Lista de obras - Eugénio C. Ferreira - Dominio Público Uruguay

10th International Chemical and Biological Engineering Conference – CHEMPOR 2008 – Integrating Life Sciences & Engineering Special Section

@Note: a workbench for biomedical text mining

artículo científico

A Comparative Proteome Analysis of Escherichia coli ΔrelA Mutant Cells.

artículo científico publicado en 2016

A Comparison between bright field and phase-contrast image analysis techniques in activated sludge morphological characterization.

artículo científico publicado en 2010

A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems

A Dynamical Model for the Fermentative Production of Fructooligosaccharides

A Software Tool for the Simulation and Optimization of Dynamic Metabolic Models

A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems

scholarly article by Sónia Carneiro et al published 2011 in Advances in Intelligent and Soft Computing

Activated sludge characterization through microscopy: a review on quantitative image analysis and chemometric techniques.

artículo científico

Activated sludge process monitoring through in situ near-infrared spectral analysis.

artículo científico publicado en 2008

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing.

artículo científico publicado en 2017

Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli

scholarly article by Sónia Carneiro et al published 2010 in Advances in Intelligent and Soft Computing

Assessment of physiological conditions in E. coli fermentations by epifluorescent microscopy and image analysis.

artículo científico publicado en 2009

Automated image analysis to improve bead ingestion toxicity test counts in the protozoan Tetrahymena pyriformis.

artículo científico publicado en 2003

Automatic identification of activated sludge disturbances and assessment of operational parameters.

artículo científico publicado en 2013

BioDR: Semantic indexing networks for biomedical document retrieval

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

COVID-19, Chikungunya, Dengue and Zika Diseases: An Analytical Platform Based on MALDI-TOF MS, IR Spectroscopy and RT-qPCR for Accurate Diagnosis and Accelerate Epidemics Control

artículo científico publicado en 2021

Challenges in integrating Escherichia coli molecular biology data

artículo científico publicado en 2010

Characterization of activated sludge abnormalities by image analysis and chemometric techniques

scientific article published on 12 June 2011

Correction: Population Dynamics of a Salmonella Lytic Phage and Its Host: Implications of the Host Bacterial Growth Rate in Modelling

artículo científico publicado en 2015

Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling.

artículo científico publicado en 2011

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis

Determination of diffusion coefficients of glycerol and glucose from starch based thermoplastic compounds on simulated physiological solution.

artículo científico publicado en 2005

Development of a method using image analysis for the measurement of cellulose-binding domains adsorbed onto cellulose fibers.

artículo científico publicado en 2007

Development of an image analysis procedure for identifying protozoa and metazoa typical of activated sludge system.

artículo científico publicado en 2007

Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: I. Application to a granulation process.

artículo científico publicado en 2004

Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: II. Application to a granule deterioration process triggered by contact with oleic acid.

artículo científico publicado en 2004

Differential Evolution for the Offline and Online Optimization of Fed-Batch Fermentation Processes

Dilution and magnification effects on image analysis applications in activated sludge characterization

scientific article published on 31 August 2010

Discrimination of clinically relevant Candida species by Fourier-transform infrared spectroscopy with attenuated total reflectance (FTIR-ATR)

scholarly article in RSC Advances, vol. 6 no. 94, 2016

Economic analysis and environmental impact assessment of three different fermentation processes for fructooligosaccharides production.

artículo científico publicado en 2015

Effect of hyperbaric stress on yeast morphology: study by automated image analysis

article

Erratum to: Quantitative physiology and elemental composition of Kluyveromyces lactis CBS 2359 during growth on glucose at different specific growth rates

artículo científico publicado en 2017

Estimation of multiple biomass growth rates and biomass concentration in a class of bioprocesses

artículo científico publicado en 2003

Evaluating the integration of proteomic data for the prediction of intracellular fluxes after knockout experiments

Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective

article

Exploiting intrinsic fluorescence spectroscopy to discriminate between Acinetobacter calcoaceticus–Acinetobacter baumannii complex species

article

Exploring the gap between dynamic and constraint-based models of metabolism.

artículo científico publicado en 2012

FT-NIR spectroscopy analysis for monitoring the microbial production of 2-phenylethanol using crude glycerol as carbon source

artículo científico publicado en 2022

Galacto-oligosaccharides production during lactose hydrolysis by free Aspergillus oryzae β-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol

article

Genome scale metabolic network reconstruction of the pathogen Enterococcus faecalis

Genome-Wide Semi-Automated Annotation of Transporter Systems

artículo científico publicado en 2016

Genome-wide metabolic (re-) annotation of Kluyveromyces lactis

artículo científico publicado en 2012

Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis

artículo científico publicado en 2014

Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations

artículo científico publicado en 2010

Identification of metabolic engineering targets through analysis of optimal and sub-optimal routes

artículo científico publicado en 2013

Identification of minimal metabolic pathway models consistent with phenotypic data

article

Identifying different types of bulking in an activated sludge system through quantitative image analysis.

artículo científico publicado en 2011

Image analysis application for the study of activated sludge floc size during the treatment of synthetic and real fishery wastewaters.

artículo científico publicado en 2011

Image analysis technique as a tool to identify morphological changes in Trametes versicolor pellets according to exopolysaccharide or laccase production.

artículo científico publicado en 2013

Influence of the RelA Activity on E. coli Metabolism by Metabolite Profiling of Glucose-Limited Chemostat Cultures.

scientific article published on 12 October 2012

Interpreting the Regulatory Interplay in E. coli Metabolic Pathways

scholarly article by Anália Lourenço et al published 2011 in Advances in Intelligent and Soft Computing

Kinetic and stoichiometric characterization of a fixed biofilm reactor by pulse respirometry

artículo científico publicado en 2011

Kinetic and stoichiometric parameters estimation in a nitrifying bubble column through "in-situ" pulse respirometry.

artículo científico publicado en 2008

Knowledge-based fuzzy system for diagnosis and control of an integrated biological wastewater treatment process.

artículo científico publicado en 2006

Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli

scholarly article by Rafael S. Costa et al published 2009 in Lecture Notes in Computer Science

Life cycle assessment of bacterial cellulose production

artículo científico publicado en 2021

Mapping Salmonella typhimurium pathways using 13C metabolic flux analysis

artículo científico publicado en 2018

Merlin: Metabolic Models Reconstruction using Genome-Scale Information*

Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations.

artículo científico publicado en 2010

Metabolic footprinting of Escherichia coli grown in fed-batch fermentation during recombinant protein production

Metabolic responses to recombinant bioprocesses in Escherichia coli

artículo científico

Modeling formalisms in Systems Biology

artículo científico

Modelling of Biotechnological Processes – An Approach Based on Artificial Neural Networks

scholarly article by Eduardo Valente et al published 2009 in Studies in Computational Intelligence

Molecular aspects and comparative genomics of bacteriophage endolysins.

artículo científico publicado en 2013

Monitoring intracellular polyphosphate accumulation in enhanced biological phosphorus removal systems by quantitative image analysis

artículo científico publicado en 2014

Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants.

artículo científico publicado en 2008

Morphological analysis of Yarrowia lipolytica under stress conditions through image processing

artículo científico publicado en 2003

Morphology and physiology of anaerobic granular sludge exposed to an organic solvent

artículo científico publicado en 2009

Natural computation meta-heuristics for the in silico optimization of microbial strains

artículo científico publicado en 2008

Near-infrared spectroscopy for the detection and quantification of bacterial contaminations in pharmaceutical products

artículo científico publicado en 2015

New PLS analysis approach to wine volatile compounds characterization by near infrared spectroscopy (NIR).

artículo científico publicado en 2017

OptFlux: an open-source software platform for in silico metabolic engineering

artículo científico publicado en 2010

Optimization of fed-batch fermentation processes with bio-inspired algorithms

scholarly article by Miguel Rocha et al published April 2014 in Expert Systems with Applications

Polyhydroxyalkanoate granules quantification in mixed microbial cultures using image analysis: Sudan Black B versus Nile Blue A staining.

artículo científico publicado en 2015

Population dynamics of a Salmonella lytic phage and its host: implications of the host bacterial growth rate in modelling

artículo científico publicado en 2014

Principal component analysis and quantitative image analysis to predict effects of toxics in anaerobic granular sludge.

artículo científico publicado en 2008

Quantification of pharmaceutical compounds in wastewater samples by near infrared spectroscopy (NIR)

artículo científico publicado en 2018

Quantification of the CBD-FITC conjugates surface coating on cellulose fibres.

artículo científico publicado en 2008

Quantitative image analysis as a diagnostic tool for monitoring structural changes of anaerobic granular sludge during detergent shock loads.

artículo científico publicado en 2007

Quantitative image analysis as a tool for Yarrowia lipolytica dimorphic growth evaluation in different culture media.

artículo científico publicado en 2015

Quantitative image analysis for the characterization of microbial aggregates in biological wastewater treatment: a review.

artículo científico

Quantitative image analysis of polyhydroxyalkanoates inclusions from microbial mixed cultures under different SBR operation strategies.

artículo científico publicado en 2017

Quantitative monitoring of an activated sludge reactor using on-line UV-visible and near-infrared spectroscopy

artículo científico publicado en 2009

Quantitative physiology and elemental composition of Kluyveromyces lactis CBS 2359 during growth on glucose at different specific growth rates

artículo científico publicado en 2017

Random sampling of elementary flux modes in large-scale metabolic networks

artículo científico publicado en 2012

Reconstructing High-Quality Large-Scale Metabolic Models with merlin

artículo científico publicado en 2018

Reconstructing genome-scale metabolic models with merlin

artículo científico publicado en 2015

Salmonella typhimurium and Escherichia coli dissimilarity: Closely related bacteria with distinct metabolic profiles.

artículo científico publicado en 2015

Selection and Characterization of a Multivalent Salmonella Phage and Its Production in a Nonpathogenic Escherichia coli Strain ⬇️

artículo científico publicado el 3 de septiembre de 2010

Selection of Elementary Modes for Bioprocess Control

Semantic annotation of biological concepts interplaying microbial cellular responses

artículo científico publicado en 2011

Simultaneous partial nitrification and 2-fluorophenol biodegradation with aerobic granular biomass: Reactor performance and microbial communities.

artículo científico publicado en 2017

Stalked protozoa identification by image analysis and multivariable statistical techniques.

artículo científico publicado en 2008

State and specific growth estimation in heterologous protein production by Pichia pastoris

article

Stringent response of Escherichia coli: revisiting the bibliome using literature mining.

artículo científico publicado en 2011

The use of antibiotics to improve phage detection and enumeration by the double-layer agar technique

artículo científico publicado en 2009

Virtual laboratories in (bio)chemical engineering education

iOD907, the first genome-scale metabolic model for the milk yeast Kluyveromyces lactis.

artículo científico publicado en 2014

Lista de obras de Eugénio C. Ferreira

10th International Chemical and Biological Engineering Conference – CHEMPOR 2008 – Integrating Life Sciences & Engineering Special Section

@Note: a workbench for biomedical text mining

A Comparative Proteome Analysis of Escherichia coli ΔrelA Mutant Cells.

A Comparison between bright field and phase-contrast image analysis techniques in activated sludge morphological characterization.

A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems

A Dynamical Model for the Fermentative Production of Fructooligosaccharides

A Software Tool for the Simulation and Optimization of Dynamic Metabolic Models

A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems

Activated sludge characterization through microscopy: a review on quantitative image analysis and chemometric techniques.

Activated sludge process monitoring through in situ near-infrared spectral analysis.

An Overview of the Evolution of Infrared Spectroscopy Applied to Bacterial Typing.

Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli

Assessment of physiological conditions in E. coli fermentations by epifluorescent microscopy and image analysis.

Automated image analysis to improve bead ingestion toxicity test counts in the protozoan Tetrahymena pyriformis.

Automatic identification of activated sludge disturbances and assessment of operational parameters.

BioDR: Semantic indexing networks for biomedical document retrieval

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing

COVID-19, Chikungunya, Dengue and Zika Diseases: An Analytical Platform Based on MALDI-TOF MS, IR Spectroscopy and RT-qPCR for Accurate Diagnosis and Accelerate Epidemics Control

Challenges in integrating Escherichia coli molecular biology data

Characterization of activated sludge abnormalities by image analysis and chemometric techniques

Correction: Population Dynamics of a Salmonella Lytic Phage and Its Host: Implications of the Host Bacterial Growth Rate in Modelling

Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling.

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis

Determination of diffusion coefficients of glycerol and glucose from starch based thermoplastic compounds on simulated physiological solution.

Development of a method using image analysis for the measurement of cellulose-binding domains adsorbed onto cellulose fibers.

Development of an image analysis procedure for identifying protozoa and metazoa typical of activated sludge system.

Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: I. Application to a granulation process.

Development of image analysis techniques as a tool to detect and quantify morphological changes in anaerobic sludge: II. Application to a granule deterioration process triggered by contact with oleic acid.

Differential Evolution for the Offline and Online Optimization of Fed-Batch Fermentation Processes

Dilution and magnification effects on image analysis applications in activated sludge characterization

Discrimination of clinically relevant Candida species by Fourier-transform infrared spectroscopy with attenuated total reflectance (FTIR-ATR)

Economic analysis and environmental impact assessment of three different fermentation processes for fructooligosaccharides production.

Effect of hyperbaric stress on yeast morphology: study by automated image analysis

Erratum to: Quantitative physiology and elemental composition of Kluyveromyces lactis CBS 2359 during growth on glucose at different specific growth rates

Estimation of multiple biomass growth rates and biomass concentration in a class of bioprocesses

Evaluating the integration of proteomic data for the prediction of intracellular fluxes after knockout experiments

Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective

Exploiting intrinsic fluorescence spectroscopy to discriminate between Acinetobacter calcoaceticus–Acinetobacter baumannii complex species

Exploring the gap between dynamic and constraint-based models of metabolism.

FT-NIR spectroscopy analysis for monitoring the microbial production of 2-phenylethanol using crude glycerol as carbon source

Galacto-oligosaccharides production during lactose hydrolysis by free Aspergillus oryzae β-galactosidase and immobilized on magnetic polysiloxane-polyvinyl alcohol

Genome scale metabolic network reconstruction of the pathogen Enterococcus faecalis

Genome-Wide Semi-Automated Annotation of Transporter Systems

Genome-wide metabolic (re-) annotation of Kluyveromyces lactis

Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis

Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations

Identification of metabolic engineering targets through analysis of optimal and sub-optimal routes

Identification of minimal metabolic pathway models consistent with phenotypic data

Identifying different types of bulking in an activated sludge system through quantitative image analysis.

Image analysis application for the study of activated sludge floc size during the treatment of synthetic and real fishery wastewaters.

Image analysis technique as a tool to identify morphological changes in Trametes versicolor pellets according to exopolysaccharide or laccase production.

Influence of the RelA Activity on E. coli Metabolism by Metabolite Profiling of Glucose-Limited Chemostat Cultures.

Interpreting the Regulatory Interplay in E. coli Metabolic Pathways

Kinetic and stoichiometric characterization of a fixed biofilm reactor by pulse respirometry

Kinetic and stoichiometric parameters estimation in a nitrifying bubble column through "in-situ" pulse respirometry.

Knowledge-based fuzzy system for diagnosis and control of an integrated biological wastewater treatment process.

Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli

Life cycle assessment of bacterial cellulose production

Mapping Salmonella typhimurium pathways using 13C metabolic flux analysis

Merlin: Metabolic Models Reconstruction using Genome-Scale Information*

Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations.

Metabolic footprinting of Escherichia coli grown in fed-batch fermentation during recombinant protein production

Metabolic responses to recombinant bioprocesses in Escherichia coli

Modeling formalisms in Systems Biology

Modelling of Biotechnological Processes – An Approach Based on Artificial Neural Networks

Molecular aspects and comparative genomics of bacteriophage endolysins.

Monitoring intracellular polyphosphate accumulation in enhanced biological phosphorus removal systems by quantitative image analysis

Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants.

Morphological analysis of Yarrowia lipolytica under stress conditions through image processing

Morphology and physiology of anaerobic granular sludge exposed to an organic solvent

Natural computation meta-heuristics for the in silico optimization of microbial strains

Near-infrared spectroscopy for the detection and quantification of bacterial contaminations in pharmaceutical products

New PLS analysis approach to wine volatile compounds characterization by near infrared spectroscopy (NIR).

OptFlux: an open-source software platform for in silico metabolic engineering

Optimization of fed-batch fermentation processes with bio-inspired algorithms

Polyhydroxyalkanoate granules quantification in mixed microbial cultures using image analysis: Sudan Black B versus Nile Blue A staining.

Population dynamics of a Salmonella lytic phage and its host: implications of the host bacterial growth rate in modelling

Principal component analysis and quantitative image analysis to predict effects of toxics in anaerobic granular sludge.

Quantification of pharmaceutical compounds in wastewater samples by near infrared spectroscopy (NIR)