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Lista de obras de David H Mathews

A sensitivity analysis of RNA folding nearest neighbor parameters identifies a subset of free energy parameters with the greatest impact on RNA secondary structure prediction

artículo científico publicado en 2017

A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control

artículo científico publicado en 2022

Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best.

artículo científico publicado en 2017

Arginine Forks Are a Widespread Motif to Recognize Phosphate Backbones and Guanine Nucleobases in the RNA Major Groove

scientific article published on 10 November 2020

Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.

artículo científico publicado en 2017

CRISPR-Cas9-based mutagenesis frequently provokes on-target mRNA misregulation

scientific article published on 06 September 2019

Chemically Accurate Relative Folding Stability of RNA Hairpins from Molecular Simulations

artículo científico publicado en 2018

Conservation of location of several specific inhibitory codon pairs in the Saccharomyces sensu stricto yeasts reveals translational selection

scientific article published on 01 February 2019

Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study

artículo científico publicado en 2019

How to benchmark RNA secondary structure prediction accuracy

artículo científico publicado en 2019

Identification of new high affinity targets for Roquin based on structural conservation

artículo científico publicado en 2018

Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.

artículo científico publicado en 2018

LinearSampling: Linear-Time Stochastic Sampling of RNA Secondary Structure with Applications to SARS-CoV-2

artículo científico publicado en 2020

Making ends meet: New functions of mRNA secondary structure

artículo científico publicado en 2020

Modeling RNA secondary structure folding ensembles using SHAPE mapping data

artículo científico publicado en 2017

Revised RNA Dihedral Parameters for the Amber Force Field Improve RNA Molecular Dynamics

artículo científico publicado en 2017

Secondary structure prediction for RNA sequences including N<sup>6</sup>-methyladenosine

artículo científico publicado en 2022

Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription

article

Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.

artículo científico publicado en 2018

TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs

artículo científico publicado en 2017