Lista de obras - John Westbrook - Dominio Público Uruguay

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update

artículo científico publicado en 2017

A biologist's guide to synchrotron facilities: the BioSync web resource

artículo científico publicado en 2002

A framework for scientific data modeling and automated software development

artículo científico publicado en 2004

An interactive FORTRAN program for three-dimensional molecular visualization

scholarly article by A.R. Srinivasan et al published July 1992 in Computers & Chemistry

An ontology driven architecture for derived representations of macromolecular structure

artículo científico publicado en 2002

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

scientific article published on 08 April 2019

Archiving and disseminating integrative structure models

artículo científico publicado en 2019

Archiving of Integrative Structural Models

artículo científico publicado en 2018

Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank

artículo científico publicado en 2004

Bioinformatic Databases

CIF Applications. XI.A La Mode: a ligand and monomer object data environment. I. Automated construction of mmCIF monomer and ligand models

Chemical annotation of small and peptide-like molecules at the Protein Data Bank

artículo científico publicado en 2013

Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

artículo científico publicado en 2017

Correction: Fall armyworm migration across the Lesser Antilles and the potential for genetic exchanges between North and South American populations

artículo científico publicado en 2017

Crystal, molecular, and electronic structures of pentaammineruthenium(III)-thioether complexes

scientific article published in 1989

Crystallography and Databases

scholarly article by Ian J. Bruno et al published 7 August 2017 in Data Science Journal

DCC: a Swiss army knife for structure factor analysis and validation

artículo científico publicado en 2016

Data management challenges in three-dimensional EM.

artículo científico publicado en 2012

Data to knowledge: how to get meaning from your result.

artículo científico publicado en 2015

Design of a data model for developing laboratory information management and analysis systems for protein production

artículo científico publicado en 2005

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules

artículo científico publicado en 2018

EMDataBank unified data resource for 3DEM.

artículo científico publicado en 2015

EMDataBank.org: unified data resource for CryoEM

artículo científico publicado en 2011

Emotional Awareness Moderates the Relationship Between Childhood Abuse and Borderline Personality Disorder Symptom Factors

artículo científico publicado en 2016

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

scientific article published on 04 December 2020

Extension of the sasCIF format and its applications for data processing and deposition

artículo científico publicado en 2016

Fall armyworm migration across the Lesser Antilles and the potential for genetic exchanges between North and South American populations

artículo científico publicado en 2017

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

artículo científico publicado en 2019

Geometric Parameters in Nucleic Acids: Nitrogenous Bases

article

Gossypolhemiquinone, a dimeric sesquiterpenoid identified in cotton (Gossypium).

artículo científico publicado en 2015

How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals

scientific article published on 27 December 2018

How to use the PSI Structural Genomics Knowledgebase to Enable Research

Impact of the Protein Data Bank on antineoplastic approvals

artículo científico publicado en 2020

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

artículo científico publicado en 2014

Indole RSK inhibitors. Part 1: Discovery and initial SAR ⬇️

artículo científico publicado el 14 de octubre de 2011

Ligand Depot: a data warehouse for ligands bound to macromolecules

artículo científico publicado en 2004

Molecular and electronic structure of (L-histidinato)pentammineruthenium(III) chloride monohydrate, (H3N)5RuIII(his)Cl3·H2O. X-ray structure, single-crystal polarized charge-transfer spectra, and ab initio and semiempirical molecular orbital calcula

article published in 1987

Molecular and electronic structures of pentaammineruthenium(II)-thioether complexes. The nature of Ru(II)-S back bonding elucidated by structural, electronic spectral, and molecular orbital studies

artículo científico publicado en 1992

Molecular electrostatic potentials and partial atomic charges from correlated wave functions: Applications to the electronic ground and excited states of 3-methylindole

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

artículo científico publicado en 2017

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

artículo científico publicado en 2015

Nucleic acid crystallography: a view from the nucleic acid database.

artículo científico publicado en 1996

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

artículo científico publicado en 2017

Ontologies for three-dimensional molecular structure

Organoiodinane reagents for phosphate cleavage: experimental and computational studies

article

Outcome of a workshop on applications of protein models in biomedical research

artículo científico publicado en 2009

Outcome of a workshop on archiving structural models of biological macromolecules

artículo científico publicado en 2006

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

artículo científico publicado en 2015

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

artículo científico publicado en 2016

Outcome of the first electron microscopy validation task force meeting

artículo científico publicado en 2012

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank

artículo científico publicado en 2024

PDBML: the representation of archival macromolecular structure data in XML.

artículo científico publicado en 2004

RCSB Protein Data Bank 1D Tools and Services

artículo científico publicado en 2020

RCSB Protein Data Bank: Architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive

artículo científico publicado en 2020

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

artículo científico publicado en 2019

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

artículo científico publicado en 2017

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

article

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

artículo científico publicado en 2020

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

artículo científico publicado en 2008

RNAML: a standard syntax for exchanging RNA information.

artículo científico publicado en 2002

Realism about PDB.

artículo científico publicado en 2007

Remediation of the protein data bank archive

artículo científico publicado en 2008

Report of the working group on crystal phase identifiers

artículo científico publicado en 2005

Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.

artículo científico publicado en 2013

Representation of viruses in the remediated PDB archive

artículo científico publicado en 2008

Simple models for solvation effects on electronic transition energies: Formaldehyde and water

Simulation of photophysical processes of indoles in solution

Solid-state changes in ligand-to-metal charge-transfer spectra of (NH3)5Ru(III)(2,4-dihydroxybenzoate) and (NH3)5Ru(III)(xanthine) chromophores

artículo científico publicado en 2008

Solvent effects on the adiabatic free energy difference between the ground and excited states of methylindole in water

Specification of the Crystallographic Information File format, version 2.0

Synthesis and properties of the valence tautomer of cis-iodosocyclopropanecarboxylic acid: 4,5-methano-1-hydroxyiodoxol-3(1H)-one

article

TargetDB: a target registration database for structural genomics projects

artículo científico

The CCPN project: an interim report on a data model for the NMR community

artículo científico publicado en 2002

The Nucleic Acid Database

article from 2002

The Nucleic Acid Database: A resource for nucleic acid science

artículo científico publicado en 1998

The Nucleic Acid Database: Present and Future

artículo científico publicado en 1996

The Nucleic Acid Database: new features and capabilities

artículo científico publicado en 2013

The PDB Format, mmCIF Formats, and Other Data Formats

The PDB format, mmCIF, and other data formats

artículo científico publicado en 2003

The Protein Data Bank

artículo científico publicado en 2002

The Protein Data Bank

The Protein Data Bank and lessons in data management

artículo científico publicado en 2004

The Protein Data Bank and structural genomics

artículo científico publicado en 2003

The Protein Data Bank: A Case Study in Management of Community Data

article by Helen M. Berman et al published 1 January 2004 in Current Proteomics: the journal for current and in-depth reviews on proteomics

The Protein Data Bank: unifying the archive

artículo científico publicado en 2002

The Protein Model Portal

artículo científico publicado en 2009

The RCSB PDB information portal for structural genomics

artículo científico publicado en 2006

The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema

artículo científico publicado en 2005

The RCSB Protein Data Bank: new resources for research and education

artículo científico publicado en 2013

The RCSB Protein Data Bank: redesigned web site and web services

artículo científico publicado en 2011

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

artículo científico publicado en 2015

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

artículo científico publicado en 2016

The Structural Biology Knowledgebase - search Online for Protein Sequences, Structures, Functions, Methods and More

The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods

artículo científico publicado en 2011

The TRUST Principles for digital repositories

artículo científico publicado en 2020

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

artículo científico publicado en 2014

The distribution and query systems of the RCSB Protein Data Bank

artículo científico publicado en 2004

The evolution of the RCSB Protein Data Bank website

The impact of structural genomics on the protein data bank

artículo científico publicado en 2004

The need for dictionaries, ontologies, and controlled vocabularies

artículo científico

The nucleic acid database

artículo científico publicado en 2003

The protein structure initiative structural genomics knowledgebase.

artículo científico publicado en 2008

Tools for the automatic identification and classification of RNA base pairs

artículo científico publicado en 2003

Validation of Structures in the Protein Data Bank

artículo científico publicado en 2017

Validation of protein structures for protein data bank

artículo científico publicado en 2003

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

artículo científico publicado en 2018

[30] Macromolecular crystallographic information file

article

Lista de obras de John Westbrook

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update

A biologist's guide to synchrotron facilities: the BioSync web resource

A framework for scientific data modeling and automated software development

An interactive FORTRAN program for three-dimensional molecular visualization

An ontology driven architecture for derived representations of macromolecular structure

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

Archiving and disseminating integrative structure models

Archiving of Integrative Structural Models

Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank

Bioinformatic Databases

CIF Applications. XI.A La Mode: a ligand and monomer object data environment. I. Automated construction of mmCIF monomer and ligand models

Chemical annotation of small and peptide-like molecules at the Protein Data Bank

Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

Correction: Fall armyworm migration across the Lesser Antilles and the potential for genetic exchanges between North and South American populations

Crystal, molecular, and electronic structures of pentaammineruthenium(III)-thioether complexes

Crystallography and Databases

DCC: a Swiss army knife for structure factor analysis and validation

Data management challenges in three-dimensional EM.

Data to knowledge: how to get meaning from your result.

Design of a data model for developing laboratory information management and analysis systems for protein production

Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules

EMDataBank unified data resource for 3DEM.

EMDataBank.org: unified data resource for CryoEM

Emotional Awareness Moderates the Relationship Between Childhood Abuse and Borderline Personality Disorder Symptom Factors

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

Extension of the sasCIF format and its applications for data processing and deposition

Fall armyworm migration across the Lesser Antilles and the potential for genetic exchanges between North and South American populations

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

Geometric Parameters in Nucleic Acids: Nitrogenous Bases

Gossypolhemiquinone, a dimeric sesquiterpenoid identified in cotton (Gossypium).

How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals

How to use the PSI Structural Genomics Knowledgebase to Enable Research

Impact of the Protein Data Bank on antineoplastic approvals

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

Indole RSK inhibitors. Part 1: Discovery and initial SAR ⬇️

Ligand Depot: a data warehouse for ligands bound to macromolecules

Molecular and electronic structure of (L-histidinato)pentammineruthenium(III) chloride monohydrate, (H3N)5RuIII(his)Cl3·H2O. X-ray structure, single-crystal polarized charge-transfer spectra, and ab initio and semiempirical molecular orbital calcula

Molecular and electronic structures of pentaammineruthenium(II)-thioether complexes. The nature of Ru(II)-S back bonding elucidated by structural, electronic spectral, and molecular orbital studies

Molecular electrostatic potentials and partial atomic charges from correlated wave functions: Applications to the electronic ground and excited states of 3-methylindole

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

Nucleic acid crystallography: a view from the nucleic acid database.

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

Ontologies for three-dimensional molecular structure

Organoiodinane reagents for phosphate cleavage: experimental and computational studies

Outcome of a workshop on applications of protein models in biomedical research

Outcome of a workshop on archiving structural models of biological macromolecules

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

Outcome of the first electron microscopy validation task force meeting

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank

PDBML: the representation of archival macromolecular structure data in XML.

RCSB Protein Data Bank 1D Tools and Services

RCSB Protein Data Bank: Architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

RNAML: a standard syntax for exchanging RNA information.

Realism about PDB.

Remediation of the protein data bank archive

Report of the working group on crystal phase identifiers

Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.

Representation of viruses in the remediated PDB archive

Simple models for solvation effects on electronic transition energies: Formaldehyde and water

Simulation of photophysical processes of indoles in solution

Solid-state changes in ligand-to-metal charge-transfer spectra of (NH3)5Ru(III)(2,4-dihydroxybenzoate) and (NH3)5Ru(III)(xanthine) chromophores

Solvent effects on the adiabatic free energy difference between the ground and excited states of methylindole in water

Specification of the Crystallographic Information File format, version 2.0

Synthesis and properties of the valence tautomer of cis-iodosocyclopropanecarboxylic acid: 4,5-methano-1-hydroxyiodoxol-3(1H)-one

TargetDB: a target registration database for structural genomics projects

The CCPN project: an interim report on a data model for the NMR community

The Nucleic Acid Database

The Nucleic Acid Database

The Nucleic Acid Database: A resource for nucleic acid science

The Nucleic Acid Database: Present and Future

The Nucleic Acid Database: new features and capabilities