Lista de obras - Marco Fondi - Dominio Público Uruguay

A census of RND superfamily proteins in the Burkholderia genus

artículo científico publicado en 2013

A genomic and transcriptomic approach to investigate the blue pigment phenotype in Pseudomonas fluorescens.

artículo científico publicado en 2015

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

artículo científico publicado en 2009

A novel resistance mechanism to triclosan that suggests horizontal gene transfer and demonstrates a potential selective pressure for reduced biocide susceptibility in clinical strains of Staphylococcus aureus

artículo científico publicado en 2012

Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage.

artículo científico publicado en 2014

Antagonistic interactions between endophytic cultivable bacterial communities isolated from the medicinal plant Echinacea purpurea.

artículo científico publicado en 2015

Antibiotic resistance differentiates Echinacea purpurea endophytic bacterial communities with respect to plant organs

artículo científico publicado en 2014

Antimicrobial activity of Pseudoalteromonas strains isolated from the Ross Sea (Antarctica) versus Cystic Fibrosis opportunistic pathogens

scholarly article by Isabel Maida et al published 11 February 2015 in Hydrobiologia

Bioactive volatile organic compounds from Antarctic (sponges) bacteria

artículo científico publicado en 2013

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity

artículo científico publicado en 2016

Deciphering the role of RND efflux transporters in Burkholderia cenocepacia

artículo científico publicado en 2011

Defining orthologs and pangenome size metrics.

artículo científico publicado en 2015

Diauxie and co-utilization of carbon sources can coexist during bacterial growth in nutritionally complex environments

scientific article published on 19 June 2020

Diversity and Horizontal Transfer of Antarctic Pseudomonas spp. Plasmids

scientific article published on 28 October 2019

DprE1, a new taxonomic marker in mycobacteria

artículo científico publicado en 2013

Draft genome sequence of the volatile organic compound-producing Antarctic bacterium Arthrobacter sp. strain TB23, able to inhibit cystic fibrosis pathogens belonging to the Burkholderia cepacia complex

artículo científico publicado en 2012

Draft genomes of three Antarctic Psychrobacter strains producing antimicrobial compounds against Burkholderia cepacia complex, opportunistic human pathogens.

artículo científico publicado en 2014

Evolution of lactic acid bacteria in the order Lactobacillales as depicted by analysis of glycolysis and pentose phosphate pathways.

artículo científico publicado en 2013

Exploring the Anti-Burkholderia cepacia Complex Activity of Essential Oils: A Preliminary Analysis

artículo científico

Exploring the HME and HAE1 efflux systems in the genus Burkholderia

artículo científico publicado en 2010

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

artículo científico publicado en 2010

Eﬄux-mediated resistance to a benzothiadiazol derivative effective against Burkholderia cenocepacia

artículo científico publicado en 2015

Fast, Ungapped Reads Mapping Using Squid

artículo científico publicado en 2022

Functional Genomics of a Collection of Gammaproteobacteria Isolated from Antarctica

artículo científico publicado en 2024

Genome-Scale Metabolic Network Reconstruction

artículo científico publicado en 2015

Genome-scale metabolic reconstruction and constraint-based modelling of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125.

artículo científico publicado en 2014

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium

artículo científico publicado en 2020

Genome-scale phylogenetic and DNA composition analyses of Antarctic Pseudoalteromonas bacteria reveal inconsistencies in current taxonomic affiliation

article

Genomes analysis and bacteria identification: The use of overlapping genes as molecular markers

artículo científico publicado en 2015

Genomic analysis of three sponge-associated Arthrobacter Antarctic strains, inhibiting the growth of Burkholderia cepacia complex bacteria by synthesizing volatile organic compounds

artículo científico publicado en 2013

Genomic and phenotypic characterization of the species Acinetobacter venetianus

artículo científico

Identification of species of the Burkholderia cepacia complex by sequence analysis of the hisA gene.

artículo científico publicado en 2010

Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria

artículo científico publicado en 2023

Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks

article

Linking Bacterial Endophytic Communities to Essential Oils: Clues from Lavandula angustifolia Mill. ⬇️

artículo científico publicado en 2014

MeDuSa: a multi-draft based scaffolder.

artículo científico publicado en 2015

Mechanism of resistance to an antitubercular 2-thiopyridine derivative that is also active against Burkholderia cenocepacia

artículo científico publicado en 2014

Metabolic Modeling of Pectobacterium parmentieri SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic Bacteria

scientific article published on 05 April 2019

Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti.

artículo científico publicado en 2016

Methods for assembling reads and producing contigs.

artículo científico publicado en 2015

Modelling microbial metabolic rewiring during growth in a complex medium

artículo científico publicado en 2016

Modelling the Kinetic Response to Nutrient Fluctuations

artículo científico publicado en 2017

Molecular and phenotypic characterization of Acinetobacter strains able to degrade diesel fuel

artículo científico publicado en 2011

Multi -omics and metabolic modelling pipelines: challenges and tools for systems microbiology

artículo científico publicado en 2015

Origin and evolution of operons and metabolic pathways.

scientific article published on 22 May 2009

Origin, duplication and reshuffling of plasmid genes: Insights from Burkholderia vietnamiensis G4 genome

article

Phenotypic and genomic characterization of the Antarctic bacterium Gillisia sp. CAL575, a producer of antimicrobial compounds

artículo científico publicado en 2013

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti.

artículo científico publicado en 2018

Sponge-associated microbial Antarctic communities exhibiting antimicrobial activity against Burkholderia cepacia complex bacteria

artículo científico publicado en 2011

Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia

artículo científico publicado en 2009

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

artículo científico publicado en 2010

The first record of translocated white-clawed crayfish from the Austropotamobius pallipes complex in Sardinia (Italy)

article

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks

artículo científico publicado en 2010

The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis

artículo científico publicado en 2007

The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case

artículo científico publicado en 2007

Thiophenecarboxamide Derivatives Activated by EthA Kill Mycobacterium tuberculosis by Inhibiting the CTP Synthetase PyrG

artículo científico publicado en 2015

Tn-Core: A Toolbox for Integrating Tn-seq Gene Essentiality Data and Constraint-Based Metabolic Modeling

scientific article published on 27 December 2018

Lista de obras de Marco Fondi

A census of RND superfamily proteins in the Burkholderia genus

A genomic and transcriptomic approach to investigate the blue pigment phenotype in Pseudomonas fluorescens.

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

A novel resistance mechanism to triclosan that suggests horizontal gene transfer and demonstrates a potential selective pressure for reduced biocide susceptibility in clinical strains of Staphylococcus aureus

Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage.

Antagonistic interactions between endophytic cultivable bacterial communities isolated from the medicinal plant Echinacea purpurea.

Antibiotic resistance differentiates Echinacea purpurea endophytic bacterial communities with respect to plant organs

Antimicrobial activity of Pseudoalteromonas strains isolated from the Ross Sea (Antarctica) versus Cystic Fibrosis opportunistic pathogens

Bioactive volatile organic compounds from Antarctic (sponges) bacteria

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity

Deciphering the role of RND efflux transporters in Burkholderia cenocepacia

Defining orthologs and pangenome size metrics.

Diauxie and co-utilization of carbon sources can coexist during bacterial growth in nutritionally complex environments

Diversity and Horizontal Transfer of Antarctic Pseudomonas spp. Plasmids

DprE1, a new taxonomic marker in mycobacteria

Draft genome sequence of the volatile organic compound-producing Antarctic bacterium Arthrobacter sp. strain TB23, able to inhibit cystic fibrosis pathogens belonging to the Burkholderia cepacia complex

Draft genomes of three Antarctic Psychrobacter strains producing antimicrobial compounds against Burkholderia cepacia complex, opportunistic human pathogens.

Evolution of lactic acid bacteria in the order Lactobacillales as depicted by analysis of glycolysis and pentose phosphate pathways.

Exploring the Anti-Burkholderia cepacia Complex Activity of Essential Oils: A Preliminary Analysis

Exploring the HME and HAE1 efflux systems in the genus Burkholderia

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

Eﬄux-mediated resistance to a benzothiadiazol derivative effective against Burkholderia cenocepacia

Fast, Ungapped Reads Mapping Using Squid

Functional Genomics of a Collection of Gammaproteobacteria Isolated from Antarctica

Genome-Scale Metabolic Network Reconstruction

Genome-scale metabolic reconstruction and constraint-based modelling of the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125.

Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacterium

Genome-scale phylogenetic and DNA composition analyses of Antarctic Pseudoalteromonas bacteria reveal inconsistencies in current taxonomic affiliation

Genomes analysis and bacteria identification: The use of overlapping genes as molecular markers

Genomic analysis of three sponge-associated Arthrobacter Antarctic strains, inhibiting the growth of Burkholderia cepacia complex bacteria by synthesizing volatile organic compounds

Genomic and phenotypic characterization of the species Acinetobacter venetianus

Identification of species of the Burkholderia cepacia complex by sequence analysis of the hisA gene.

Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria

Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks

Linking Bacterial Endophytic Communities to Essential Oils: Clues from Lavandula angustifolia Mill. ⬇️

MeDuSa: a multi-draft based scaffolder.

Mechanism of resistance to an antitubercular 2-thiopyridine derivative that is also active against Burkholderia cenocepacia

Metabolic Modeling of Pectobacterium parmentieri SCC3193 Provides Insights into Metabolic Pathways of Plant Pathogenic Bacteria

Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti.

Methods for assembling reads and producing contigs.

Modelling microbial metabolic rewiring during growth in a complex medium

Modelling the Kinetic Response to Nutrient Fluctuations

Molecular and phenotypic characterization of Acinetobacter strains able to degrade diesel fuel

Multi -omics and metabolic modelling pipelines: challenges and tools for systems microbiology

Origin and evolution of operons and metabolic pathways.

Origin, duplication and reshuffling of plasmid genes: Insights from Burkholderia vietnamiensis G4 genome

Phenotypic and genomic characterization of the Antarctic bacterium Gillisia sp. CAL575, a producer of antimicrobial compounds

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti.

Sponge-associated microbial Antarctic communities exhibiting antimicrobial activity against Burkholderia cepacia complex bacteria

Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

The first record of translocated white-clawed crayfish from the Austropotamobius pallipes complex in Sardinia (Italy)

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks

The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis

The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case

Thiophenecarboxamide Derivatives Activated by EthA Kill Mycobacterium tuberculosis by Inhibiting the CTP Synthetase PyrG

Tn-Core: A Toolbox for Integrating Tn-seq Gene Essentiality Data and Constraint-Based Metabolic Modeling