Lista de obras - Alban Ramette - Dominio Público Uruguay

A Global Census of Marine Microbes

article

A SAMPLE-TO-REPORT SOLUTION FOR TAXONOMIC IDENTIFICATION OF CULTURED BACTERIA IN THE CLINICAL SETTING BASED ON NANOPORE SEQUENCING

scientific article published on 30 March 2020

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

artículo científico publicado en 2014

Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species

artículo científico publicado en 2006

Association between breastfeeding and eczema during childhood and adolescence: A cohort study

artículo científico publicado en 2017

Bacterial diversity and biogeochemistry of different chemosynthetic habitats of the REGAB cold seep (West African margin, 3160 m water depth)

artículo científico publicado en 2012

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean

artículo científico publicado en 2009

Bacterial taxa-area and distance-decay relationships in marine environments

artículo científico publicado en 2014

Bed-sharing and childhood asthma: from associations to causal modelling

artículo científico publicado en 2015

Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait).

artículo científico publicado en 2014

Biogeography of Deep-sea benthic bacteria at regional scale (LTER HAUSGARTEN, Fram Strait, Arctic)

artículo científico publicado en 2013

Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution

artículo científico publicado en 2007

Breastfeeding and respiratory tract infections during the first 2 years of life.

artículo científico publicado en 2017

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

artículo científico publicado en 2006

CO2 leakage alters biogeochemical and ecological functions of submarine sands.

artículo científico publicado en 2018

CO2 leakage can cause loss of benthic biodiversity in submarine sands

artículo científico publicado en 2019

Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F

artículo científico publicado en 2021

Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea

artículo científico publicado en 2014

Comparative genomics of 26 complete circular genomes of 18 different serotypes of Actinobacillus pleuropneumoniae

artículo científico publicado en 2022

Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

artículo científico publicado en 2012

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria

artículo científico publicado en 2016

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

artículo científico publicado en 2011

Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain AW7, Isolated from a Patient with Bacteremia

scientific article published on 03 October 2019

Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea

artículo científico publicado en 2011

Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields.

artículo científico publicado en 2009

Dual symbiosis with co-occurring sulfur-oxidizing symbionts in vestimentiferan tubeworms from a Mediterranean hydrothermal vent.

artículo científico publicado en 2014

Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques

artículo científico publicado en 2013

Effects of eutrophication, seasonality and macrofouling on the diversity of bacterial biofilms in equatorial coral reefs

artículo científico publicado en 2012

Effects of nitrobenzene contamination and of bioaugmentation on nitrification and ammonia-oxidizing bacteria in soil

artículo científico publicado en 2009

Epidemiology of Human Adenoviruses: A 20-Year Retrospective Observational Study in Hospitalized Patients in Bern, Switzerland

scientific article published on 05 April 2020

Evaluation of primer pairs for microbiome profiling from soils to humans within the One Health framework

artículo científico publicado en 2020

Factors controlling the distribution of anaerobic methanotrophic communities in marine environments: Evidence from intact polar membrane lipids

article

Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and hydrogen cyanide from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco

artículo científico publicado en 2006

Global dispersion and local diversification of the methane seep microbiome.

artículo científico publicado en 2015

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

artículo científico publicado en 2011

Heterogeneous Genetic Location of mcr-1 in Colistin-Resistant Escherichia coli Isolated from Humans and Retail Chicken Meat in Switzerland: Emergence of mcr-1-Carrying IncK2 Plasmids

artículo científico publicado en 2017

High symbiont diversity in the bone-eating worm Osedax mucofloris from shallow whale-falls in the North Atlantic

artículo científico publicado en 2010

Host switching pathogens, infectious outbreaks and zoonosis: A Marie Skłodowska-Curie innovative training network (HONOURs) ⬇️

artículo científico publicado en 2018

Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea)

artículo científico publicado en 2017

Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil

artículo científico

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

Impact of space, time and complex environments on microbial communities

artículo científico publicado en 2009

Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria

artículo científico publicado en 2010

Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform

artículo científico publicado en 2018

In situ development of a methanotrophic microbiome in deep-sea sediments

scientific article published on 28 August 2018

Influence of pig farming on the human's nasal microbiota: The key role of the airborne microbial communities

artículo científico publicado en 2018

Inter- and intra-habitat bacterial diversity associated with cold-water corals

artículo científico publicado en 2009

Longitudinal Associations between Respiratory Infections and Asthma in Young Children.

artículo científico publicado en 2018

Macroecological patterns of marine bacteria on a global scale

article by Anthony S. Amend et al published 7 November 2012 in Journal of Biogeography

Mats of psychrophilic thiotrophic bacteria associated with cold seeps of the Barents Sea

article by S. Grünke et al published 6 August 2012 in Biogeosciences

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy.

artículo científico publicado en 2016

Microbial and chemical characterization of underwater fresh water springs in the Dead Sea

artículo científico publicado en 2012

Microbial communities of deep-sea methane seeps at Hikurangi continental margin (New Zealand)

artículo científico publicado en 2013

Microbial diversity of eolian dust sources from saline lake sediments and biological soil crusts in arid Southern Australia

artículo científico publicado en 2012

Microbial habitat connectivity across spatial scales and hydrothermal temperature gradients at Guaymas Basin ⬇️

artículo científico publicado en 2013

Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem

artículo científico publicado en 2007

Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets

artículo científico publicado en 2010

Multivariate analyses in microbial ecology

artículo científico publicado en 2007

Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life

article

Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats

artículo científico publicado en 2010

Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability

artículo científico publicado en 2003

Polymorphism of the polyketide synthase gene phID in biocontrol fluorescent pseudomonads producing 2,4-diacetylphloroglucinol and comparison of PhID with plant polyketide synthases.

artículo científico publicado en 2001

Prevalence of carbapenem-resistant Acinetobacter baumannii from 2005 to 2016 in Switzerland.

artículo científico publicado en 2018

Prevalence of cough throughout childhood: A cohort study

artículo científico publicado en 2017

Prevalence of fluorescent pseudomonads producing antifungal phloroglucinols and/or hydrogen cyanide in soils naturally suppressive or conducive to tobacco black root rot.

artículo científico publicado en 2003

Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.

artículo científico publicado en 2008

Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin

artículo científico publicado en 2011

Quantification of the effects of ocean acidification on sediment microbial communities in the environment: the importance of ecosystem approaches

artículo científico publicado en 2016

Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes

artículo científico publicado en 2011

Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities

artículo científico publicado en 2009

Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells

scientific article published on 29 August 2019

Recurrent Mycobacterium chelonae Skin Infection Unmasked as Factitious Disorder Using Bacterial Whole Genome Sequence Analysis

scientific article published on 22 October 2020

Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges

artículo científico publicado en 2013

Repeatedly evolved host-specific ectosymbioses between sulfur-oxidizing bacteria and amphipods living in a cave ecosystem

artículo científico publicado en 2012

Seagrass biofilm communities at a naturally CO2 -rich vent

artículo científico publicado en 2015

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

article

Spatial patterns and links between microbial community composition and function in cyanobacterial mats

artículo científico publicado en 2014

Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)

artículo científico publicado en 2014

Spatial scales of bacterial diversity in cold-water coral reef ecosystems

artículo científico publicado en 2012

Species abundance and diversity of Burkholderia cepacia complex in the environment

artículo científico publicado en 2005

Temporal shifts of the Norway lobster (Nephrops norvegicus) gut bacterial communities.

artículo científico publicado en 2010

The International Virus Bioinformatics Meeting 2020

artículo científico publicado en 2020

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data

artículo científico publicado en 2014

The bacterial species definition in the genomic era.

artículo científico publicado en 2006

The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments

artículo científico publicado en 2011

The simple 10-item PARC tool to predict childhood asthma - an external validation

artículo científico publicado en 2018

Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands

artículo científico publicado en 2009

Toward a more robust assessment of intraspecies diversity, using fewer genetic markers

artículo científico publicado en 2006

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial

artículo científico publicado en 2019

Whole-Genome Sequence of the First Extended-Spectrum β-Lactamase-Producing Strain of Salmonella enterica subsp. enterica Serovar Napoli

scientific article published on 13 September 2018

Whole-Genome Sequencing of Human Enteroviruses from Clinical Samples by Nanopore Direct RNA Sequencing

artículo científico publicado en 2020

Lista de obras de Alban Ramette

A Global Census of Marine Microbes

A SAMPLE-TO-REPORT SOLUTION FOR TAXONOMIC IDENTIFICATION OF CULTURED BACTERIA IN THE CLINICAL SETTING BASED ON NANOPORE SEQUENCING

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species

Association between breastfeeding and eczema during childhood and adolescence: A cohort study

Bacterial diversity and biogeochemistry of different chemosynthetic habitats of the REGAB cold seep (West African margin, 3160 m water depth)

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean

Bacterial taxa-area and distance-decay relationships in marine environments

Bed-sharing and childhood asthma: from associations to causal modelling

Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait).

Biogeography of Deep-sea benthic bacteria at regional scale (LTER HAUSGARTEN, Fram Strait, Arctic)

Biogeography: an emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution

Breastfeeding and respiratory tract infections during the first 2 years of life.

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

CO2 leakage alters biogeochemical and ecological functions of submarine sands.

CO2 leakage can cause loss of benthic biodiversity in submarine sands

Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F

Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea

Comparative genomics of 26 complete circular genomes of 18 different serotypes of Actinobacillus pleuropneumoniae

Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain AW7, Isolated from a Patient with Bacteremia

Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea

Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields.

Dual symbiosis with co-occurring sulfur-oxidizing symbionts in vestimentiferan tubeworms from a Mediterranean hydrothermal vent.

Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques

Effects of eutrophication, seasonality and macrofouling on the diversity of bacterial biofilms in equatorial coral reefs

Effects of nitrobenzene contamination and of bioaugmentation on nitrification and ammonia-oxidizing bacteria in soil

Epidemiology of Human Adenoviruses: A 20-Year Retrospective Observational Study in Hospitalized Patients in Bern, Switzerland

Evaluation of primer pairs for microbiome profiling from soils to humans within the One Health framework

Factors controlling the distribution of anaerobic methanotrophic communities in marine environments: Evidence from intact polar membrane lipids

Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and hydrogen cyanide from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco

Global dispersion and local diversification of the methane seep microbiome.

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

Heterogeneous Genetic Location of mcr-1 in Colistin-Resistant Escherichia coli Isolated from Humans and Retail Chicken Meat in Switzerland: Emergence of mcr-1-Carrying IncK2 Plasmids

High symbiont diversity in the bone-eating worm Osedax mucofloris from shallow whale-falls in the North Atlantic

Host switching pathogens, infectious outbreaks and zoonosis: A Marie Skłodowska-Curie innovative training network (HONOURs) ⬇️

Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea)

Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

Impact of space, time and complex environments on microbial communities

Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria

Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform

In situ development of a methanotrophic microbiome in deep-sea sediments

Influence of pig farming on the human's nasal microbiota: The key role of the airborne microbial communities

Inter- and intra-habitat bacterial diversity associated with cold-water corals

Longitudinal Associations between Respiratory Infections and Asthma in Young Children.

Macroecological patterns of marine bacteria on a global scale

Mats of psychrophilic thiotrophic bacteria associated with cold seeps of the Barents Sea

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy.

Microbial and chemical characterization of underwater fresh water springs in the Dead Sea

Microbial communities of deep-sea methane seeps at Hikurangi continental margin (New Zealand)

Microbial diversity of eolian dust sources from saline lake sediments and biological soil crusts in arid Southern Australia

Microbial habitat connectivity across spatial scales and hydrothermal temperature gradients at Guaymas Basin ⬇️

Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem

Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets

Multivariate analyses in microbial ecology

Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life

Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats

Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability

Polymorphism of the polyketide synthase gene phID in biocontrol fluorescent pseudomonads producing 2,4-diacetylphloroglucinol and comparison of PhID with plant polyketide synthases.

Prevalence of carbapenem-resistant Acinetobacter baumannii from 2005 to 2016 in Switzerland.

Prevalence of cough throughout childhood: A cohort study

Prevalence of fluorescent pseudomonads producing antifungal phloroglucinols and/or hydrogen cyanide in soils naturally suppressive or conducive to tobacco black root rot.

Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.

Pseudomonas protegens sp. nov., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin

Quantification of the effects of ocean acidification on sediment microbial communities in the environment: the importance of ecosystem approaches

Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes

Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities

Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells

Recurrent Mycobacterium chelonae Skin Infection Unmasked as Factitious Disorder Using Bacterial Whole Genome Sequence Analysis

Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges

Repeatedly evolved host-specific ectosymbioses between sulfur-oxidizing bacteria and amphipods living in a cave ecosystem

Seagrass biofilm communities at a naturally CO2 -rich vent

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

Spatial patterns and links between microbial community composition and function in cyanobacterial mats

Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)

Spatial scales of bacterial diversity in cold-water coral reef ecosystems