Lista de obras - Mario Ramirez - Dominio Público Uruguay

A Primer on Microbial Bioinformatics for non-bioinformaticians

artículo científico publicado en 2018

A widespread family of polymorphic toxins encoded by temperate phages.

artículo científico publicado en 2017

Adjusted Wallace coefficient as a measure of congruence between typing methods.

artículo científico publicado en 2011

Analysis of group B streptococcal isolates from infants and pregnant women in Portugal revealing two lineages with enhanced invasiveness. ⬇️

artículo científico publicado en 2007

Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype. ⬇️

artículo científico publicado en 2011

Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.

artículo científico publicado en 2007

Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.

artículo científico publicado en 2015

Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

artículo científico publicado en 2016

Capsular Transformation of a Multidrug‐ResistantStreptococcus pneumoniaeIn Vivo ⬇️

artículo científico publicado el 1 de marzo de 1998

Capsule impairs efficient adherence of Streptococcus agalactiae to intestinal epithelium in tilapias Oreochromis sp.

artículo científico publicado en 2016

Changes in Streptococcus pneumoniae serotypes causing invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine

artículo científico publicado en 2008

Changes in emm types and superantigen gene content of Streptococcus pyogenes causing invasive infections in Portugal

scientific article published on 02 December 2019

Changing epidemiology of group B streptococcal infections among adults in Iceland: 1975-2014.

artículo científico publicado en 2015

Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal

artículo científico publicado en 2005

Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012.

artículo científico publicado en 2017

Comparing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Phenotypic and Molecular Methods for Identification of Species within the Streptococcus anginosus Group.

artículo científico publicado en 2015

Comparison of alternative mixture model methods to analyze bacterial CGH experiments with multi-genome arrays.

artículo científico publicado en 2014

Conjugate vaccine serotypes persist as major causes of non-invasive pneumococcal pneumonia in Portugal despite declines in serotypes 3 and 19A (2012-2015)

artículo científico publicado en 2018

DNA methylase activity as a marker for the presence of a family of phage-like elements conferring efflux-mediated macrolide resistance in streptococci.

artículo científico publicado en 2006

Decrease in macrolide resistance and clonal instability among Streptococcus pyogenes in Portugal.

artículo científico publicado en 2008

Denmark14-230 clone as an increasing cause of pneumococcal infection in Portugal within a background of diverse serotype 19A lineages.

artículo científico publicado en 2009

Distribution of pilus islands in Streptococcus agalactiae that cause human infections: insights into evolution and implication for vaccine development

artículo científico publicado en 2012

Dominance of vaccine serotypes in pediatric invasive pneumococcal infections in Portugal (2012-2015)

artículo científico publicado en 2019

Emergence of optochin resistance among Streptococcus pneumoniae in Portugal.

artículo científico publicado en 2006

Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions.

artículo científico publicado en 2015

Epidemiological survey of the first case of vancomycin-resistant Staphylococcus aureus infection in Europe

artículo científico publicado en 2014

Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures

artículo científico publicado en 2011

Expanding the diagnosis of pediatric bacteremic pneumococcal pneumonia from blood cultures to molecular methods: advantages and caveats.

artículo científico publicado en 2010

Export of the pneumococcal phage SV1 lysin requires choline‐containing teichoic acids and is holin‐independent ⬇️

artículo científico publicado el 11 de diciembre de 2012

First case of infection with vancomycin-resistant Staphylococcus aureus in Europe

scientific article published on 21 June 2013

Fluoroquinolone resistance in Streptococcus dysgalactiae subsp. equisimilis and evidence for a shared global gene pool with Streptococcus pyogenes.

artículo científico publicado en 2010

Genomic analysis reveals the molecular basis for capsule loss in the group B Streptococcus population

artículo científico publicado en 2015

Group B streptococci causing neonatal infections in barcelona are a stable clonal population: 18-year surveillance.

artículo científico publicado en 2011

Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany

artículo científico publicado en 2020

Heterogeneity of pneumococcal phase variants in invasive human infections.

artículo científico publicado en 2006

Identification of immunoreactive extracellular proteins of Streptococcus agalactiae in bovine mastitis

artículo científico publicado en 2008

Identification of macrolide-resistant clones of Streptococcus pyogenes in Portugal

artículo científico publicado en 2006

Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

artículo científico publicado en 2006

Increasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015

article

Induction of prophages by fluoroquinolones in Streptococcus pneumoniae: implications for emergence of resistance in genetically-related clones

artículo científico publicado en 2014

Invasive Streptococcus pneumoniae from Portugal: implications for vaccination and antimicrobial therapy

artículo científico publicado en 2004

Macrolide-resistant Streptococcus pyogenes: prevalence and treatment strategies.

artículo científico publicado en 2015

Molecular Characterization of the Complete 23F Capsular Polysaccharide Locus of Streptococcus pneumoniae ⬇️

artículo científico publicado el 1 de octubre de 1998

Molecular Epidemiology of Penicillin-Resistant Streptococcus pneumoniae Isolates Recovered in Italy from 1993 to 1996 ⬇️

artículo científico publicado el 1 de octubre de 1998

Non-invasive pneumococcal pneumonia in Portugal--serotype distribution and antimicrobial resistance

artículo científico publicado en 2014

Nonoutbreak surveillance of group A streptococci causing invasive disease in Portugal identified internationally disseminated clones among members of a genetically heterogeneous population

artículo científico publicado en 2007

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

artículo científico publicado en 2015

PCR based differentiation between Streptococcus dysgalactiae subsp. equisimilis strains isolated from humans and horses.

artículo científico publicado en 2014

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

artículo científico publicado en 2016

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

artículo científico publicado en 2016

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

artículo científico publicado en 2012

Pediatric Complicated Pneumonia Caused by Streptococcus pneumoniae Serotype 3 in 13-Valent Pneumococcal Conjugate Vaccinees, Portugal, 2010-2015

artículo científico publicado en 2018

Pherotype influences biofilm growth and recombination in Streptococcus pneumoniae

artículo científico publicado en 2014

Pherotypes are driving genetic differentiation within Streptococcus pneumoniae.

artículo científico publicado en 2009

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

artículo científico publicado en 2019

Population Structure of Streptococcus pneumoniae Causing Invasive Disease in Adults in Portugal before PCV13 Availability for Adults: 2008-2011.

artículo científico publicado en 2016

Prophage spontaneous activation promotes DNA release enhancing biofilm formation in Streptococcus pneumoniae

artículo científico publicado en 2010

Rapid inversion of the prevalences of macrolide resistance phenotypes paralleled by a diversification of T and emm types among Streptococcus pyogenes in Portugal

artículo científico publicado en 2005

Reevaluating the serotype II capsular locus of Streptococcus agalactiae

artículo científico publicado en 2007

Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC.

artículo científico publicado en 2014

Serotype 3 Remains the Leading Cause of Invasive Pneumococcal Disease in Adults in Portugal (2012-2014) Despite Continued Reductions in Other 13-Valent Conjugate Vaccine Serotypes

artículo científico publicado en 2016

Serotype discrimination of encapsulated Streptococcus pneumoniae strains by Fourier-transform infrared spectroscopy and chemometrics.

artículo científico publicado en 2013

Serotypes 1, 7F and 19A became the leading causes of pediatric invasive pneumococcal infections in Portugal after 7 years of heptavalent conjugate vaccine use.

artículo científico publicado en 2010

Streptococcus agalactiae in a large Portuguese teaching hospital: antimicrobial susceptibility, serotype distribution, and clonal analysis of macrolide-resistant isolates

artículo científico publicado en 2004

Streptococcus agalactiae serotype Ib as an agent of meningitis in two adult nonpregnant women

artículo científico publicado en 2007

Superantigen gene complement of Streptococcus pyogenes--relationship with other typing methods and short-term stability

artículo científico publicado en 2012

The autolysin LytA contributes to efficient bacteriophage progeny release in Streptococcus pneumoniae

artículo científico publicado en 2009

The presence of the pilus locus is a clonal property among pneumococcal invasive isolates. ⬇️

artículo científico publicado en 2008

Use of the 13-valent conjugate vaccine has the potential to eliminate pilus carrying isolates as causes of invasive pneumococcal disease

artículo científico publicado en 2012

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.

artículo científico publicado en 2018

miR-363-5p regulates endothelial cell properties and their communication with hematopoietic precursor cells

artículo científico publicado en 2013

serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction

artículo científico publicado en 2019

Lista de obras de Mario Ramirez

A Primer on Microbial Bioinformatics for non-bioinformaticians

A widespread family of polymorphic toxins encoded by temperate phages.

Adjusted Wallace coefficient as a measure of congruence between typing methods.

Analysis of group B streptococcal isolates from infants and pregnant women in Portugal revealing two lineages with enhanced invasiveness. ⬇️

Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype. ⬇️

Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.

Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.

Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxon

Capsular Transformation of a Multidrug‐ResistantStreptococcus pneumoniaeIn Vivo ⬇️

Capsule impairs efficient adherence of Streptococcus agalactiae to intestinal epithelium in tilapias Oreochromis sp.

Changes in Streptococcus pneumoniae serotypes causing invasive disease with non-universal vaccination coverage of the seven-valent conjugate vaccine

Changes in emm types and superantigen gene content of Streptococcus pyogenes causing invasive infections in Portugal

Changing epidemiology of group B streptococcal infections among adults in Iceland: 1975-2014.

Characterization of the genetic lineages responsible for pneumococcal invasive disease in Portugal

Clonal and serotype dynamics of serogroup 6 isolates causing invasive pneumococcal disease in Portugal: 1999-2012.

Comparing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Phenotypic and Molecular Methods for Identification of Species within the Streptococcus anginosus Group.

Comparison of alternative mixture model methods to analyze bacterial CGH experiments with multi-genome arrays.

Conjugate vaccine serotypes persist as major causes of non-invasive pneumococcal pneumonia in Portugal despite declines in serotypes 3 and 19A (2012-2015)

DNA methylase activity as a marker for the presence of a family of phage-like elements conferring efflux-mediated macrolide resistance in streptococci.

Decrease in macrolide resistance and clonal instability among Streptococcus pyogenes in Portugal.

Denmark14-230 clone as an increasing cause of pneumococcal infection in Portugal within a background of diverse serotype 19A lineages.

Distribution of pilus islands in Streptococcus agalactiae that cause human infections: insights into evolution and implication for vaccine development

Dominance of vaccine serotypes in pediatric invasive pneumococcal infections in Portugal (2012-2015)

Emergence of optochin resistance among Streptococcus pneumoniae in Portugal.

Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions.

Epidemiological survey of the first case of vancomycin-resistant Staphylococcus aureus infection in Europe

Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures

Expanding the diagnosis of pediatric bacteremic pneumococcal pneumonia from blood cultures to molecular methods: advantages and caveats.

Export of the pneumococcal phage SV1 lysin requires choline‐containing teichoic acids and is holin‐independent ⬇️

First case of infection with vancomycin-resistant Staphylococcus aureus in Europe

Fluoroquinolone resistance in Streptococcus dysgalactiae subsp. equisimilis and evidence for a shared global gene pool with Streptococcus pyogenes.

Genomic analysis reveals the molecular basis for capsule loss in the group B Streptococcus population

Group B streptococci causing neonatal infections in barcelona are a stable clonal population: 18-year surveillance.

Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany

Heterogeneity of pneumococcal phase variants in invasive human infections.

Identification of immunoreactive extracellular proteins of Streptococcus agalactiae in bovine mastitis

Identification of macrolide-resistant clones of Streptococcus pyogenes in Portugal

Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.

Increasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015

Induction of prophages by fluoroquinolones in Streptococcus pneumoniae: implications for emergence of resistance in genetically-related clones

Invasive Streptococcus pneumoniae from Portugal: implications for vaccination and antimicrobial therapy

Macrolide-resistant Streptococcus pyogenes: prevalence and treatment strategies.

Molecular Characterization of the Complete 23F Capsular Polysaccharide Locus of Streptococcus pneumoniae ⬇️

Molecular Epidemiology of Penicillin-Resistant Streptococcus pneumoniae Isolates Recovered in Italy from 1993 to 1996 ⬇️

Non-invasive pneumococcal pneumonia in Portugal--serotype distribution and antimicrobial resistance

Nonoutbreak surveillance of group A streptococci causing invasive disease in Portugal identified internationally disseminated clones among members of a genetically heterogeneous population

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis

PCR based differentiation between Streptococcus dysgalactiae subsp. equisimilis strains isolated from humans and horses.

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Pediatric Complicated Pneumonia Caused by Streptococcus pneumoniae Serotype 3 in 13-Valent Pneumococcal Conjugate Vaccinees, Portugal, 2010-2015

Pherotype influences biofilm growth and recombination in Streptococcus pneumoniae

Pherotypes are driving genetic differentiation within Streptococcus pneumoniae.

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

Population Structure of Streptococcus pneumoniae Causing Invasive Disease in Adults in Portugal before PCV13 Availability for Adults: 2008-2011.

Prophage spontaneous activation promotes DNA release enhancing biofilm formation in Streptococcus pneumoniae

Rapid inversion of the prevalences of macrolide resistance phenotypes paralleled by a diversification of T and emm types among Streptococcus pyogenes in Portugal

Reevaluating the serotype II capsular locus of Streptococcus agalactiae

Scarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC.

Serotype 3 Remains the Leading Cause of Invasive Pneumococcal Disease in Adults in Portugal (2012-2014) Despite Continued Reductions in Other 13-Valent Conjugate Vaccine Serotypes

Serotype discrimination of encapsulated Streptococcus pneumoniae strains by Fourier-transform infrared spectroscopy and chemometrics.

Serotypes 1, 7F and 19A became the leading causes of pediatric invasive pneumococcal infections in Portugal after 7 years of heptavalent conjugate vaccine use.

Streptococcus agalactiae in a large Portuguese teaching hospital: antimicrobial susceptibility, serotype distribution, and clonal analysis of macrolide-resistant isolates

Streptococcus agalactiae serotype Ib as an agent of meningitis in two adult nonpregnant women

Superantigen gene complement of Streptococcus pyogenes--relationship with other typing methods and short-term stability

The autolysin LytA contributes to efficient bacteriophage progeny release in Streptococcus pneumoniae

The presence of the pilus locus is a clonal property among pneumococcal invasive isolates. ⬇️

Use of the 13-valent conjugate vaccine has the potential to eliminate pilus carrying isolates as causes of invasive pneumococcal disease

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification.

miR-363-5p regulates endothelial cell properties and their communication with hematopoietic precursor cells

serotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introduction