Lista de obras - Tongye Shen - Dominio Público Uruguay

A coarse-grained model for synergistic action of multiple enzymes on cellulose

artículo científico publicado en 2012

A proposed signaling motif for nuclear import in mRNA processing via the formation of arginine claw

artículo científico publicado en 2007

A statistical analysis of the precision of reweighting-based simulations

artículo científico publicado en 2008

Appreciating HIV type 1 diversity: subtype differences in Env.

artículo científico publicado en 2009

Brownian dynamics simulation of helix-capping motifs.

artículo científico publicado en 2003

Brownian dynamics simulation of peptides with the University of Houston Brownian Dynamics (UHBD) program

artículo científico publicado en 2015

CAMERRA: An analysis tool for the computation of conformational dynamics by evaluating residue-residue associations

artículo científico publicado en 2018

Changes in flexibility upon binding: Application of the self-consistent pair contact probability method to protein-protein interactions

Characterizing protein conformations by correlation analysis of coarse-grained contact matrices

artículo científico publicado en 2018

Characterizing the 3D structure and dynamics of chromosomes and proteins in a common contact matrix framework

artículo científico publicado en 2018

Conformational flexibility of soluble cellulose oligomers: chain length and temperature dependence

artículo científico publicado en 2009

Conformational switching upon phosphorylation: a predictive framework based on energy landscape principles.

artículo científico publicado en 2008

DMSO enhanced conformational switch of an interfacial enzyme

artículo científico publicado en 2016

Effector-Binding-Directed Dimerization and Dynamic Communication between Allosteric Sites of Ribonucleotide Reductase

scientific article published on 08 January 2019

Effects of Branched O-Glycosylation on a Semiflexible Peptide Linker

artículo científico publicado en 2014

Elasticity of peptide omega bonds

artículo científico publicado en 2006

Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin

artículo científico publicado en 2007

Gated binding of ligands to HIV-1 protease: Brownian dynamics simulations in a coarse-grained model

artículo científico publicado en 2006

High-pressure effect on the dynamics of solvated peptides

artículo científico publicado en 2012

In silico studies of crystalline cellulose and its degradation by enzymes

artículo científico publicado en 2010

Insight into the role of hydration on protein dynamics.

artículo científico publicado en 2006

Investigation of Carbohydrate Recognition via Computer Simulation

artículo científico publicado en 2015

Mapping allostery through computational glycine scanning and correlation analysis of residue-residue contacts

artículo científico publicado en 2015

Molecular dynamics of acetylcholinesterase

artículo científico publicado en 2002

Nonequilibrium self-assembly of linear fibers: microscopic treatment of growth, decay, catastrophe and rescue

artículo científico publicado en 2006

Nonequilibrium statistical mechanical models for cytoskeletal assembly: towards understanding tensegrity in cells

artículo científico publicado en 2005

Nucleation dynamics of active particles

artículo científico publicado en 2013

Phenotypic variability of growing cellular populations

artículo científico publicado en 2007

Phi-value analysis of apo-azurin folding: comparison between experiment and theory

artículo científico publicado en 2006

Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: accelerated molecular dynamics analysis

artículo científico publicado en 2005

Pressure-induced conformational switch of an interfacial protein

artículo científico publicado en 2016

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

artículo científico publicado en 2011

Regulatory Mechanics of Constitutive Androstane Receptors: Basal and Ligand-Directed Actions

artículo científico publicado en 2019

Relating kinetic rates and local energetic roughness by accelerated molecular-dynamics simulations.

artículo científico publicado en 2005

Scanning malleable transition state ensembles: comparing theory and experiment for folding protein U1A.

artículo científico publicado en 2005

Solvent-dependent gating motions of an extremophilic lipase from Pseudomonas aeruginosa

artículo científico publicado en 2012

Solvent-induced α- to 3(10)-helix transition of an amphiphilic peptide

artículo científico publicado en 2013

Stability and Sugar Recognition Ability of Ricin-like Carbohydrate Binding Domains

artículo científico publicado en 2011

Stability and dynamics of crystals and glasses of motorized particles

artículo científico publicado en 2004

Subtype-specific conservation of isoleucine 309 in the envelope V3 domain is linked to immune evasion in subtype C HIV-1 infection

artículo científico publicado en 2010

Swimming motility plays a key role in the stochastic dynamics of cell clumping

artículo científico publicado en 2013

Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery

artículo científico publicado en 2005

The Promiscuity of Allosteric Regulation of Nuclear Receptors by Retinoid X Receptor

artículo científico publicado en 2016

The folding energy landscape and phosphorylation: modeling the conformational switch of the NFAT regulatory domain

artículo científico publicado en 2005

The interplay of nonlinearity and architecture in equilibrium cytoskeletal mechanics.

artículo científico publicado en 2011

The stability of cellulose: a statistical perspective from a coarse-grained model of hydrogen-bond networks

scientific article (publication date: 22 April 2009)

Transfer matrix approach to the hydrogen-bonding in cellulose Iα fibrils describes the recalcitrance to thermal deconstruction

artículo científico publicado en 2011

Unfolding proteins under external forces: a solvable model under the self-consistent pair contact probability approximation

artículo científico publicado en 2002

Using contact statistics to characterize structure transformation of biopolymer ensembles

artículo científico publicado en 2020

Variationally determined free energy profiles for structural models of proteins: characteristic temperatures for folding and trapping

artículo científico publicado en 2008

Water’s Contribution to the Energetic Roughness from Peptide Dynamics

artículo científico publicado en 2010

Lista de obras de Tongye Shen

A coarse-grained model for synergistic action of multiple enzymes on cellulose

A proposed signaling motif for nuclear import in mRNA processing via the formation of arginine claw

A statistical analysis of the precision of reweighting-based simulations

Appreciating HIV type 1 diversity: subtype differences in Env.

Brownian dynamics simulation of helix-capping motifs.

Brownian dynamics simulation of peptides with the University of Houston Brownian Dynamics (UHBD) program

CAMERRA: An analysis tool for the computation of conformational dynamics by evaluating residue-residue associations

Changes in flexibility upon binding: Application of the self-consistent pair contact probability method to protein-protein interactions

Characterizing protein conformations by correlation analysis of coarse-grained contact matrices

Characterizing the 3D structure and dynamics of chromosomes and proteins in a common contact matrix framework

Conformational flexibility of soluble cellulose oligomers: chain length and temperature dependence

Conformational switching upon phosphorylation: a predictive framework based on energy landscape principles.

DMSO enhanced conformational switch of an interfacial enzyme

Effector-Binding-Directed Dimerization and Dynamic Communication between Allosteric Sites of Ribonucleotide Reductase

Effects of Branched O-Glycosylation on a Semiflexible Peptide Linker

Elasticity of peptide omega bonds

Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin

Gated binding of ligands to HIV-1 protease: Brownian dynamics simulations in a coarse-grained model

High-pressure effect on the dynamics of solvated peptides

In silico studies of crystalline cellulose and its degradation by enzymes

Insight into the role of hydration on protein dynamics.

Investigation of Carbohydrate Recognition via Computer Simulation

Mapping allostery through computational glycine scanning and correlation analysis of residue-residue contacts

Molecular dynamics of acetylcholinesterase

Nonequilibrium self-assembly of linear fibers: microscopic treatment of growth, decay, catastrophe and rescue

Nonequilibrium statistical mechanical models for cytoskeletal assembly: towards understanding tensegrity in cells

Nucleation dynamics of active particles

Phenotypic variability of growing cellular populations

Phi-value analysis of apo-azurin folding: comparison between experiment and theory

Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: accelerated molecular dynamics analysis

Pressure-induced conformational switch of an interfacial protein

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

Regulatory Mechanics of Constitutive Androstane Receptors: Basal and Ligand-Directed Actions

Relating kinetic rates and local energetic roughness by accelerated molecular-dynamics simulations.

Scanning malleable transition state ensembles: comparing theory and experiment for folding protein U1A.

Solvent-dependent gating motions of an extremophilic lipase from Pseudomonas aeruginosa

Solvent-induced α- to 3(10)-helix transition of an amphiphilic peptide

Stability and Sugar Recognition Ability of Ricin-like Carbohydrate Binding Domains

Stability and dynamics of crystals and glasses of motorized particles

Subtype-specific conservation of isoleucine 309 in the envelope V3 domain is linked to immune evasion in subtype C HIV-1 infection

Swimming motility plays a key role in the stochastic dynamics of cell clumping

Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery

The Promiscuity of Allosteric Regulation of Nuclear Receptors by Retinoid X Receptor

The folding energy landscape and phosphorylation: modeling the conformational switch of the NFAT regulatory domain

The interplay of nonlinearity and architecture in equilibrium cytoskeletal mechanics.

The stability of cellulose: a statistical perspective from a coarse-grained model of hydrogen-bond networks

Transfer matrix approach to the hydrogen-bonding in cellulose Iα fibrils describes the recalcitrance to thermal deconstruction

Unfolding proteins under external forces: a solvable model under the self-consistent pair contact probability approximation

Using contact statistics to characterize structure transformation of biopolymer ensembles

Variationally determined free energy profiles for structural models of proteins: characteristic temperatures for folding and trapping

Water’s Contribution to the Energetic Roughness from Peptide Dynamics