Lista de obras - Kathi Zarnack - Dominio Público Uruguay

A combined computational pipeline to detect circular RNAs in human cancer cells under hypoxic stress

scientific article published on 01 October 2019

An autoinhibitory intramolecular interaction proof-reads RNA recognition by the essential splicing factor U2AF2

artículo científico publicado en 2020

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.

artículo científico publicado en 2011

Cellular differentiation state modulates the mRNA export activity of SR proteins.

artículo científico publicado en 2017

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt

artículo científico publicado en 2015

Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis

artículo científico publicado en 2018

Differential Binding of Mitochondrial Transcripts by MRB8170 and MRB4160 Regulates Distinct Editing Fates of Mitochondrial mRNA in Trypanosomes

artículo científico publicado en 2017

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

artículo científico publicado en 2013

Dynamic mRNP Remodeling in Response to Internal and External Stimuli

scientific article published on 11 September 2020

Erratum to: Insights into the design and interpretation of iCLIP experiments.

artículo científico publicado en 2017

Functional RNA Dynamics Are Progressively Governed by RNA Destabilization during the Adaptation to Chronic Hypoxia

artículo científico publicado en 2022

High-Throughput Screens for cis-Acting RNA Sequence Elements That Promote Nuclear Retention

artículo científico publicado en 2018

High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

artículo científico publicado en 2022

In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors

artículo científico publicado en 2018

Insights into the design and interpretation of iCLIP experiments

artículo científico publicado en 2017

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system

artículo científico publicado en 2017

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.

artículo científico publicado en 2015

Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation

scientific article published on 24 January 2020

Membrane-Associated RNA-Binding Proteins Orchestrate Organelle-Coupled Translation

scientific article published on 16 November 2018

Muscleblind-like 2 controls the hypoxia response of cancer cells

artículo científico publicado en 2020

P23 Acts as Functional RBP in the Macrophage Inflammation Response

artículo científico publicado en 2021

Phenotypic Plasticity of Fibroblasts during Mammary Carcinoma Development

artículo científico publicado en 2019

Pheromone-regulated target genes respond differentially to MAPK phosphorylation of transcription factor Prf1

article

Polypyrimidine tract-binding proteins are essential for B cell development

artículo científico publicado en 2020

Protein–RNA interactions: new genomic technologies and perspectives ⬇️

artículo científico publicado el 18 de enero de 2012

Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt

artículo científico publicado en 2015

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.

artículo científico publicado en 2016

SRSF3 and SRSF7 modulate 3'UTR length through suppression or activation of proximal polyadenylation sites and regulation of CFIm levels

artículo científico publicado en 2021

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

artículo científico publicado en 2016

Tandem KH domains of Khd4 recognize AUACCC and are essential for regulation of morphology as well as pathogenicity in Ustilago maydis.

artículo científico publicado en 2009

Tetracycline-regulated gene expression in the pathogen Ustilago maydis

article

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells

artículo científico publicado en 2020

The RNA-binding protein HuR is essential for the B cell antibody response.

artículo científico publicado en 2015

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1

artículo científico publicado en 2011

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation

artículo científico publicado en 2019

The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.

artículo científico publicado en 2009

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

artículo científico publicado en 2018

iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites

artículo científico publicado en 2019

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

artículo científico publicado en 2010

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

artículo científico publicado en 2010

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

artículo científico publicado en 2011

mRNA trafficking in fungi.

artículo científico publicado en 2007

uORF-Tools-Workflow for the determination of translation-regulatory upstream open reading frames

scientific article published on 12 September 2019

Lista de obras de Kathi Zarnack

A combined computational pipeline to detect circular RNAs in human cancer cells under hypoxic stress

An autoinhibitory intramolecular interaction proof-reads RNA recognition by the essential splicing factor U2AF2

Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.

Cellular differentiation state modulates the mRNA export activity of SR proteins.

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt

Decoding a cancer-relevant splicing decision in the RON proto-oncogene using high-throughput mutagenesis

Differential Binding of Mitochondrial Transcripts by MRB8170 and MRB4160 Regulates Distinct Editing Fates of Mitochondrial mRNA in Trypanosomes

Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements

Dynamic mRNP Remodeling in Response to Internal and External Stimuli

Erratum to: Insights into the design and interpretation of iCLIP experiments.

Functional RNA Dynamics Are Progressively Governed by RNA Destabilization during the Adaptation to Chronic Hypoxia

High-Throughput Screens for cis-Acting RNA Sequence Elements That Promote Nuclear Retention

High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance

In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors

Insights into the design and interpretation of iCLIP experiments

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends.

Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation

Membrane-Associated RNA-Binding Proteins Orchestrate Organelle-Coupled Translation

Muscleblind-like 2 controls the hypoxia response of cancer cells

P23 Acts as Functional RBP in the Macrophage Inflammation Response

Phenotypic Plasticity of Fibroblasts during Mammary Carcinoma Development

Pheromone-regulated target genes respond differentially to MAPK phosphorylation of transcription factor Prf1

Polypyrimidine tract-binding proteins are essential for B cell development

Protein–RNA interactions: new genomic technologies and perspectives ⬇️

Recognition of distinct RNA motifs by the clustered CCCH zinc fingers of neuronal protein Unkempt

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.

SRSF3 and SRSF7 modulate 3'UTR length through suppression or activation of proximal polyadenylation sites and regulation of CFIm levels

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

Tandem KH domains of Khd4 recognize AUACCC and are essential for regulation of morphology as well as pathogenicity in Ustilago maydis.

Tetracycline-regulated gene expression in the pathogen Ustilago maydis

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells

The RNA-binding protein HuR is essential for the B cell antibody response.

The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1

The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation

The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.

The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs

iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites

iCLIP predicts the dual splicing effects of TIA-RNA interactions.

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

mRNA trafficking in fungi.

uORF-Tools-Workflow for the determination of translation-regulatory upstream open reading frames