Lista de obras - Chongle Pan - Dominio Público Uruguay

(15)N- and (2)H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity.

artículo científico publicado en 2014

A graph-theoretic approach for the separation of b and y ions in tandem mass spectra

artículo científico publicado en 2004

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

artículo científico publicado en 2010

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics

artículo científico publicado en 2007

Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

artículo científico publicado en 2018

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

artículo científico publicado en 2012

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

artículo científico publicado en 2012

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).

artículo científico publicado en 2016

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

artículo científico publicado en 2012

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

artículo científico publicado en 2011

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

artículo científico publicado en 2009

Deep neural network improves the estimation of polygenic risk scores for breast cancer

scientific article published on 02 October 2020

Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community

artículo científico publicado en 2014

Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome

artículo científico publicado en 2013

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems

artículo científico publicado en 2006

Elevated temperature alters proteomic responses of individual organisms within a biofilm community.

artículo científico publicado en 2014

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics

artículo científico publicado en 2014

Exhaustive database searching for amino acid mutations in proteomes.

artículo científico publicado en 2012

Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam

artículo científico publicado en 2014

Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage

artículo científico publicado en 2016

Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots

scientific article published on 10 September 2020

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva

artículo científico publicado en 2013

Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments.

artículo científico publicado en 2013

Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities

artículo científico publicado en 2012

Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis

artículo científico publicado en 2009

Improved genome annotation for Zymomonas mobilis

article published in 2009

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

artículo científico publicado en 2012

Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system

artículo científico publicado en 2016

Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes

artículo científico publicado en 2022

Isolation and chemical analysis of nanoparticles from English ivy (Hedera helix L.).

artículo científico publicado en 2013

MIDAS: a database-searching algorithm for metabolite identification in metabolomics.

artículo científico publicado en 2014

Mass spectrometric approaches for characterizing bacterial proteomes.

artículo científico publicado en 2004

Measuring Dissociation Rate Constants of Protein Complexes through Subunit Exchange: Experimental Design and Theoretical Modeling ⬇️

artículo científico publicado el 14 de diciembre de 2011

Metagenome sequencing of a coastal marine microbial community from monterey bay, california.

artículo científico publicado en 2015

Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case

artículo científico publicado en 2015

Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities

artículo científico publicado en 2013

Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities.

artículo científico publicado en 2018

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota

artículo científico publicado en 2015

Multipole-storage-assisted dissociation for the characterization of large proteins and simple protein mixtures by ESI-FTICR-MS

artículo científico publicado en 2005

Omega: an overlap-graph de novo assembler for metagenomics.

artículo científico

Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus

artículo científico publicado en 2012

Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris

artículo científico publicado en 2009

Phylogenetically conserved resource partitioning in the coastal microbial loop.

artículo científico

Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits

artículo científico publicado en 2021

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

artículo científico publicado en 2006

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

artículo científico publicado en 2016

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community

artículo científico publicado en 2011

Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities

artículo científico publicado en 2016

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

artículo científico publicado en 2016

Proteomic and Mutant Analysis of the CO2 Concentrating Mechanism of Hydrothermal Vent Chemolithoautotroph Thiomicrospira crunogena.

artículo científico publicado en 2017

Quantitative metaproteomics: functional insights into microbial communities.

artículo científico publicado en 2014

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

artículo científico publicado en 2011

Quantitative tracking of isotope flows in proteomes of microbial communities

artículo científico publicado en 2011

Rhodopseudomonas palustris CGA010 Proteome Implicates Extracytoplasmic Function Sigma Factor in Stress Response.

artículo científico publicado en 2015

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

artículo científico publicado en 2006

Sample handling and mass spectrometry for microbial metaproteomic analyses.

artículo científico publicado en 2013

Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance

artículo científico publicado en 2015

Sipros Ensemble Improves Database Searching and Filtering for Complex Metaproteomics

artículo científico publicado en 2017

Sipros/ProRata: a versatile informatics system for quantitative community proteomics.

artículo científico publicado en 2013

Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific.

artículo científico publicado en 2013

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

artículo científico publicado en 2011

Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis

artículo científico publicado en 2014

Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues.

artículo científico publicado en 2004

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos

artículo científico publicado en 2012

Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

artículo científico publicado en 2013

Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians’ Evaluation of Large Language Models for Smoking Cessation Interventions

artículo científico publicado en 2024

Lista de obras de Chongle Pan

(15)N- and (2)H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity.

A graph-theoretic approach for the separation of b and y ions in tandem mass spectra

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry.

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics

Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)).

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

Deep neural network improves the estimation of polygenic risk scores for breast cancer

Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community

Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems

Elevated temperature alters proteomic responses of individual organisms within a biofilm community.

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics

Exhaustive database searching for amino acid mutations in proteomes.

Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam

Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage

Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva

Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments.

Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities

Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis

Improved genome annotation for Zymomonas mobilis

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system

Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes

Isolation and chemical analysis of nanoparticles from English ivy (Hedera helix L.).

MIDAS: a database-searching algorithm for metabolite identification in metabolomics.

Mass spectrometric approaches for characterizing bacterial proteomes.

Measuring Dissociation Rate Constants of Protein Complexes through Subunit Exchange: Experimental Design and Theoretical Modeling ⬇️

Metagenome sequencing of a coastal marine microbial community from monterey bay, california.

Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case

Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities

Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities.

Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota

Multipole-storage-assisted dissociation for the characterization of large proteins and simple protein mixtures by ESI-FTICR-MS

Omega: an overlap-graph de novo assembler for metagenomics.

Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus

Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris

Phylogenetically conserved resource partitioning in the coastal microbial loop.

Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community

Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

Proteomic and Mutant Analysis of the CO2 Concentrating Mechanism of Hydrothermal Vent Chemolithoautotroph Thiomicrospira crunogena.

Quantitative metaproteomics: functional insights into microbial communities.

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

Quantitative tracking of isotope flows in proteomes of microbial communities

Rhodopseudomonas palustris CGA010 Proteome Implicates Extracytoplasmic Function Sigma Factor in Stress Response.

Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.

Sample handling and mass spectrometry for microbial metaproteomic analyses.

Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance

Sipros Ensemble Improves Database Searching and Filtering for Complex Metaproteomics

Sipros/ProRata: a versatile informatics system for quantitative community proteomics.

Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific.

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis

Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogues.

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos

Systems biology analysis of Zymomonas mobilis ZM4 ethanol stress responses.

Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians’ Evaluation of Large Language Models for Smoking Cessation Interventions