Lista de obras - Sameer Velankar - Dominio Público Uruguay

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

scientific article published in 2022

A structural biology community assessment of AlphaFold2 applications

artículo científico publicado en 2022

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

scientific article published on 08 April 2019

Automatic annotation of protein residues in published papers

scientific article published on 05 November 2019

BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management

artículo científico publicado en 2020

BioJS: an open source JavaScript framework for biological data visualization

artículo científico publicado en 2013

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

artículo científico publicado en 2013

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

artículo científico publicado en 1999

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

artículo científico publicado en 2024

E-MSD: an integrated data resource for bioinformatics

artículo científico publicado en 2005

E-MSD: an integrated data resource for bioinformatics.

artículo científico publicado en 2004

E-MSD: improving data deposition and structure quality

artículo científico publicado en 2006

E-MSD: the European Bioinformatics Institute Macromolecular Structure Database

artículo científico publicado en 2003

EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023

artículo científico publicado en 2023

EMDataBank.org: unified data resource for CryoEM

artículo científico publicado en 2011

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

artículo científico publicado en 2019

Finding enzyme cofactors in Protein Data Bank

artículo científico publicado en 2019

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

artículo científico publicado en 2013

Genome3D: exploiting structure to help users understand their sequences

artículo científico publicado en 2015

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

artículo científico publicado en 2020

High-performance macromolecular data delivery and visualization for the web

artículo científico publicado en 2020

High-performance macromolecular data delivery and visualization for the web. Corrigendum

artículo científico publicado en 2021

Highly accurate protein structure prediction for the human proteome

Implementing an X-ray validation pipeline for the Protein Data Bank

artículo científico publicado en 2012

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

artículo científico publicado en 2017

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition

artículo científico publicado en 2016

Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition

artículo científico publicado en 2019

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

artículo científico publicado en 2015

New restraints and validation approaches for nucleic acid structures in <i>PDB-REDO</i>

scientific article published in 2021

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

artículo científico publicado en 2017

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

artículo científico publicado en 2015

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

artículo científico publicado en 2016

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank

artículo científico publicado en 2024

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models

artículo científico publicado en 2017

PDBe: Protein Data Bank in Europe

artículo científico publicado en 2013

PDBe: Protein Data Bank in Europe

artículo científico publicado en 2010

PDBe: Protein Data Bank in Europe

artículo científico publicado en 2011

PDBe: Protein Data Bank in Europe

article

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

artículo científico publicado en 2015

PDBe: improved findability of macromolecular structure data in the PDB

artículo científico publicado en 2020

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

artículo científico publicado en 2017

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

artículo científico publicado en 2021

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

artículo científico publicado en 2011

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources

artículo científico publicado en 2016

Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features

artículo científico publicado en 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

artículo científico publicado en 2016

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

artículo científico publicado en 2017

Remediation of the protein data bank archive

artículo científico publicado en 2008

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

artículo científico publicado en 2013

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

artículo científico publicado en 2019

SOAP-based services provided by the European Bioinformatics Institute

artículo científico publicado en 2005

Straightforward and complete deposition of NMR data to the PDBe

artículo científico publicado en 2010

Structural biology data archiving - where we are and what lies ahead

scholarly article by Gerard Kleywegt published in June 2018

Structural biology: The transformational era

artículo científico publicado en 2023

The <i>CCP</i>4 suite: integrative software for macromolecular crystallography

scientific article published in 2023

The EBI enzyme portal

artículo científico publicado en 2012

The Protein Data Bank in Europe (PDBe): bringing structure to biology

artículo científico publicado en 2011

The archiving and dissemination of biological structure data

artículo científico publicado en 2016

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

artículo científico publicado en 2017

The complex portal--an encyclopaedia of macromolecular complexes

artículo científico publicado en 2014

The role of structural bioinformatics resources in the era of integrative structural biology

artículo científico publicado en 2013

Unconventional interactions between water and heterocyclic nitrogens in protein structures

artículo científico publicado en 2004

UniChem: a unified chemical structure cross-referencing and identifier tracking system

artículo científico publicado en 2013

Validation of Structures in the Protein Data Bank

artículo científico publicado en 2017

Validation of ligands in macromolecular structures determined by X-ray crystallography

artículo científico publicado en 2018

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

artículo científico publicado en 2018

Worldwide Protein Data Bank validation information: usage and trends

artículo científico publicado en 2018

Lista de obras de Sameer Velankar

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

A structural biology community assessment of AlphaFold2 applications

Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)

Automatic annotation of protein residues in published papers

BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management

BioJS: an open source JavaScript framework for biological data visualization

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

Dataset from a human-in-the-loop approach to identify functionally important protein residues from literature

E-MSD: an integrated data resource for bioinformatics

E-MSD: an integrated data resource for bioinformatics.

E-MSD: improving data deposition and structure quality

E-MSD: the European Bioinformatics Institute Macromolecular Structure Database

EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023

EMDataBank.org: unified data resource for CryoEM

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

Finding enzyme cofactors in Protein Data Bank

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

Genome3D: exploiting structure to help users understand their sequences

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

High-performance macromolecular data delivery and visualization for the web

High-performance macromolecular data delivery and visualization for the web. Corrigendum

Highly accurate protein structure prediction for the human proteome

Implementing an X-ray validation pipeline for the Protein Data Bank

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition

Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

New restraints and validation approaches for nucleic acid structures in <i>PDB-REDO</i>

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models

PDBe: Protein Data Bank in Europe

PDBe: Protein Data Bank in Europe

PDBe: Protein Data Bank in Europe

PDBe: Protein Data Bank in Europe

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

PDBe: improved findability of macromolecular structure data in the PDB

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources

Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive

Remediation of the protein data bank archive

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

SOAP-based services provided by the European Bioinformatics Institute

Straightforward and complete deposition of NMR data to the PDBe

Structural biology data archiving - where we are and what lies ahead

Structural biology: The transformational era

The <i>CCP</i>4 suite: integrative software for macromolecular crystallography

The EBI enzyme portal

The Protein Data Bank in Europe (PDBe): bringing structure to biology

The archiving and dissemination of biological structure data

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

The complex portal--an encyclopaedia of macromolecular complexes

The role of structural bioinformatics resources in the era of integrative structural biology

Unconventional interactions between water and heterocyclic nitrogens in protein structures

UniChem: a unified chemical structure cross-referencing and identifier tracking system

Validation of Structures in the Protein Data Bank

Validation of ligands in macromolecular structures determined by X-ray crystallography

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

Worldwide Protein Data Bank validation information: usage and trends