Lista de obras - Anthony Mathelier - Dominio Público Uruguay

A map of direct TF-DNA interactions in the human genome

article by Marius Gheorghe et al published 28 February 2019 in Nucleic Acids Research

A map of direct TF-DNA interactions in the human genome

A promoter-level mammalian expression atlas

artículo científico publicado en 2014

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

article

An integrated expression atlas of miRNAs and their promoters in human and mouse.

artículo científico publicado en 2017

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

artículo científico publicado en 2016

Chromosomal periodicity and positional networks of genes in Escherichia coli

artículo científico publicado en 2010

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.

artículo científico publicado en 2015

DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo

artículo científico publicado en 2016

DNA copy number motifs are strong and independent predictors of survival in breast cancer

artículo científico publicado en 2020

DNA methylation at enhancers identifies distinct breast cancer lineages

artículo científico publicado en 2017

DNA methylation profiling in human Huntington's disease brain.

artículo científico publicado en 2016

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

artículo científico publicado en 2015

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.

artículo científico publicado en 2016

Environmental and Physiological Insights from Microbial Genome Sequences

Evaluating the impact of single nucleotide variants on transcription factor binding.

artículo científico publicado en 2016

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response

artículo científico publicado en 2018

Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response

article

Identification of altered cis-regulatory elements in human disease

artículo científico publicado en 2015

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis

scientific article published on 18 September 2019

Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment

artículo científico publicado en 2014

Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

artículo científico publicado en 2017

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

artículo científico publicado en 2013

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

artículo científico publicado en 2016

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

scholarly article by Aziz Khan et al published 4 January 2018 in Nucleic Acids Research

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

artículo científico publicado en 2021

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

artículo científico publicado en 2023

JASPAR RESTful API: accessing JASPAR data from any programming language

artículo científico publicado en 2017

Large scale chromosomal mapping of human microRNA structural clusters ⬇️

artículo científico publicado el 26 de febrero de 2013

MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations

artículo científico publicado en 2018

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

artículo científico publicado en 2010

MirGeneDB 2.0: the metazoan microRNA complement

artículo científico publicado en 2020

MirGeneDB2.0: the curated microRNA Gene Database

article

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina.

artículo científico publicado en 2016

Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers

artículo científico publicado en 2022

Put science first and formatting later

artículo científico publicado en 2018

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

artículo científico publicado en 2017

Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers

artículo científico publicado en 2018

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

artículo científico publicado en 2013

The next generation of transcription factor binding site prediction

artículo científico publicado en 2013

The potential of microRNAs in personalized medicine against cancers ⬇️

artículo científico publicado en 2014

Twenty-Seven Tamoxifen-Inducible iCre-Driver Mouse Strains for Eye and Brain, Including Seventeen Carrying a New Inducible-First Constitutive-Ready Allele

article

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

artículo científico publicado en 2016

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

artículo científico publicado en 2016

Lista de obras de Anthony Mathelier

A map of direct TF-DNA interactions in the human genome

A map of direct TF-DNA interactions in the human genome

A promoter-level mammalian expression atlas

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

An integrated expression atlas of miRNAs and their promoters in human and mouse.

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

Chromosomal periodicity and positional networks of genes in Escherichia coli

Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas.

DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo

DNA copy number motifs are strong and independent predictors of survival in breast cancer

DNA methylation at enhancers identifies distinct breast cancer lineages

DNA methylation profiling in human Huntington's disease brain.

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.

Environmental and Physiological Insights from Microbial Genome Sequences

Evaluating the impact of single nucleotide variants on transcription factor binding.

Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response

Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response

Identification of altered cis-regulatory elements in human disease

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis

Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichment

Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

JASPAR RESTful API: accessing JASPAR data from any programming language

Large scale chromosomal mapping of human microRNA structural clusters ⬇️

MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

MirGeneDB 2.0: the metazoan microRNA complement

MirGeneDB2.0: the curated microRNA Gene Database

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina.

Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers

Put science first and formatting later

ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments

Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

The next generation of transcription factor binding site prediction

The potential of microRNAs in personalized medicine against cancers ⬇️

Twenty-Seven Tamoxifen-Inducible iCre-Driver Mouse Strains for Eye and Brain, Including Seventeen Carrying a New Inducible-First Constitutive-Ready Allele

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses