Lista de obras - Ard Louis - Dominio Público Uruguay

A nucleotide-level coarse-grained model of RNA ⬇️

artículo científico publicado en 2014

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure.

artículo científico publicado en 2014

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.

artículo científico publicado en 2016

Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model.

artículo científico publicado en 2017

Characterizing the bending and flexibility induced by bulges in DNA duplexes. ⬇️

artículo científico publicado en 2015

Coarse-grained modelling of supercoiled RNA. ⬇️

artículo científico publicado en 2015

Coarse-grained simulations of DNA overstretching.

artículo científico publicado en 2013

Coarse-graining DNA for simulations of DNA nanotechnology.

artículo científico publicado en 2013

Colloid-polymer mixtures in the protein limit

scientific article published on 14 February 2003

Contingency, convergence and hyper-astronomical numbers in biological evolution

artículo científico publicado en 2016

Crystallization and phase separation in nonadditive binary hard-sphere mixtures

artículo científico publicado en 2000

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism

artículo científico publicado en 2012

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization. ⬇️

artículo científico publicado en 2015

DNA nanotweezers studied with a coarse-grained model of DNA.

artículo científico publicado en 2010

Density profiles and solvation forces for a Yukawa fluid in a slit pore.

artículo científico publicado en 2008

Density-functional study of interfacial properties of colloid-polymer mixtures

scientific article published on 01 April 2005

Direct Simulation of the Self-Assembly of a Small DNA Origami.

artículo científico publicado en 2016

Dynamic colloidal stabilization by nanoparticle halos.

artículo científico publicado en 2004

Dynamics of solutes with hydrodynamic interactions: comparison between Brownian dynamics and stochastic rotation dynamics simulations.

artículo científico publicado en 2013

Effect of Bending Rigidity on the Knotting of a Polymer under Tension.

artículo científico publicado en 2012

Effective forces in colloidal mixtures: from depletion attraction to accumulation repulsion

artículo científico publicado en 2002

Effects of interparticle attractions on colloidal sedimentation

artículo científico publicado en 2010

Epistasis can lead to fragmented neutral spaces and contingency in evolution.

artículo científico publicado en 2011

Evolutionary dynamics in a simple model of self-assembly.

artículo científico publicado en 2011

Extracting bulk properties of self-assembling systems from small simulations ⬇️

artículo científico publicado el 23 de febrero de 2010

Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors. ⬇️

artículo científico publicado en 2015

Formation of dodecagonal quasicrystals in two-dimensional systems of patchy particles

artículo científico publicado en 2012

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability ⬇️

artículo científico publicado en 2016

How Péclet number affects microstructure and transient cluster aggregation in sedimenting colloidal suspensions

artículo científico publicado en 2012

Hydrodynamic and Brownian Fluctuations in Sedimenting Suspensions

artículo científico publicado en 2004

Hydrodynamics of confined colloidal fluids in two dimensions.

artículo científico publicado en 2009

Influence of polymer-excluded volume on the phase-behavior of colloid-polymer mixtures

scientific article published on 03 September 2002

Influence of solvent quality on effective pair potentials between polymers in solution

scientific article published on 25 April 2003

Influence of solvent quality on polymer solutions: a Monte Carlo study of bulk and interfacial properties.

artículo científico publicado en 2004

Inhibition of protein crystallization by evolutionary negative design

artículo científico publicado en 2004

Interplay between hydrodynamic and Brownian fluctuations in sedimenting colloidal suspensions

scientific article published on 22 January 2008

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA. ⬇️

artículo científico publicado en 2015

Knot-controlled ejection of a polymer from a virus capsid.

artículo científico publicado en 2009

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation ⬇️

artículo científico publicado en 2016

Measuring colloidal interactions with confocal microscopy.

artículo científico publicado en 2007

Modelling the self-assembly of virus capsids.

artículo científico publicado en 2010

Modelling toehold-mediated RNA strand displacement. ⬇️

artículo científico publicado en 2015

Monodisperse self-assembly in a model with protein-like interactions

artículo científico publicado en 2009

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly.

artículo científico publicado en 2018

Nonmonotonic variation with salt concentration of the second virial coefficient in protein solutions

scientific article published on 16 May 2003

On the biophysics and kinetics of toehold-mediated DNA strand displacement

artículo científico publicado en 2013

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.

artículo científico publicado en 2013

Phase diagram of model anisotropic particles with octahedral symmetry

artículo científico publicado en 2007

Phase separation of a model binary polymer solution in an external field

artículo científico publicado en 2006

Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA. ⬇️

artículo científico publicado en 2015

Re-entrant phase behavior for systems with competition between phase separation and self-assembly

article

Representability problems for coarse-grained water potentials.

artículo científico publicado en 2007

Reversible self-assembly of patchy particles into monodisperse icosahedral clusters

artículo científico publicado en 2007

Self-assembly and evolution of homomeric protein complexes.

artículo científico publicado en 2009

Self-assembly of monodisperse clusters: Dependence on target geometry

artículo científico publicado en 2009

Self-assembly, modularity, and physical complexity

artículo científico publicado en 2010

Sequence-dependent thermodynamics of a coarse-grained DNA model ⬇️

artículo científico publicado el 7 de octubre de 2012

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model ⬇️

artículo científico publicado el 28 de febrero de 2011

The arrival of the frequent: how bias in genotype-phenotype maps can steer populations to local optima ⬇️

artículo científico publicado en 2014

The crossover from single file to Fickian diffusion.

artículo científico publicado en 2010

The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks

scientific article published on 07 August 2010

The effect of topology on the structure and free energy landscape of DNA kissing complexes.

artículo científico publicado en 2012

The role of loop stacking in the dynamics of DNA hairpin formation. ⬇️

artículo científico publicado en 2014

The self-assembly of DNA Holliday junctions studied with a minimal model

artículo científico publicado en 2009

The stability of a crystal with diamond structure for patchy particles with tetrahedral symmetry.

artículo científico publicado en 2010

The structure of the genotype-phenotype map strongly constrains the evolution of non-coding RNA.

artículo científico publicado en 2015

Theory of asymmetric nonadditive binary hard-sphere mixtures

artículo científico publicado en 2001

Zigzag transitions and nonequilibrium pattern formation in colloidal chains.

artículo científico publicado en 2013

Lista de obras de Ard Louis

A nucleotide-level coarse-grained model of RNA ⬇️

A tractable genotype-phenotype map modelling the self-assembly of protein quaternary structure.

Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.

Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model.

Characterizing the bending and flexibility induced by bulges in DNA duplexes. ⬇️

Coarse-grained modelling of supercoiled RNA. ⬇️

Coarse-grained simulations of DNA overstretching.

Coarse-graining DNA for simulations of DNA nanotechnology.

Colloid-polymer mixtures in the protein limit

Contingency, convergence and hyper-astronomical numbers in biological evolution

Crystallization and phase separation in nonadditive binary hard-sphere mixtures

DNA cruciform arms nucleate through a correlated but asynchronous cooperative mechanism

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization. ⬇️

DNA nanotweezers studied with a coarse-grained model of DNA.

Density profiles and solvation forces for a Yukawa fluid in a slit pore.

Density-functional study of interfacial properties of colloid-polymer mixtures

Direct Simulation of the Self-Assembly of a Small DNA Origami.

Dynamic colloidal stabilization by nanoparticle halos.

Dynamics of solutes with hydrodynamic interactions: comparison between Brownian dynamics and stochastic rotation dynamics simulations.

Effect of Bending Rigidity on the Knotting of a Polymer under Tension.

Effective forces in colloidal mixtures: from depletion attraction to accumulation repulsion

Effects of interparticle attractions on colloidal sedimentation

Epistasis can lead to fragmented neutral spaces and contingency in evolution.

Evolutionary dynamics in a simple model of self-assembly.

Extracting bulk properties of self-assembling systems from small simulations ⬇️

Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors. ⬇️

Formation of dodecagonal quasicrystals in two-dimensional systems of patchy particles

Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability ⬇️

How Péclet number affects microstructure and transient cluster aggregation in sedimenting colloidal suspensions

Hydrodynamic and Brownian Fluctuations in Sedimenting Suspensions

Hydrodynamics of confined colloidal fluids in two dimensions.

Influence of polymer-excluded volume on the phase-behavior of colloid-polymer mixtures

Influence of solvent quality on effective pair potentials between polymers in solution

Influence of solvent quality on polymer solutions: a Monte Carlo study of bulk and interfacial properties.

Inhibition of protein crystallization by evolutionary negative design

Interplay between hydrodynamic and Brownian fluctuations in sedimenting colloidal suspensions

Introducing improved structural properties and salt dependence into a coarse-grained model of DNA. ⬇️

Knot-controlled ejection of a polymer from a virus capsid.

Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation ⬇️

Measuring colloidal interactions with confocal microscopy.

Modelling the self-assembly of virus capsids.

Modelling toehold-mediated RNA strand displacement. ⬇️

Monodisperse self-assembly in a model with protein-like interactions

Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly.

Nonmonotonic variation with salt concentration of the second virial coefficient in protein solutions

On the biophysics and kinetics of toehold-mediated DNA strand displacement

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.

Phase diagram of model anisotropic particles with octahedral symmetry

Phase separation of a model binary polymer solution in an external field

Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA. ⬇️

Re-entrant phase behavior for systems with competition between phase separation and self-assembly

Representability problems for coarse-grained water potentials.

Reversible self-assembly of patchy particles into monodisperse icosahedral clusters

Self-assembly and evolution of homomeric protein complexes.

Self-assembly of monodisperse clusters: Dependence on target geometry

Self-assembly, modularity, and physical complexity

Sequence-dependent thermodynamics of a coarse-grained DNA model ⬇️

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model ⬇️

The arrival of the frequent: how bias in genotype-phenotype maps can steer populations to local optima ⬇️

The crossover from single file to Fickian diffusion.

The effect of scale-free topology on the robustness and evolvability of genetic regulatory networks

The effect of topology on the structure and free energy landscape of DNA kissing complexes.

The role of loop stacking in the dynamics of DNA hairpin formation. ⬇️

The self-assembly of DNA Holliday junctions studied with a minimal model

The stability of a crystal with diamond structure for patchy particles with tetrahedral symmetry.

The structure of the genotype-phenotype map strongly constrains the evolution of non-coding RNA.

Theory of asymmetric nonadditive binary hard-sphere mixtures

Zigzag transitions and nonequilibrium pattern formation in colloidal chains.