Lista de obras - Bohdan Schneider - Dominio Público Uruguay

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle.

artículo científico publicado en 2017

A DNA structural alphabet provides new insight into DNA flexibility

artículo científico publicado en 2018

A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank

artículo científico publicado en 2006

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

scientific article published on 22 April 2020

A short survey on protein blocks.

artículo científico publicado en 2010

A systematic method for studying the spatial distribution of water molecules around nucleic acid bases

artículo científico publicado en 1993

A unified dinucleotide alphabet describing both RNA and DNA structures

scientific article published on 14 May 2020

Automatic workflow for the classification of local DNA conformations

artículo científico publicado en 2013

Bioinformatic analysis of the protein/DNA interface.

scientific article published on 11 December 2013

Building of RNA and DNA double helices into electron density

scientific article published on 14 May 2008

Calculating the response of NMR shielding tensor σ(31P) and 2J(31P,13C) coupling constants in nucleic acid phosphate to coordination of the Mg2+ cation

artículo científico publicado en 2011

Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies

artículo científico publicado en 2013

Charge transport in DNA oligonucleotides with various base-pairing patterns

artículo científico publicado en 2010

Conductivity of natural and modified DNA measured by scanning tunneling microscopy. The effect of sequence, charge and stacking

scientific article published on 28 August 2008

Conformational diversity of single-stranded DNA from bacterial repetitive extragenic palindromes: Implications for the DNA recognition elements of transposases

artículo científico publicado en 2015

Conformations of the sugar-phosphate backbone in helical DNA crystal structures

artículo científico publicado en 1997

Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers

artículo científico publicado en 1992

DNA conformations and their sequence preferences.

artículo científico publicado en 2008

DNATCO: assignment of DNA conformers at dnatco.org.

artículo científico publicado en 2016

Discriminative interactions between chiral molecules: internal discrimination in 1,2-difluorohydrazine

Draft Genome Sequence of Stenotrophomonas maltophilia Strain 5BA-I-2, a Soil Isolate and a Member of a Phylogenetically Basal Lineage

artículo científico publicado en 2014

Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides

artículo científico publicado en 2008

Evolution of REP diversity: a comparative study

artículo científico publicado en 2013

Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1

scientific article published on 12 June 2019

Geometry of the Phosphate Group and Its Interactions with Metal Cations in Crystals andab InitioCalculations

scientific article published in 1996

Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells

artículo científico publicado en 2013

Hydration of DNA bases: analysis of crystallographic data

artículo científico publicado el 1 de julio de 1992

Hydration of proteins and nucleic acids: Advances in experiment and theory. A review.

artículo científico publicado en 2016

Hydration of the DNA bases is local

artículo científico publicado en 1995

Increasing affinity of interferon-γ receptor 1 to interferon-γ by computer-aided design.

artículo científico publicado en 2013

Indirect NMR Spin−Spin Coupling Constants3J(P,C) and2J(P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids

artículo científico publicado en 2006

Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function

artículo científico publicado en 2018

Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids

artículo científico publicado en 2004

Local dynamics of proteins and DNA evaluated from crystallographic B factors

artículo científico publicado en 2014

Low temperature structures of dCpG-proflavine. Conformational and hydration effects

artículo científico publicado en 1992

MP4 Interaction energies and basis set superposition errors for the (H2)2dimer

Monitoring RAYT activity by surface plasmon resonance biosensor

artículo científico

Potential energy surface of the (H2)2 dimer: an MP2 study

Protein and drug interactions in the minor groove of DNA.

artículo científico publicado en 2002

Protein flexibility in the light of structural alphabets

artículo científico publicado en 2015

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

artículo científico publicado en 2008

Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model

artículo científico publicado en 2015

Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org

scientific article published on 17 August 2020

Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches

artículo científico publicado en 2020

Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings.

artículo científico publicado en 2009

Structure of a platinum(II) complex of levamisole

scientific article published on 01 July 1993

Structure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition

artículo científico publicado en 1993

Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.

artículo científico publicado en 2015

Sugar pucker modulates the cross-correlated relaxation rates across the glycosidic bond in DNA.

artículo científico publicado en 2005

The PDB data uniformity project

artículo científico publicado en 2001

The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form.

artículo científico publicado en 2018

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations

artículo científico publicado en 2017

When will RNA get its AlphaFold moment?

artículo científico publicado en 2023

Lista de obras de Bohdan Schneider

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle.

A DNA structural alphabet provides new insight into DNA flexibility

A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)

A short survey on protein blocks.

A systematic method for studying the spatial distribution of water molecules around nucleic acid bases

A unified dinucleotide alphabet describing both RNA and DNA structures

Automatic workflow for the classification of local DNA conformations

Bioinformatic analysis of the protein/DNA interface.

Building of RNA and DNA double helices into electron density

Calculating the response of NMR shielding tensor σ(31P) and 2J(31P,13C) coupling constants in nucleic acid phosphate to coordination of the Mg2+ cation

Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies

Charge transport in DNA oligonucleotides with various base-pairing patterns

Conductivity of natural and modified DNA measured by scanning tunneling microscopy. The effect of sequence, charge and stacking

Conformational diversity of single-stranded DNA from bacterial repetitive extragenic palindromes: Implications for the DNA recognition elements of transposases

Conformations of the sugar-phosphate backbone in helical DNA crystal structures

Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers

DNA conformations and their sequence preferences.

DNATCO: assignment of DNA conformers at dnatco.org.

Discriminative interactions between chiral molecules: internal discrimination in 1,2-difluorohydrazine

Draft Genome Sequence of Stenotrophomonas maltophilia Strain 5BA-I-2, a Soil Isolate and a Member of a Phylogenetically Basal Lineage

Effect of local sugar and base geometry on 13C and 15N magnetic shielding anisotropy in DNA nucleosides

Evolution of REP diversity: a comparative study

Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1

Geometry of the Phosphate Group and Its Interactions with Metal Cations in Crystals andab InitioCalculations

Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells

Hydration of DNA bases: analysis of crystallographic data

Hydration of proteins and nucleic acids: Advances in experiment and theory. A review.

Hydration of the DNA bases is local

Increasing affinity of interferon-γ receptor 1 to interferon-γ by computer-aided design.

Indirect NMR Spin−Spin Coupling Constants3J(P,C) and2J(P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids

Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function

Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids

Local dynamics of proteins and DNA evaluated from crystallographic B factors

Low temperature structures of dCpG-proflavine. Conformational and hydration effects

MP4 Interaction energies and basis set superposition errors for the (H2)2dimer

Monitoring RAYT activity by surface plasmon resonance biosensor

Potential energy surface of the (H2)2 dimer: an MP2 study

Protein and drug interactions in the minor groove of DNA.

Protein flexibility in the light of structural alphabets

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model

Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org

Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches

Structure and dynamics of the ApA, ApC, CpA, and CpC RNA dinucleoside monophosphates resolved with NMR scalar spin-spin couplings.

Structure of a platinum(II) complex of levamisole

Structure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition

Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.

Sugar pucker modulates the cross-correlated relaxation rates across the glycosidic bond in DNA.

The PDB data uniformity project

The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form.

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations

When will RNA get its AlphaFold moment?