect

artículo científico publicado en 2021

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain

scientific article published on August 2016

Constructing an associative concept space for literature-based discovery

Contextual annotation of web pages for interactive browsing

artículo científico publicado en 2004

Converting neXtProt into Linked Data and nanopublications

artículo científico publicado en 2015

Data Stewardship for Open Science

artículo científico publicado en 2018

Data stewardship for open science : implementing fair principles

Databases for knowledge discovery. Examples from biomedicine and health care

artículo científico publicado en 2005

Detection of different developmental stages of malaria parasites by non-radioactive DNA in situ hybridization

artículo científico publicado en 1991

Distribution of information in biomedical abstracts and full-text publications.

artículo científico publicado en 2004

Erythrocytic schizogony and invasion of Plasmodium vivax in vitro

article by Barend Mons et al published April 1988 in International Journal for Parasitology

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification

artículo científico publicado en 2006

Explain your data by Concept Profile Analysis Web Services

article published in 2014

FAIR Principles: Interpretations and Implementation Considerations

scholarly article

FAIR Science for Social Machines: Let's Share Metadata Knowlets in the Internet of FAIR Data and Services

article published in 2019

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites ⬇️

Generation of chromosome size polymorphism during in vivo mitotic multiplication of Plasmodium berghei involves both loss and addition of subtelomeric repeat sequences.

artículo científico publicado en 1990

Generic information can retrieve known biological associations: implications for biomedical knowledge discovery.

artículo científico publicado en 2013

Getting ready for the Human Phenome Project: the 2012 forum of the Human Variome Project

artículo científico publicado en 2013

Host cell specificity and schizogony of Plasmodium berghei under different in vitro conditions

artículo científico publicado en 1989

Improving data and knowledge management to better integrate health care and research.

artículo científico publicado en 2013

In silico discovery and experimental validation of new protein-protein interactions

artículo científico publicado en 2011

In silico knowledge and content tracking

artículo científico publicado en 2011

In vitro culture of Plasmodium berghei using a new suspension system

article

Induction of sexual differentiation in malaria

artículo científico publicado en 1985

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

artículo científico publicado en 2014

Integrative knowledge management to enhance pharmaceutical R&D

artículo científico publicado en 2014

Invest 5% of research funds in ensuring data are reusable

artículo científico publicado en 2020

Laboratory models for research in vivo and in vitro on malaria parasites of mammals: Current status

artículo científico publicado en 1990

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

artículo científico publicado en 2008

Localization of circumsporozoite protein in the sporogonic stages of Plasmodium vivax.

artículo científico publicado en 1992

Long-term in vitro cultures of Plasmodium berghei and preliminary observations on gametocytogenesis

article

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain

artículo científico publicado en 2012

Mining microarray datasets aided by knowledge stored in literature

artículo científico publicado en 2003

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study

artículo científico publicado en 2015

Novel protein-protein interactions inferred from literature context

artículo científico publicado en 2009

Nucleotide sequence variation in the beta-tubulin genes from Plasmodium berghei and Plasmodium falciparum

artículo científico publicado en 1991

Online tools to support literature-based discovery in the life sciences

artículo científico publicado en 2005

Open PHACTS: semantic interoperability for drug discovery ⬇️

artículo científico publicado en 2012

Plasmodium berghei: gametocyte production, DNA content, and chromosome-size polymorphisms during asexual multiplication in vivo

artículo científico publicado en 1989

Plasmodium berghei: in vivo generation and selection of karyotype mutants and non-gametocyte producer mutants

artículo científico publicado en 1992

Plasmodium berghei: the antimalarial action of artemisinin and sodium artelinate in vivo and in vitro, studied by flow cytometry

artículo científico publicado en 1990

Plasmodium falciparum: studies on mature exoerythrocytic forms in the liver of the chimpanzee, Pan troglodytes

artículo científico publicado en 1990

Plasmodium species: flow cytometry and microfluorometry assessments of DNA content and synthesis.

artículo científico publicado en 1987

Plasmodium vivax: in vitro growth and reinvasion in red blood cells of Aotus nancymai

artículo científico publicado en 1988

Playing catch-up in building an open research commons

artículo científico publicado en 2022

Presence of contaminating mitochondrial DNA from host reticulocytes in experimental infections of Plasmodium berghei

artículo científico publicado en 1989

Querying NeXtProt Nanopublications and Their Value for Insights on Sequence Variants and Tissue Expression

artículo científico publicado en 2018

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

artículo científico publicado en 2014

Repository of mutations from Oman: The entry point to a national mutation database

artículo científico publicado en 2015

Research for research: tools for knowledge discovery and visualization.

artículo científico publicado en 2002

Solving bottlenecks in data sharing in the life sciences

artículo científico publicado en 2012

Speeding up research with the Semantic Web

artículo científico publicado en 2012

Supporting nanopublication provenance

Text mining for biology - the way forward: opinions from leading scientists

artículo científico publicado en 2008

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

artículo científico publicado en 2007

The Comparative Anatomy of Nanopublications and FAIR Digital Objects

artículo científico publicado en 2022

The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands

artículo científico publicado en 2016

The ELIXIR channel in F1000Research

artículo científico publicado en 2015

The FAIR Guiding Principles for scientific data management and stewardship

artículo científico publicado en 2016

The FAIR Principles: First Generation Implementation Choices and Challenges

The Implicitome: A Resource for Rationalizing Gene-Disease Associations

artículo científico publicado en 2016

The VODAN IN: support of a FAIR-based infrastructure for COVID-19

scientific article published on 06 May 2020

The case for open science: rare diseases

artículo científico publicado en 2020

The complete development in vitro of the vertebrate phase of the mammalian malarial parasite Plasmodium berghei

artículo científico publicado en 1987

The complete sequence of a Plasmodium malariae SSUrRNA gene and its comparison to other plasmodial SSUrRNA genes

artículo científico publicado en 1991

The use of Foundational Ontologies in Bioinformatics ⬇️

The value of data

artículo científico publicado en 2011

Theoretical and technological building blocks for an innovation accelerator

article

Thesaurus-based disambiguation of gene symbols

artículo científico publicado en 2005

Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications ⬇️

article

Towards the Tipping Point for FAIR Implementation

article published in 2019

Using contextual queries.

artículo científico publicado en 2003

Which gene did you mean?

artículo científico publicado en 2005

Word sense disambiguation in the biomedical domain: an overview

artículo científico publicado en 2005

Lista de obras de Barend Mons

A Generic Workflow for the Data FAIRification Process

A putative role for genome-wide epigenetic regulatory mechanisms in Huntington’s disease: A computational assessment

Addendum: The FAIR Guiding Principles for scientific data management and stewardship

Ambiguity of human gene symbols in LocusLink and MEDLINE: creating an inventory and a disambiguation test collection.

An Online Ontology: WiktionaryZ

An Open, FAIRified Data Commons: Proposal for NIH Data Commons Pilot

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic

Assignment of protein function and discovery of novel nucleolar proteins based on automatic analysis of MEDLINE

BIOMEDICINE: Partnership Between South and North Crystallizes Around Malaria

Bioinformatics in the Netherlands: the value of a nationwide community

Bioinformatics in the Netherlands: the value of a nationwide community.

Bridging the translational innovation gap through good biomarker practice

Bromo-deoxyuridine is not incorporated into DNA of malaria parasites

Calling on a million minds for community annotation in WikiProteins

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes

Collaboration and the Semantic Web

Collaborative Computational Technologies for Biomedical Research

Comments to Jean-Claude Burgelman's article Politics and Open Science: How the European Open Science Cloud Became Reality (the Untold Story) —“EOSC is a bigger ME” and the Dunning Kruger effect

Common disease signatures from gene expression analysis in Huntington's disease human blood and brain

Constructing an associative concept space for literature-based discovery

Contextual annotation of web pages for interactive browsing

Converting neXtProt into Linked Data and nanopublications

Data Stewardship for Open Science

Data stewardship for open science : implementing fair principles

Databases for knowledge discovery. Examples from biomedicine and health care

Detection of different developmental stages of malaria parasites by non-radioactive DNA in situ hybridization

Distribution of information in biomedical abstracts and full-text publications.

Erythrocytic schizogony and invasion of Plasmodium vivax in vitro

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification

Explain your data by Concept Profile Analysis Web Services

FAIR Principles: Interpretations and Implementation Considerations

FAIR Science for Social Machines: Let's Share Metadata Knowlets in the Internet of FAIR Data and Services

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites ⬇️

Generation of chromosome size polymorphism during in vivo mitotic multiplication of Plasmodium berghei involves both loss and addition of subtelomeric repeat sequences.

Generic information can retrieve known biological associations: implications for biomedical knowledge discovery.

Getting ready for the Human Phenome Project: the 2012 forum of the Human Variome Project

Host cell specificity and schizogony of Plasmodium berghei under different in vitro conditions

Improving data and knowledge management to better integrate health care and research.

In silico discovery and experimental validation of new protein-protein interactions

In silico knowledge and content tracking

In vitro culture of Plasmodium berghei using a new suspension system

Induction of sexual differentiation in malaria

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information

Integrative knowledge management to enhance pharmaceutical R&D

Invest 5% of research funds in ensuring data are reusable

Laboratory models for research in vivo and in vitro on malaria parasites of mammals: Current status

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

Localization of circumsporozoite protein in the sporogonic stages of Plasmodium vivax.

Long-term in vitro cultures of Plasmodium berghei and preliminary observations on gametocytogenesis

Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain

Mining microarray datasets aided by knowledge stored in literature

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study

Novel protein-protein interactions inferred from literature context

Nucleotide sequence variation in the beta-tubulin genes from Plasmodium berghei and Plasmodium falciparum

Online tools to support literature-based discovery in the life sciences

Open PHACTS: semantic interoperability for drug discovery ⬇️

Plasmodium berghei: gametocyte production, DNA content, and chromosome-size polymorphisms during asexual multiplication in vivo

Plasmodium berghei: in vivo generation and selection of karyotype mutants and non-gametocyte producer mutants

Plasmodium berghei: the antimalarial action of artemisinin and sodium artelinate in vivo and in vitro, studied by flow cytometry

Plasmodium falciparum: studies on mature exoerythrocytic forms in the liver of the chimpanzee, Pan troglodytes

Plasmodium species: flow cytometry and microfluorometry assessments of DNA content and synthesis.

Plasmodium vivax: in vitro growth and reinvasion in red blood cells of Aotus nancymai

Playing catch-up in building an open research commons

Presence of contaminating mitochondrial DNA from host reticulocytes in experimental infections of Plasmodium berghei

Querying NeXtProt Nanopublications and Their Value for Insights on Sequence Variants and Tissue Expression

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

Repository of mutations from Oman: The entry point to a national mutation database

Research for research: tools for knowledge discovery and visualization.

Solving bottlenecks in data sharing in the life sciences

Speeding up research with the Semantic Web

Supporting nanopublication provenance

Text mining for biology - the way forward: opinions from leading scientists

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

The Comparative Anatomy of Nanopublications and FAIR Digital Objects

The Dutch Techcentre for Life Sciences: Enabling data-intensive life science research in the Netherlands

The ELIXIR channel in F1000Research