Lista de obras - Paula M. Mabee - Dominio Público Uruguay

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

artículo científico publicado en 2012

A <scp>FAIR</scp> and modular image‐based workflow for knowledge discovery in the emerging field of imageomics

artículo científico publicado en 2024

A Logical Model of Homology for Comparative Biology

artículo científico publicado en 2020

A logical model of homology for comparative biology

artículo científico publicado en 2019

A unified anatomy ontology of the vertebrate skeletal system

artículo científico publicado en 2012

AN EMPIRICAL REJECTION OF THE ONTOGENETIC POLARITY CRITERION

article

AN EXPERIMENTAL STUDY OF INTRASPECIFIC VARIATION, DEVELOPMENTAL TIMING, AND HETEROCHRONY IN FISHES

article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

artículo científico publicado en 2013

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

artículo científico publicado en 2018

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

artículo científico publicado en 2014

Answering Research Questions Using Semantic Traits

artículo científico publicado en 2019

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies

artículo científico publicado en 2022

Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.

artículo científico publicado en 2018

Building a Global Ecosystem Research Infrastructure to Address Global Grand Challenges for Macrosystem Ecology

artículo científico publicado en 2022

CARO – The Common Anatomy Reference Ontology

article

CharaParser+EQ: Performance evaluation without gold standard

article by Hong Cui et al published 2015 in Proceedings of the Association for Information Science and Technology

Coding Polymorphic Data: Examples from Allozymes and Ontogeny

artículo científico publicado en 1993

Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish

artículo científico publicado en 2007

Corrigendum: The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

artículo científico publicado en 2020

Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices

artículo científico publicado en 2016

Development of the cranium and paired fins in Betta splendens (Teleostei: Percomorpha): Intraspecific variation and interspecific comparisons

artículo científico publicado en 1996

Development of the cranium and paired fins in the zebrafish Danio rerio (Ostariophysi, Cyprinidae)

artículo científico publicado en 1996

Development of the mandibular, hyoid arch and gill arch skeleton in the Chinese barb Puntius semifasciolatus: comparisons of ossification sequences among Cypriniformes

artículo científico publicado en 2012

Development of the paired fins in the paddlefish, Polyodon spathula

artículo científico publicado en 2004

Development of the pharyngeal arch skeleton in Catostomus commersonii (Teleostei: Cypriniformes).

artículo científico publicado en 2009

Developmental Data and Phylogenetic Systematics: Evolution of the Vertebrate Limb

artículo científico publicado en 2006

Developmental Data and Phylogenetic Systematics: Evolution of the Vertebrate Limb1

scholarly article by Paula M. Mabee published October 2000 in American Zoologist

Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae).

artículo científico publicado en 2003

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks

artículo científico publicado en 2023

Early developmental plasticity and integrative responses in arctic charr (Salvelinus alpinus): effects of water velocity on body size and shape

artículo científico publicado en 2007

Effect of Clearing and Staining on Fish Length

Emerging semantics to link phenotype and environment

artículo científico publicado en 2015

Evolution of Pigment Pattern Development in Centrarchid Fishes

article

Evolution of median fin modules in the axial skeleton of fishes

artículo científico publicado en 2002

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

artículo científico publicado en 2010

Expression of bmp2a and bmp2b in late-stage zebrafish median fin development

artículo científico publicado en 2004

Extending U.S. Biodiversity Collections to Address National Challenges

artículo científico publicado en 2019

Finding our way through phenotypes

artículo científico publicado en 2015

Founding editorial: embryology--an integrated approach

artículo científico publicado en 2001

Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio

artículo científico publicado en 2001

Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio

artículo científico publicado en 2007

Gill-arch musculature of the quillback carpiodes cyprinus (cypriniformes: catostomidae) with a comparison to cyprinids

artículo científico publicado en 2012

Integrating Evolution and Development: The Need for Bioinformatics in Evo-Devo

article

Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities

scientific article published on 07 October 2020

Morphology of the Hatching Glands in Betta splendens (Teleostei: Perciformes)

Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy

artículo científico publicado en 2015

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

artículo científico publicado en 2016

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

artículo científico publicado en 2014

Phenex: ontological annotation of phenotypic diversity

artículo científico publicado en 2010

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

artículo científico publicado en 2016

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

artículo científico publicado en 2009

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

scholarly article published 13 June 2018

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

article

Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species

artículo científico publicado en 2012

Phenotype ontologies: the bridge between genomics and evolution

artículo científico

Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life

scientific article published on 01 April 2020

REASSESSING THE ONTOGENETIC CRITERION: A RESPONSE TO PATTERSON

artículo científico publicado en 1996

Removing Finalism from Developmental Biology

Segmentation and fusion on the midline: basibranchial homologies in cypriniform fishes

artículo científico publicado en 2012

Supraneural and Predorsal Bones in Fishes: Development and Homologies

article

The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

artículo científico publicado en 2019

The New “Just So” Stories

The Open Traits Network: Using Open Science principles to accelerate trait-based science across the Tree of Life ⬇️

artículo científico publicado en 2020

The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach

artículo científico publicado en 2023

The founding charter of the Omic Biodiversity Observation Network (Omic BON)

artículo científico publicado en 2022

The teleost anatomy ontology: anatomical representation for the genomics age

artículo científico publicado en 2010

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

artículo científico publicado en 2013

Thinking about Developmental Evolution

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

artículo científico publicado en 2015

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

artículo científico publicado en 2014

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

artículo científico

What is an anatomy ontology?

artículo científico publicado en 2013

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits

scientific article published in 2023

Lista de obras de Paula M. Mabee

500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton

A <scp>FAIR</scp> and modular image‐based workflow for knowledge discovery in the emerging field of imageomics

A Logical Model of Homology for Comparative Biology

A logical model of homology for comparative biology

A unified anatomy ontology of the vertebrate skeletal system

AN EMPIRICAL REJECTION OF THE ONTOGENETIC POLARITY CRITERION

AN EXPERIMENTAL STUDY OF INTRASPECIFIC VARIATION, DEVELOPMENTAL TIMING, AND HETEROCHRONY IN FISHES

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems

Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex

Answering Research Questions Using Semantic Traits

Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies

Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.

Building a Global Ecosystem Research Infrastructure to Address Global Grand Challenges for Macrosystem Ecology

CARO – The Common Anatomy Reference Ontology

CharaParser+EQ: Performance evaluation without gold standard

Coding Polymorphic Data: Examples from Allozymes and Ontogeny

Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish

Corrigendum: The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices

Development of the cranium and paired fins in Betta splendens (Teleostei: Percomorpha): Intraspecific variation and interspecific comparisons

Development of the cranium and paired fins in the zebrafish Danio rerio (Ostariophysi, Cyprinidae)

Development of the mandibular, hyoid arch and gill arch skeleton in the Chinese barb Puntius semifasciolatus: comparisons of ossification sequences among Cypriniformes

Development of the paired fins in the paddlefish, Polyodon spathula

Development of the pharyngeal arch skeleton in Catostomus commersonii (Teleostei: Cypriniformes).

Developmental Data and Phylogenetic Systematics: Evolution of the Vertebrate Limb

Developmental Data and Phylogenetic Systematics: Evolution of the Vertebrate Limb1

Developmental morphology of the axial skeleton of the zebrafish, Danio rerio (Ostariophysi: Cyprinidae).

Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks

Early developmental plasticity and integrative responses in arctic charr (Salvelinus alpinus): effects of water velocity on body size and shape

Effect of Clearing and Staining on Fish Length

Emerging semantics to link phenotype and environment

Evolution of Pigment Pattern Development in Centrarchid Fishes

Evolution of median fin modules in the axial skeleton of fishes

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature

Expression of bmp2a and bmp2b in late-stage zebrafish median fin development

Extending U.S. Biodiversity Collections to Address National Challenges

Finding our way through phenotypes

Founding editorial: embryology--an integrated approach

Gdf5 is expressed in the developing skeleton of median fins of late-stage zebrafish, Danio rerio

Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio

Gill-arch musculature of the quillback carpiodes cyprinus (cypriniformes: catostomidae) with a comparison to cyprinids

Integrating Evolution and Development: The Need for Bioinformatics in Evo-Devo

Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities

Morphology of the Hatching Glands in Betta splendens (Teleostei: Perciformes)

Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

Phenex: ontological annotation of phenotypic diversity

Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology

Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species

Phenotype ontologies: the bridge between genomics and evolution

Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life

REASSESSING THE ONTOGENETIC CRITERION: A RESPONSE TO PATTERSON

Removing Finalism from Developmental Biology

Segmentation and fusion on the midline: basibranchial homologies in cypriniform fishes

Supraneural and Predorsal Bones in Fishes: Development and Homologies

The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education

The New “Just So” Stories

The Open Traits Network: Using Open Science principles to accelerate trait-based science across the Tree of Life ⬇️

The US National Ecological Observatory Network and the Global Biodiversity Framework: national research infrastructure with a global reach

The founding charter of the Omic Biodiversity Observation Network (Omic BON)

The teleost anatomy ontology: anatomical representation for the genomics age

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Thinking about Developmental Evolution

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution

What is an anatomy ontology?

rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits