Lista de obras - Holger Daims - Dominio Público Uruguay

A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms

scientific article published on 19 June 2019

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.

artículo científico publicado en 2016

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

artículo científico publicado en 2010

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

scientific article published on 25 September 2019

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

artículo científico publicado en 2008

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

artículo científico publicado en 2017

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

artículo científico publicado en 2017

An automated Raman-based platform for the sorting of live cells by functional properties

scientific article published on 18 March 2019

Characterization of the First " Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

artículo científico publicado en 2018

Co-localized or randomly distributed? Pair cross correlation of in vivo grown subgingival biofilm bacteria quantified by digital image analysis

artículo científico publicado en 2012

Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase

artículo científico publicado en 2006

Colonization of freshwater biofilms by nitrifying bacteria from activated sludge

artículo científico publicado en 2013

Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation

artículo científico publicado en 2014

Complete nitrification by Nitrospira bacteria

artículo científico publicado en 2015

Crenothrix are major methane consumers in stratified lakes

artículo científico publicado en 2017

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

artículo científico publicado en 2018

Cyanate as an energy source for nitrifiers

artículo científico publicado en 2015

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

artículo científico publicado en 2006

Depletion of unwanted nucleic acid templates by selective cleavage: LNAzymes, catalytically active oligonucleotides containing locked nucleic acids, open a new window for detecting rare microbial community members

artículo científico publicado en 2012

Dimeric chlorite dismutase from the nitrogen-fixing cyanobacterium Cyanothece sp. PCC7425

artículo científico publicado en 2015

Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) improves signal intensity and increases rRNA accessibility

artículo científico publicado en 2009

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

artículo científico publicado en 2018

Drivers of bacterial colonization patterns in stream biofilms

artículo científico publicado en 2010

Ecophysiology and niche differentiation of Nitrospira-like bacteria, the key nitrite oxidizers in wastewater treatment plants

article

Enrichment and genome sequence of the group I.1a ammonia-oxidizing Archaeon "Ca. Nitrosotenuis uzonensis" representing a clade globally distributed in thermal habitats

artículo científico publicado en 2013

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.

artículo científico publicado en 2008

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

artículo científico publicado en 2015

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

scientific article published on 24 July 2020

Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes

artículo científico publicado en 2003

Functionally relevant diversity of closely related Nitrospira in activated sludge.

artículo científico publicado en 2014

Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting

artículo científico publicado en 2020

Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. ⬇️

artículo científico publicado en 2016

Giant viruses with an expanded complement of translation system components

artículo científico publicado en 2017

Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation

artículo científico publicado en 2014

Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases

artículo científico publicado en 2012

Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages.

artículo científico publicado en 2014

In situ techniques and digital image analysis methods for quantifying spatial localization patterns of nitrifiers and other microorganisms in biofilm and flocs

artículo científico publicado en 2011

Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring.

artículo científico publicado en 2010

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle.

artículo científico publicado en 2017

Linking Microbial and Ecosystem Ecology Using Ecological Stoichiometry: A Synthesis of Conceptual and Empirical Approaches

article published in 2010

Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays

artículo científico publicado en 2005

Low yield and abiotic origin of NO formed by the complete nitrifier Nitrospira inopinata

scientific article published on 23 April 2019

Manipulating Conserved Heme Cavity Residues of Chlorite Dismutase: Effect on Structure, Redox Chemistry, and Reactivity

artículo científico publicado en 2014

Microbial community composition and function in wastewater treatment plants

artículo científico publicado en 2002

Microbial landscapes: new paths to biofilm research.

artículo científico publicado en 2007

NH4+ ad-/desorption in sequencing batch reactors: simulation, laboratory and full-scale studies

artículo científico publicado en 2008

New Methods for Analysis of Spatial Distribution and Coaggregation of Microbial Populations in Complex Biofilms ⬇️

artículo científico publicado el 26 de julio de 2013

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

artículo científico publicado en 2012

Nitrification in terrestrial hot springs of Iceland and Kamchatka

artículo científico publicado en 2008

Nitrite concentration influences the population structure of Nitrospira-like bacteria

artículo científico publicado en 2006

Nitrogen processing and the role of epilithic biofilms downstream of a wastewater treatment plant

article

Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi

artículo científico publicado en 2014

Nitrospira

artículo científico publicado en 2018

Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants

artículo científico publicado en 2014

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.

artículo científico publicado en 2013

Physiological and phylogenetic characterization of a novel lithoautotrophic nitrite-oxidizing bacterium, 'Candidatus Nitrospira bockiana'.

artículo científico publicado en 2008

Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

artículo científico publicado en 2008

Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis

artículo científico publicado en 2007

Redox thermodynamics of high-spin and low-spin forms of chlorite dismutases with diverse subunit and oligomeric structures

artículo científico publicado en 2012

Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH.

artículo científico publicado en 2016

Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge

artículo científico publicado en 2006

Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization

artículo científico publicado en 2014

Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii": identification of a catalytically important amino acid residue

artículo científico publicado en 2010

Structure and Community Composition of Sprout-Like Bacterial Aggregates in a Dinaric Karst Subterranean Stream ⬇️

artículo científico publicado el 13 de enero de 2013

Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes

artículo científico publicado en 2015

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

artículo científico publicado en 2011

The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer

artículo científico publicado en 2013

The draft genome sequence of “Nitrospira lenta” strain BS10, a nitrite oxidizing bacterium isolated from activated sludge

scientific article published on 22 November 2018

Thermophilic biological nitrogen removal in industrial wastewater treatment.

artículo científico publicado en 2013

Three-dimensional stratification of bacterial biofilm populations in a moving bed biofilm reactor for nitritation-anammox

scientific article published on 29 January 2014

Unexpected Diversity of Chlorite Dismutases: a Catalytically Efficient Dimeric Enzyme from Nitrobacter winogradskyi

artículo científico publicado en 2011

Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community

artículo científico publicado en 2004

Wastewater treatment: a model system for microbial ecology

artículo científico publicado en 2006

daime, a novel image analysis program for microbial ecology and biofilm research

artículo científico publicado en 2006

Lista de obras de Holger Daims

A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

An automated Raman-based platform for the sorting of live cells by functional properties

Characterization of the First " Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

Co-localized or randomly distributed? Pair cross correlation of in vivo grown subgingival biofilm bacteria quantified by digital image analysis

Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase

Colonization of freshwater biofilms by nitrifying bacteria from activated sludge

Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation

Complete nitrification by Nitrospira bacteria

Crenothrix are major methane consumers in stratified lakes

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

Cyanate as an energy source for nitrifiers

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

Depletion of unwanted nucleic acid templates by selective cleavage: LNAzymes, catalytically active oligonucleotides containing locked nucleic acids, open a new window for detecting rare microbial community members

Dimeric chlorite dismutase from the nitrogen-fixing cyanobacterium Cyanothece sp. PCC7425

Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) improves signal intensity and increases rRNA accessibility

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

Drivers of bacterial colonization patterns in stream biofilms

Ecophysiology and niche differentiation of Nitrospira-like bacteria, the key nitrite oxidizers in wastewater treatment plants

Enrichment and genome sequence of the group I.1a ammonia-oxidizing Archaeon "Ca. Nitrosotenuis uzonensis" representing a clade globally distributed in thermal habitats

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes

Functionally relevant diversity of closely related Nitrospira in activated sludge.

Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting

Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. ⬇️

Giant viruses with an expanded complement of translation system components

Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation

Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases

Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages.

In situ techniques and digital image analysis methods for quantifying spatial localization patterns of nitrifiers and other microorganisms in biofilm and flocs

Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring.

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle.

Linking Microbial and Ecosystem Ecology Using Ecological Stoichiometry: A Synthesis of Conceptual and Empirical Approaches

Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays

Low yield and abiotic origin of NO formed by the complete nitrifier Nitrospira inopinata

Manipulating Conserved Heme Cavity Residues of Chlorite Dismutase: Effect on Structure, Redox Chemistry, and Reactivity

Microbial community composition and function in wastewater treatment plants

Microbial landscapes: new paths to biofilm research.

NH4+ ad-/desorption in sequencing batch reactors: simulation, laboratory and full-scale studies

New Methods for Analysis of Spatial Distribution and Coaggregation of Microbial Populations in Complex Biofilms ⬇️

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

Nitrification in terrestrial hot springs of Iceland and Kamchatka

Nitrite concentration influences the population structure of Nitrospira-like bacteria

Nitrogen processing and the role of epilithic biofilms downstream of a wastewater treatment plant

Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi

Nitrospira

Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.

Physiological and phylogenetic characterization of a novel lithoautotrophic nitrite-oxidizing bacterium, 'Candidatus Nitrospira bockiana'.

Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis

Redox thermodynamics of high-spin and low-spin forms of chlorite dismutases with diverse subunit and oligomeric structures

Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH.

Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge

Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization

Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii": identification of a catalytically important amino acid residue

Structure and Community Composition of Sprout-Like Bacterial Aggregates in a Dinaric Karst Subterranean Stream ⬇️

Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer

The draft genome sequence of “Nitrospira lenta” strain BS10, a nitrite oxidizing bacterium isolated from activated sludge

Thermophilic biological nitrogen removal in industrial wastewater treatment.

Three-dimensional stratification of bacterial biofilm populations in a moving bed biofilm reactor for nitritation-anammox

Unexpected Diversity of Chlorite Dismutases: a Catalytically Efficient Dimeric Enzyme from Nitrobacter winogradskyi

Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community

Wastewater treatment: a model system for microbial ecology

daime, a novel image analysis program for microbial ecology and biofilm research