Lista de obras - Rune Matthiesen - Dominio Público Uruguay

Adaptive evolution and divergence of SERPINB3: a young duplicate in great Apes

artículo científico publicado en 2014

Algorithms and methods for correlating experimental results with annotation databases.

artículo científico

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

artículo científico publicado en 2007

Analysis of carbohydrates by mass spectrometry

scientific article published on 01 January 2007

Analysis of mass spectrometry data in proteomics.

artículo científico publicado en 2008

Bottom up proteomics data analysis strategies to explore protein modifications and genomic variants.

artículo científico publicado en 2015

Celecoxib inhibits interleukin-12 alphabeta and beta2 folding and secretion by a novel COX2-independent mechanism involving chaperones of the endoplasmic reticulum.

artículo científico publicado en 2006

Characterization and comprehensive proteome profiling of exosomes secreted by hepatocytes

artículo científico publicado en 2008

Comparative analyses of the Conserved Oligomeric Golgi (COG) complex in vertebrates

artículo científico publicado en 2010

Comparing Peptide Spectra Matches Across Search Engines

artículo científico publicado en 2020

Comprehensive comparison of collision induced dissociation and electron transfer dissociation.

artículo científico publicado en 2008

Computational approach for identification and characterization of GPI-anchored peptides in proteomics experiments

artículo científico publicado en 2007

Computational methods for analysis of two-dimensional gels

artículo científico publicado en 2010

ContDist: a tool for the analysis of quantitative gene and promoter properties

artículo científico publicado en 2009

Data Imputation in Merged Isobaric Labeling-Based Relative Quantification Datasets

artículo científico publicado en 2020

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

artículo científico publicado en 2004

Deep Sequencing Analysis Reveals Distinctive Non-Coding RNAs When Comparing Tumor Multidrug-Resistant Cells and Extracellular Vesicles with Drug-Sensitive Counterparts

artículo científico publicado en 2020

Differential expression of alpha-2,3-sialyltransferases and alpha-1,3/4-fucosyltransferases regulates the levels of sialyl Lewis a and sialyl Lewis x in gastrointestinal carcinoma cells.

artículo científico publicado en 2009

Differential fragmentation patterns of pectin oligogalacturonides observed by nanoelectrospray quadrupole ion-trap mass spectrometry using automated spectra interpretation.

artículo científico publicado en 2007

Discussion on common data analysis strategies used in MS-based proteomics.

artículo científico publicado en 2011

Down-regulation of the strawberry Bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant

artículo científico publicado en 2006

Efficient transesterification of sucrose catalysed by the metalloprotease thermolysin in dimethylsulfoxide.

artículo científico publicado en 2002

Erratum to: Methylation of the miR-126 gene associated with glioma progression.

artículo científico publicado en 2016

Evening and morning alterations in Obstructive Sleep Apnea red blood cell proteome

artículo científico publicado en 2017

Extra-cellular vesicles carry proteome of cancer hallmarks

artículo científico publicado en 2020

Extracting monoisotopic single-charge peaks from liquid chromatography-electrospray ionization-mass spectrometry

artículo científico publicado en 2007

Folding Status Is Determinant over Traffic-Competence in Defining CFTR Interactors in the Endoplasmic Reticulum.

artículo científico publicado en 2019

Functional blockade of α5β1 integrin induces scattering and genomic landscape remodeling of hepatic progenitor cells.

artículo científico publicado en 2010

Gains, losses and changes of function after gene duplication: study of the metallothionein family

artículo científico publicado en 2011

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress

artículo científico publicado en 2014

Glycation modulates glutamatergic signaling and exacerbates Parkinson’s disease-like phenotypes

artículo científico publicado en 2022

Human spermatogenic failure purges deleterious mutation load from the autosomes and both sex chromosomes, including the gene DMRT1.

artículo científico publicado en 2013

Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping

artículo científico publicado en 2009

Identification of salt-tolerant Sinorhizobium sp. strain BL3 membrane proteins based on proteomics

artículo científico publicado en 2010

Identification of species by multiplex analysis of variable-length sequences

artículo científico publicado en 2010

IgG+ Extracellular Vesicles Measure Therapeutic Response in Advanced Pancreatic Cancer

artículo científico publicado en 2022

Influence of Aldehyde Dehydrogenase Inhibition on Stemness of Endometrial Cancer Stem Cells

artículo científico publicado en 2024

Integration of gel-based proteome data with pProRep.

artículo científico publicado en 2006

Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs)

article

Integrative genomic signatures of hepatocellular carcinoma derived from nonalcoholic Fatty liver disease.

artículo científico publicado en 2015

Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides

artículo científico publicado en 2020

Interpretation of collision-induced fragmentation tandem mass spectra of posttranslationally modified peptides

artículo científico publicado en 2007

Interpretation of tandem mass spectra of posttranslationally modified peptides

artículo científico publicado en 2013

Interpreting peptide mass spectra by VEMS.

artículo científico publicado en 2003

Introduction to Mass Spectrometry-Based Proteomics

artículo científico publicado en 2020

Introduction to omics.

artículo científico publicado en 2010

Introduction to proteomics

artículo científico publicado en 2007

Is the Proteome of Bronchoalveolar Lavage Extracellular Vesicles a Marker of Advanced Lung Cancer?

artículo científico publicado en 2020

LAMP2A regulates the loading of proteins into exosomes

artículo científico publicado en 2022

LC-MS Spectra Processing

artículo científico publicado en 2020

LC-MS spectra processing.

artículo científico publicado en 2013

Loss of the glycine N-methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice

artículo científico publicado en 2008

MS-Based Biomarker Discovery in Bronchoalveolar Lavage Fluid for Lung Cancer

scientific article published on 12 November 2019

Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry

artículo científico publicado en 2020

Methods and algorithms for quantitative proteomics by mass spectrometry

artículo científico publicado en 2013

Methods and algorithms for relative quantitative proteomics by mass spectrometry

artículo científico publicado en 2010

Methylation of the miR-126 gene associated with glioma progression

artículo científico publicado en 2015

New insights into functional regulation in MS-based drug profiling.

artículo científico publicado en 2016

New insights into host-parasite ubiquitin proteome dynamics in P. falciparum infected red blood cells using a TUBEs-MS approach

artículo científico

Organization of proteomics data with YassDB.

artículo científico publicado en 2007

Overview of proteomics studies in obstructive sleep apnea

artículo científico publicado en 2015

Overview on techniques in cluster analysis.

artículo científico publicado en 2010

PAnalyzer: a software tool for protein inference in shotgun proteomics.

artículo científico publicado en 2012

Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma

artículo científico publicado en 2019

Proteomic Profiling of Plasma- and Gut-Derived Extracellular Vesicles in Obesity

artículo científico publicado en 2024

Proteomics facing the combinatorial problem

artículo científico publicado en 2010

Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach

Quantitation with virtual expert mass spectrometrist

scientific article published on 01 January 2007

Quantitative proteome analysis of an antibiotic resistant Escherichia coli exposed to tetracycline reveals multiple affected metabolic and peptidoglycan processes

artículo científico publicado en 2016

Quantitative proteomic analysis of post-translational modifications of human histones

artículo científico publicado en 2006

Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E

artículo científico publicado en 2006

Red Blood Cells in Clinical Proteomics.

artículo científico publicado en 2017

SIR: Deterministic protein inference from peptides assigned to MS data.

artículo científico publicado en 2012

SNP-PHAGE: high-throughput SNP discovery pipeline.

artículo científico publicado en 2010

Sequence handling by sequence analysis toolbox v1.0.

artículo científico publicado en 2007

Shotgun mass spectrometry-based lipid profiling identifies and distinguishes between chronic inflammatory diseases

artículo científico publicado en 2021

Solution to Dark Matter Identified by Mass-Tolerant Database Search

artículo científico publicado en 2020

Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry

artículo científico publicado en 2005

Strategies to Identify Recognition Signals and Targets of SUMOylation.

artículo científico publicado en 2012

The Antitumor Activity of a Lead Thioxanthone is Associated with Alterations in Cholesterol Localization

artículo científico publicado en 2018

Useful mass spectrometry programs freely available on the internet

artículo científico publicado en 2007

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

artículo científico publicado en 2005

Virtual Expert Mass Spectrometrist v3.0: an integrated tool for proteome analysis

artículo científico publicado en 2007

Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.

artículo científico publicado en 2010

WNK1 phosphorylation sites in TBC1D1 and TBC1D4 modulate cell surface expression of GLUT1

scientific article published on 06 December 2019

Lista de obras de Rune Matthiesen

Adaptive evolution and divergence of SERPINB3: a young duplicate in great Apes

Algorithms and methods for correlating experimental results with annotation databases.

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

Analysis of carbohydrates by mass spectrometry

Analysis of mass spectrometry data in proteomics.

Bottom up proteomics data analysis strategies to explore protein modifications and genomic variants.

Celecoxib inhibits interleukin-12 alphabeta and beta2 folding and secretion by a novel COX2-independent mechanism involving chaperones of the endoplasmic reticulum.

Characterization and comprehensive proteome profiling of exosomes secreted by hepatocytes

Comparative analyses of the Conserved Oligomeric Golgi (COG) complex in vertebrates

Comparing Peptide Spectra Matches Across Search Engines

Comprehensive comparison of collision induced dissociation and electron transfer dissociation.

Computational approach for identification and characterization of GPI-anchored peptides in proteomics experiments

Computational methods for analysis of two-dimensional gels

ContDist: a tool for the analysis of quantitative gene and promoter properties

Data Imputation in Merged Isobaric Labeling-Based Relative Quantification Datasets

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

Deep Sequencing Analysis Reveals Distinctive Non-Coding RNAs When Comparing Tumor Multidrug-Resistant Cells and Extracellular Vesicles with Drug-Sensitive Counterparts

Differential expression of alpha-2,3-sialyltransferases and alpha-1,3/4-fucosyltransferases regulates the levels of sialyl Lewis a and sialyl Lewis x in gastrointestinal carcinoma cells.

Differential fragmentation patterns of pectin oligogalacturonides observed by nanoelectrospray quadrupole ion-trap mass spectrometry using automated spectra interpretation.

Discussion on common data analysis strategies used in MS-based proteomics.

Down-regulation of the strawberry Bet v 1-homologous allergen in concert with the flavonoid biosynthesis pathway in colorless strawberry mutant

Efficient transesterification of sucrose catalysed by the metalloprotease thermolysin in dimethylsulfoxide.

Erratum to: Methylation of the miR-126 gene associated with glioma progression.

Evening and morning alterations in Obstructive Sleep Apnea red blood cell proteome

Extra-cellular vesicles carry proteome of cancer hallmarks

Extracting monoisotopic single-charge peaks from liquid chromatography-electrospray ionization-mass spectrometry

Folding Status Is Determinant over Traffic-Competence in Defining CFTR Interactors in the Endoplasmic Reticulum.

Functional blockade of α5β1 integrin induces scattering and genomic landscape remodeling of hepatic progenitor cells.

Gains, losses and changes of function after gene duplication: study of the metallothionein family

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress

Glycation modulates glutamatergic signaling and exacerbates Parkinson’s disease-like phenotypes

Human spermatogenic failure purges deleterious mutation load from the autosomes and both sex chromosomes, including the gene DMRT1.

Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping

Identification of salt-tolerant Sinorhizobium sp. strain BL3 membrane proteins based on proteomics

Identification of species by multiplex analysis of variable-length sequences

IgG+ Extracellular Vesicles Measure Therapeutic Response in Advanced Pancreatic Cancer

Influence of Aldehyde Dehydrogenase Inhibition on Stemness of Endometrial Cancer Stem Cells

Integration of gel-based proteome data with pProRep.

Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs)

Integrative genomic signatures of hepatocellular carcinoma derived from nonalcoholic Fatty liver disease.

Interpretation of Tandem Mass Spectra of Posttranslationally Modified Peptides

Interpretation of collision-induced fragmentation tandem mass spectra of posttranslationally modified peptides

Interpretation of tandem mass spectra of posttranslationally modified peptides

Interpreting peptide mass spectra by VEMS.

Introduction to Mass Spectrometry-Based Proteomics

Introduction to omics.

Introduction to proteomics

Is the Proteome of Bronchoalveolar Lavage Extracellular Vesicles a Marker of Advanced Lung Cancer?

LAMP2A regulates the loading of proteins into exosomes

LC-MS Spectra Processing

LC-MS spectra processing.

Loss of the glycine N-methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice

MS-Based Biomarker Discovery in Bronchoalveolar Lavage Fluid for Lung Cancer

Methods and Algorithms for Quantitative Proteomics by Mass Spectrometry

Methods and algorithms for quantitative proteomics by mass spectrometry

Methods and algorithms for relative quantitative proteomics by mass spectrometry

Methylation of the miR-126 gene associated with glioma progression

New insights into functional regulation in MS-based drug profiling.

New insights into host-parasite ubiquitin proteome dynamics in P. falciparum infected red blood cells using a TUBEs-MS approach

Organization of proteomics data with YassDB.

Overview of proteomics studies in obstructive sleep apnea

Overview on techniques in cluster analysis.

PAnalyzer: a software tool for protein inference in shotgun proteomics.

Profiling of lung microbiota discloses differences in adenocarcinoma and squamous cell carcinoma

Proteomic Profiling of Plasma- and Gut-Derived Extracellular Vesicles in Obesity

Proteomics facing the combinatorial problem

Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach

Quantitation with virtual expert mass spectrometrist

Quantitative proteome analysis of an antibiotic resistant Escherichia coli exposed to tetracycline reveals multiple affected metabolic and peptidoglycan processes

Quantitative proteomic analysis of post-translational modifications of human histones

Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E

Red Blood Cells in Clinical Proteomics.

SIR: Deterministic protein inference from peptides assigned to MS data.

SNP-PHAGE: high-throughput SNP discovery pipeline.

Sequence handling by sequence analysis toolbox v1.0.

Shotgun mass spectrometry-based lipid profiling identifies and distinguishes between chronic inflammatory diseases

Solution to Dark Matter Identified by Mass-Tolerant Database Search

Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry

Strategies to Identify Recognition Signals and Targets of SUMOylation.