Lista de obras - Karsten Hokamp - Dominio Público Uruguay

A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.

artículo científico publicado en 2018

A common microRNA signature in mouse models of retinal degeneration

artículo científico publicado en 2008

A dual-strategy expression screen for candidate connectivity labels in the developing thalamus

artículo científico publicado en 2017

A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni

artículo científico publicado en 2014

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

artículo científico publicado en 2003

A transcription factor network coordinates attraction, repulsion, and adhesion combinatorially to control motor axon pathway selection

artículo científico publicado en 2014

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

artículo científico publicado en 2019

Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa

artículo científico publicado en 2007

An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium

artículo científico publicado en 2013

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

artículo científico publicado en 2015

Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation

scientific article published on 07 April 2022

ArrayPipe: a flexible processing pipeline for microarray data

artículo científico publicado en 2004

BOSC 2019, the 20th annual Bioinformatics Open Source Conference

artículo científico publicado en 2019

BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference

artículo científico publicado en 2021

BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference

artículo científico publicado en 2022

Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide.

artículo científico publicado en 2006

CD10-/ALDH- cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy.

artículo científico publicado en 2017

CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages

artículo científico publicado en 2021

Cell envelope gene expression in phosphate-limited Bacillus subtilis cells.

artículo científico publicado en 2011

Characterization of protein C receptor expression in monocytes

artículo científico publicado en 2001

Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1.

artículo científico publicado en 2015

Comparative transcript profiling of Candida albicans and Candida dubliniensis identifies SFL2, a C. albicans gene required for virulence in a reconstituted epithelial infection model

artículo científico publicado en 2009

Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.

artículo científico publicado en 2009

Complete Genome Sequence of Salmonella enterica Serovar Agona Pulsed-Field Type SAGOXB.0066, Cause of a 2008 Pan-European Outbreak

artículo científico publicado en 2014

Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.

artículo científico publicado en 2015

Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast

artículo científico publicado en 2017

Dysregulated mitogen-activated protein kinase signalling as an oncogenic basis for clear cell sarcoma of the kidney.

artículo científico publicado en 2017

Effect of stress on viral-bacterial synergy in bovine respiratory disease: novel mechanisms to regulate inflammation

artículo científico publicado en 2005

Extensive genomic duplication during early chordate evolution

artículo científico publicado en 2002

Fam60a defines a variant Sin3a-Hdac complex in embryonic stem cells required for self-renewal.

artículo científico publicado en 2017

G-protein-coupled receptor independent, immunomodulatory properties of chemokine CXCL9.

artículo científico publicado en 2009

Gene expression changes during retinal development and rod specification

artículo científico

Genome-wide analysis of phosphorylated PhoP binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis

artículo científico publicado en 2015

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

artículo científico publicado en 2010

Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes

artículo científico publicado en 2011

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis

artículo científico publicado en 2012

Initial sequencing and analysis of the human genome

artículo científico publicado en 2001

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

artículo científico publicado en 2008

Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica

artículo científico publicado en 2021

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

artículo científico publicado en 2014

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium

artículo científico publicado en 2012

Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells

artículo científico publicado en 2008

Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37.

artículo científico publicado en 2006

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis

artículo científico publicado en 2012

Perl One-Liners: Bridging the Gap Between Large Data Sets and Analysis Tools

artículo científico publicado en 2015

ProbeLynx: a tool for updating the association of microarray probes to genes

artículo científico publicado en 2004

Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations

artículo científico publicado en 2012

PubCrawler: keeping up comfortably with PubMed and GenBank

artículo científico publicado en 2004

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

artículo científico publicado en 2015

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

artículo científico publicado en 2014

Re-engineering cellular physiology by rewiring high-level global regulatory genes.

artículo científico publicado en 2015

Receptor-mediated recognition of mycobacterial pathogens

artículo científico

Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella.

artículo científico publicado en 2018

Streptococcus pneumoniae early response genes to human lung epithelial cells

artículo científico publicado en 2008

Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits.

artículo científico publicado en 2014

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

artículo científico publicado en 2016

The 2016 Bioinformatics Open Source Conference (BOSC)

artículo científico publicado en 2016

The 2017 Bioinformatics Open Source Conference (BOSC).

artículo científico publicado en 2017

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)

artículo científico publicado en 2018

The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)

scientific article published on 21 September 2020

The 2R hypothesis and the human genome sequence

artículo científico publicado en 2003

The Candida albicans TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation

artículo científico publicado en 2017

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium.

artículo científico publicado en 2016

The WalRK (YycFG) and σ(I) RsgI regulators cooperate to control CwlO and LytE expression in exponentially growing and stressed Bacillus subtilis cells

artículo científico publicado en 2012

The complex relationship of gene duplication and essentiality

artículo científico publicado en 2009

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns.

artículo científico publicado en 2009

The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

artículo científico publicado en 2007

The growth phase-dependent regulation of the pilus locus genes by two-component system TCS08 in Streptococcus pneumoniae

artículo científico publicado en 2008

The impact of common genetic variants in the mitochondrial glycine cleavage system on relevant metabolites.

artículo científico publicado en 2018

The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

artículo científico publicado en 2012

Transcriptome studies on Streptococcus pneumoniae, illustration of early response genes to THP-1 human macrophages

artículo científico publicado en 2008

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

artículo científico publicado en 2013

Wrapping up BLAST and other applications for use on Unix clusters

artículo científico publicado en 2003

microRNA regulatory circuits in a mouse model of inherited retinal degeneration

artículo científico publicado en 2016

Lista de obras de Karsten Hokamp

A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.

A common microRNA signature in mouse models of retinal degeneration

A dual-strategy expression screen for candidate connectivity labels in the developing thalamus

A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

A transcription factor network coordinates attraction, repulsion, and adhesion combinatorially to control motor axon pathway selection

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa

An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation

ArrayPipe: a flexible processing pipeline for microarray data

BOSC 2019, the 20th annual Bioinformatics Open Source Conference

BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference

BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference

Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide.

CD10-/ALDH- cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy.

CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages

Cell envelope gene expression in phosphate-limited Bacillus subtilis cells.

Characterization of protein C receptor expression in monocytes

Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1.

Comparative transcript profiling of Candida albicans and Candida dubliniensis identifies SFL2, a C. albicans gene required for virulence in a reconstituted epithelial infection model

Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.

Complete Genome Sequence of Salmonella enterica Serovar Agona Pulsed-Field Type SAGOXB.0066, Cause of a 2008 Pan-European Outbreak

Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.

Distinct histone methylation and transcription profiles are established during the development of cellular quiescence in yeast

Dysregulated mitogen-activated protein kinase signalling as an oncogenic basis for clear cell sarcoma of the kidney.

Effect of stress on viral-bacterial synergy in bovine respiratory disease: novel mechanisms to regulate inflammation

Extensive genomic duplication during early chordate evolution

Fam60a defines a variant Sin3a-Hdac complex in embryonic stem cells required for self-renewal.

G-protein-coupled receptor independent, immunomodulatory properties of chemokine CXCL9.

Gene expression changes during retinal development and rod specification

Genome-wide analysis of phosphorylated PhoP binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis

Initial sequencing and analysis of the human genome

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Intracellular niche-specific profiling reveals transcriptional adaptations required for the cytosolic lifestyle of Salmonella enterica

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium

Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells

Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37.

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis

Perl One-Liners: Bridging the Gap Between Large Data Sets and Analysis Tools

ProbeLynx: a tool for updating the association of microarray probes to genes

Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations

PubCrawler: keeping up comfortably with PubMed and GenBank

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

Re-engineering cellular physiology by rewiring high-level global regulatory genes.

Receptor-mediated recognition of mycobacterial pathogens

Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella.

Streptococcus pneumoniae early response genes to human lung epithelial cells

Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits.

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

The 2016 Bioinformatics Open Source Conference (BOSC)

The 2017 Bioinformatics Open Source Conference (BOSC).

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)

The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)

The 2R hypothesis and the human genome sequence

The Candida albicans TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation

The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium.

The WalRK (YycFG) and σ(I) RsgI regulators cooperate to control CwlO and LytE expression in exponentially growing and stressed Bacillus subtilis cells

The complex relationship of gene duplication and essentiality

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns.

The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

The growth phase-dependent regulation of the pilus locus genes by two-component system TCS08 in Streptococcus pneumoniae

The impact of common genetic variants in the mitochondrial glycine cleavage system on relevant metabolites.

The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

Transcriptome studies on Streptococcus pneumoniae, illustration of early response genes to THP-1 human macrophages

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

Wrapping up BLAST and other applications for use on Unix clusters

microRNA regulatory circuits in a mouse model of inherited retinal degeneration