Lista de obras - Martin Däumer - Dominio Público Uruguay

A novel internally controlled real-time reverse transcription-PCR assay for HIV-1 RNA targeting the pol integrase genomic region

artículo científico publicado en 2007

Analysis of immune selection as a potential cause for the presence of cleavage site mutation 431V in treatment-naive HIV type-1 isolates ⬇️

artículo científico publicado el 1 de enero de 2010

Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients.

artículo científico publicado en 2006

Computational methods for the design of effective therapies against drug resistant HIV strains

artículo científico publicado en 2005

Correlation between genotypic (V3 population sequencing) and phenotypic (Trofile ES) methods of characterizing co-receptor usage of HIV-1 from 200 treatment-naïve HIV patients screened for Study A4001078.

artículo científico publicado en 2012

Deep sequencing reveals mutagenic effects of ribavirin during monotherapy of hepatitis C virus genotype 1-infected patients

artículo científico publicado en 2013

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

artículo científico publicado en 2010

Estimating HIV evolutionary pathways and the genetic barrier to drug resistance

artículo científico publicado en 2005

Evolution of protease inhibitor resistance in the gag and pol genes of HIV subtype G isolates

artículo científico publicado en 2010

Evolution of raltegravir resistance during therapy.

artículo científico publicado en 2009

Failure of Dolutegravir First-Line ART with Selection of Virus Carrying R263K and G118R

scientific article published on 01 August 2019

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

artículo científico publicado en 2014

Functional domains of the human immunodeficiency virus type 1 Nef protein are conserved among different clades in Cameroon

artículo científico publicado en 2006

Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes

artículo científico publicado en 2003

Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis ⬇️

artículo científico publicado en 2011

HIV-1 persistent viremia is frequently followed by episodes of low-level viremia

artículo científico publicado en 2017

HIV-1 tropism testing in subjects achieving undetectable HIV-1 RNA: diagnostic accuracy, viral evolution and compartmentalization

artículo científico publicado en 2013

HIV-GRADE: a publicly available, rules-based drug resistance interpretation algorithm integrating bioinformatic knowledge

artículo científico publicado en 2012

Impact of the HIV-1 genetic background and HIV-1 population size on the evolution of raltegravir resistance

artículo científico publicado en 2018

In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing

artículo científico publicado en 2010

Learning multiple evolutionary pathways from cross-sectional data

artículo científico publicado en 2005

Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing

artículo científico publicado en 2014

Methods for optimizing antiviral combination therapies

artículo científico publicado en 2003

Multicenter Evaluation of Two Next-Generation HIV-1 Quantitation Assays, Aptima Quant Dx and Cobas 6800, in Comparison to the RealTie HIV-1 Reference Assay

article

Next-generation sequencing to assess HIV tropism

artículo científico

Predicting HIV coreceptor usage on the basis of genetic and clinical covariates.

artículo científico publicado en 2007

Predicting the response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database

artículo científico publicado en 2009

Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach

artículo científico publicado en 2011

Primary HIV drug resistance and efficacy of first-line antiretroviral therapy guided by resistance testing

artículo científico publicado en 2006

Rapid Rebound of a Preexisting CXCR4-tropic Human Immunodeficiency Virus Variant After Allogeneic Transplantation With CCR5 Δ32 Homozygous Stem Cells

scientific article published on 01 February 2019

Reactivation of an occult hepatitis B virus escape mutant in an anti-HBs positive, anti-HBc negative lymphoma patient

artículo científico publicado en 2006

Read length versus depth of coverage for viral quasispecies reconstruction

artículo científico publicado en 2012

Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level

artículo científico publicado en 2007

Short communication: Different mutation patterns in subtype CRF06_cpx after mother-to-child transmission

artículo científico publicado en 2008

Short communication: selection of thymidine analogue resistance mutational patterns in children infected from a common HIV type 1 subtype G source

artículo científico publicado en 2010

Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART

artículo científico publicado en 2006

Successful therapy of hepatitis B with tenofovir in HIV-infected patients failing previous adefovir and lamivudine treatment

artículo científico publicado en 2004

The L76V mutation in HIV-1 protease is potentially associated with hypersusceptibility to protease inhibitors Atazanavir and Saquinavir: is there a clinical advantage?

artículo científico publicado en 2011

Therapeutic Immune Recovery and Reduction of CXCR4-Tropic HIV-1.

artículo científico publicado en 2016

Trends of prevalence of primary HIV drug resistance in Germany

artículo científico publicado en 2007

geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data.

artículo científico publicado en 2018

Lista de obras de Martin Däumer

A novel internally controlled real-time reverse transcription-PCR assay for HIV-1 RNA targeting the pol integrase genomic region

Analysis of immune selection as a potential cause for the presence of cleavage site mutation 431V in treatment-naive HIV type-1 isolates ⬇️

Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients.

Computational methods for the design of effective therapies against drug resistant HIV strains

Correlation between genotypic (V3 population sequencing) and phenotypic (Trofile ES) methods of characterizing co-receptor usage of HIV-1 from 200 treatment-naïve HIV patients screened for Study A4001078.

Deep sequencing reveals mutagenic effects of ribavirin during monotherapy of hepatitis C virus genotype 1-infected patients

Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

Estimating HIV evolutionary pathways and the genetic barrier to drug resistance

Evolution of protease inhibitor resistance in the gag and pol genes of HIV subtype G isolates

Evolution of raltegravir resistance during therapy.

Failure of Dolutegravir First-Line ART with Selection of Virus Carrying R263K and G118R

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

Functional domains of the human immunodeficiency virus type 1 Nef protein are conserved among different clades in Cameroon

Geno2pheno: Estimating phenotypic drug resistance from HIV-1 genotypes

Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis ⬇️

HIV-1 persistent viremia is frequently followed by episodes of low-level viremia

HIV-1 tropism testing in subjects achieving undetectable HIV-1 RNA: diagnostic accuracy, viral evolution and compartmentalization

HIV-GRADE: a publicly available, rules-based drug resistance interpretation algorithm integrating bioinformatic knowledge

Impact of the HIV-1 genetic background and HIV-1 population size on the evolution of raltegravir resistance

In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing

Learning multiple evolutionary pathways from cross-sectional data

Low-frequency drug-resistant HIV-1 and risk of virological failure to first-line NNRTI-based ART: a multicohort European case-control study using centralized ultrasensitive 454 pyrosequencing

Methods for optimizing antiviral combination therapies

Multicenter Evaluation of Two Next-Generation HIV-1 Quantitation Assays, Aptima Quant Dx and Cobas 6800, in Comparison to the RealTie HIV-1 Reference Assay

Next-generation sequencing to assess HIV tropism

Predicting HIV coreceptor usage on the basis of genetic and clinical covariates.

Predicting the response to combination antiretroviral therapy: retrospective validation of geno2pheno-THEO on a large clinical database

Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach

Primary HIV drug resistance and efficacy of first-line antiretroviral therapy guided by resistance testing

Rapid Rebound of a Preexisting CXCR4-tropic Human Immunodeficiency Virus Variant After Allogeneic Transplantation With CCR5 Δ32 Homozygous Stem Cells

Reactivation of an occult hepatitis B virus escape mutant in an anti-HBs positive, anti-HBc negative lymphoma patient

Read length versus depth of coverage for viral quasispecies reconstruction

Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level

Short communication: Different mutation patterns in subtype CRF06_cpx after mother-to-child transmission

Short communication: selection of thymidine analogue resistance mutational patterns in children infected from a common HIV type 1 subtype G source

Stable coreceptor usage of HIV in patients with ongoing treatment failure on HAART

Successful therapy of hepatitis B with tenofovir in HIV-infected patients failing previous adefovir and lamivudine treatment

The L76V mutation in HIV-1 protease is potentially associated with hypersusceptibility to protease inhibitors Atazanavir and Saquinavir: is there a clinical advantage?

Therapeutic Immune Recovery and Reduction of CXCR4-Tropic HIV-1.

Trends of prevalence of primary HIV drug resistance in Germany

geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data.