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Lista de obras de Jeroen Krijgsveld

'Corrigendum to "Ataxin-10 is part of a cachexokine cocktail triggering cardiac metabolic dysfunction in cancer cachexia" [Molecular Metabolism 5 (2) (2015) 67-78]'

scientific article published on 04 March 2020

5-azacytidine inhibits nonsense-mediated decay in a MYC-dependent fashion.

artículo científico publicado en 2014

A P4-ATPase protein interaction network reveals a link between aminophospholipid transport and phosphoinositide metabolism

artículo científico publicado en 2010

A high-quality catalog of the Drosophila melanogaster proteome

artículo científico publicado en 2007

A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells

artículo científico publicado en 2008

A quest for human and mouse embryonic stem cell-specific proteins.

artículo científico publicado en 2006

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

artículo científico publicado en 2008

Activation of the TGFβ pathway impairs endothelial to haematopoietic transition

artículo científico publicado en 2016

Advances in stem cell proteomics

artículo científico publicado en 2017

An AC-5 cathepsin B-like protease purified from Haemonchus contortus excretory secretory products shows protective antigen potential for lambs

artículo científico publicado en 2009

An efficient and scalable pipeline for epitope tagging in mammalian stem cells using Cas9 ribonucleoprotein.

artículo científico publicado en 2018

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

artículo científico publicado en 2007

Ataxin-10 is part of a cachexokine cocktail triggering cardiac metabolic dysfunction in cancer cachexia

artículo científico publicado en 2015

Author Correction: BCAT1 restricts αKG levels in AML stem cells leading to IDH-like DNA hypermethylation

artículo científico publicado en 2018

Author Correction: BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation

artículo científico publicado en 2018

Automated sample preparation with SP3 for low-input clinical proteomics

artículo científico publicado en 2020

BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation

artículo científico publicado en 2017

Bifunctional Sphingosine for Cell-Based Analysis of Protein-Sphingolipid Interactions

artículo científico publicado en 2015

CHD4 is a RanGTP-dependent MAP that stabilizes microtubules and regulates bipolar spindle formation

artículo científico publicado en 2013

Combining pulsed SILAC labeling and click-chemistry for quantitative secretome analysis

artículo científico publicado en 2014

Comparative Secretome Analyses of Primary Murine White and Brown Adipocytes Reveal Novel Adipokines

scientific article published on 22 August 2018

Comprehensive Identification of RNA-Binding Domains in Human Cells.

artículo científico publicado en 2016

Comprehensive Identification of RNA-Binding Proteins by RNA Interactome Capture

artículo científico publicado en 2016

Comprehensive analysis of the secreted proteins of the parasite Haemonchus contortus reveals extensive sequence variation and differential immune recognition

artículo científico publicado en 2003

Comprehensive histone phosphorylation analysis and identification of Pf14-3-3 protein as a histone H3 phosphorylation reader in malaria parasites

artículo científico publicado en 2013

Cooperative binding of two acetylation marks on a histone tail by a single bromodomain

artículo científico publicado en 2009

Crystal Structure of the CTP1L Endolysin Reveals How Its Activity Is Regulated by a Secondary Translation Product.

artículo científico publicado en 2015

Defining pluripotent stem cells through quantitative proteomic analysis.

artículo científico publicado en 2011

Developments in quantitative mass spectrometry for the analysis of proteome dynamics

artículo científico publicado en 2012

Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes

artículo científico publicado en 2004

EPEN-04. CXorf67 MIMICS ONCOGENIC HISTONE H3 K27M MUTATIONS AND FUNCTIONS AS INTRINSIC INHIBITOR OF PRC2 FUNCTION IN AGGRESSIVE POSTERIOR FOSSA EPENDYMOMA

artículo científico publicado en 2019

EZHIP/CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma

artículo científico publicado en 2019

Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice

artículo científico publicado en 2003

Embryonic stem cell proteomics

artículo científico publicado en 2006

Exosomal secretion of cytoplasmic prostate cancer xenograft-derived proteins

artículo científico publicado en 2009

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

artículo científico publicado en 2016

Feeder-Free Monolayer Cultures of Human Embryonic Stem Cells Express an Epithelial Plasma Membrane Protein Profile

article

GATA-1 forms distinct activating and repressive complexes in erythroid cells

artículo científico publicado en 2005

GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7

artículo científico publicado en 2005

Genomic Rewiring of SOX2 Chromatin Interaction Network during Differentiation of ESCs to Postmitotic Neurons

scientific article published on 05 June 2020

Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila

artículo científico publicado en 2016

Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency

artículo científico publicado en 2012

Human Mast Cell Proteome Reveals Unique Lineage, Putative Functions, and Structural Basis for Cell Ablation

artículo científico publicado en 2020

Human Proteome Organisation's 7th World Congress, 2008.

artículo científico publicado en 2008

IceR improves proteome coverage and data completeness in global and single-cell proteomics

artículo científico publicado en 2021

Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes

artículo científico publicado en 2016

Identification of RNA-binding Proteins in Macrophages by Interactome Capture

artículo científico

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap.

artículo científico publicado en 2017

Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes

artículo científico publicado en 2010

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.

artículo científico publicado en 2014

Identification of secreted cysteine proteases from the parasitic nematode Haemonchus contortus detected by biotinylated inhibitors.

artículo científico publicado en 2006

Immediate protein targets of photodynamic treatment in carcinoma cells

artículo científico publicado en 2008

In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition

artículo científico publicado en 2009

In-gel isoelectric focusing of peptides as a tool for improved protein identification

artículo científico publicado en 2006

Inflammation-Induced Emergency Megakaryopoiesis Driven by Hematopoietic Stem Cell-like Megakaryocyte Progenitors.

artículo científico publicado en 2015

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

artículo científico publicado en 2012

Lung proteome alterations in a mouse model for nonallergic asthma.

artículo científico publicado en 2003

Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach

artículo científico publicado en 2009

MEDU-01. HDACi AND PLK1i ACT SYNERGISTICALLY IN MYC-AMPLIFIED MEDULLOBLASTOMA

artículo científico publicado en 2019

MSQuant: a platform for stable isotope-based quantitative proteomics.

artículo científico publicado en 2012

Mass Spectrometric Analysis of theSchistosomamansoniTegumental Sub-proteome

article

Mass spectrometric identification of human prostate cancer-derived proteins in serum of xenograft-bearing mice

scientific article published on 19 May 2006

Mass spectrometry-based quantitative proteomics.

artículo científico publicado en 2004

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics

artículo científico publicado en 2003

Metabolic labeling of model organisms using heavy nitrogen (15N).

artículo científico publicado en 2011

Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity

artículo científico publicado en 2020

Munc13-4 is an effector of rab27a and controls secretion of lysosomes in hematopoietic cells

artículo científico publicado en 2005

Native thrombocidin-1 and unfolded thrombocidin-1 exert antimicrobial activity via distinct structural elements

artículo científico publicado en 2011

New advances in reproductive biomedicine

artículo científico publicado en 2014

Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring

artículo científico publicado en 2018

Nonprocessive methylation by Dot1 leads to functional redundancy of histone H3K79 methylation states

artículo científico publicado en 2008

Novel Hsp90 partners discovered using complementary proteomic approaches

artículo científico publicado en 2009

Novel binding partners of Ldb1 are required for haematopoietic development

artículo científico publicado en 2006

On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics

artículo científico publicado en 2010

Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics

artículo científico publicado en 2008

Organic phase separation opens up new opportunities to interrogate the RNA-binding proteome

artículo científico publicado en 2020

Origin of monocytes and macrophages in a committed progenitor

artículo científico publicado en 2013

Orthogonal separation techniques for the characterization of the yeast nuclear proteome.

artículo científico publicado en 2009

Phosphorylation dynamics during early differentiation of human embryonic stem cells.

artículo científico publicado en 2009

Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells

artículo científico publicado en 2008

Progressive methylation of ageing histones by Dot1 functions as a timer.

artículo científico

Properties of isotope patterns and their utility for peptide identification in large-scale proteomic experiments.

artículo científico publicado en 2013

Protease-resistant streptavidin for interaction proteomics

scientific article published on 01 May 2020

Protein tyrosine kinase 2b inhibition reverts niche-associated resistance to tyrosine kinase inhibitors in AML

scientific article published in 2022

Proteome Biology of Stem Cells

artículo científico publicado en 2008

Proteome and Secretome Characterization of Glioblastoma-Derived Neural Stem Cells

artículo científico publicado en 2016

Proteome biology of stem cells

Proteomes of animal oocytes: what can we learn for human oocytes in the in vitro fertilization programme?

artículo científico publicado en 2014

Proteomic Analysis Reveals Branch-specific Regulation of the Unfolded Protein Response by Nonsense-mediated mRNA Decay

artículo científico publicado en 2016

Proteomic analysis of cell fate decision

artículo científico

Proteomic analysis of stem cell differentiation and early development

artículo científico publicado en 2012

Proteomic cornerstones of hematopoietic stem cell differentiation: distinct signatures of multipotent progenitors and myeloid committed cells

artículo científico publicado en 2012

Proteomics and human embryonic stem cells

artículo científico publicado en 2008

Quantitative Proteomics Identifies TCF1 as a Negative Regulator of Foxp3 Expression in Conventional T Cells

artículo científico publicado en 2020

Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research

artículo científico publicado en 2004

Quantitative proteomics by metabolic labeling of model organisms

artículo científico publicado en 2009

Quantitative proteomics reveals specific metabolic features of Acute Myeloid Leukemia stem cells

scientific article published on 18 June 2020

Quantitative proteomics reveals the dynamics of protein changes during Drosophila oocyte maturation and the oocyte-to-embryo transition

artículo científico publicado en 2014

Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome

scientific article published on 28 June 2018

Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation

artículo científico publicado en 2014

Recent liquid chromatographic-(tandem) mass spectrometric applications in proteomics

artículo científico publicado en 2003

Reduced chromatin binding of MYC is a key effect of HDAC inhibition in MYC amplified medulloblastoma

artículo científico publicado en 2020

Repression of Human Papillomavirus Oncogene Expression under Hypoxia Is Mediated by PI3K/mTORC2/AKT Signaling

artículo científico publicado en 2019

Searching for proteins of Mycobacterium avium subspecies paratuberculosis with diagnostic potential by comparative qualitative proteomic analysis of mycobacterial tuberculins

artículo científico publicado en 2009

Secretome Analysis of Cardiomyocytes Identifies PCSK6 as a Novel Player in Cardiac Remodeling After Myocardial Infarction

artículo científico publicado en 2020

Secretome profiling of heterotypic spheroids suggests a role of fibroblasts in HIF-1 pathway modulation and colorectal cancer photodynamic resistance

artículo científico publicado en 2019

Selective enrichment of newly synthesized proteins for quantitative secretome analysis

artículo científico publicado en 2012

Single-pot, solid-phase-enhanced sample preparation for proteomics experiments

scientific article published on 01 January 2019

Site-specific methylation of 18S ribosomal RNA by SNORD42A is required for Acute Myeloid Leukemia cell proliferation

scientific article published on 25 February 2020

Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC).

artículo científico publicado en 2018

Spatial distribution of endogenous tissue protease activity in gastric carcinoma mapped by MALDI mass spectrometry imaging

artículo científico publicado en 2018

Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection

artículo científico publicado en 2020

Specific RNP capture with antisense LNA/DNA mixmers.

artículo científico publicado en 2017

Specific inflammatory osteoclast precursors induced during chronic inflammation give rise to highly active osteoclasts associated with inflammatory bone loss

artículo científico publicado en 2022

Src kinase modulates the apoptotic p53 pathway by altering HIPK2 localization.

artículo científico publicado en 2013

Suppression of Mediator is regulated by Cdk8-dependent Grr1 turnover of the Med3 coactivator

artículo científico publicado en 2014

System-wide identification of RNA-binding proteins by interactome capture.

artículo científico publicado en 2013

Targeted analysis of protein termini.

artículo científico publicado en 2007

Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish.

artículo científico publicado en 2011

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses

article

The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.

artículo científico publicado en 2016

The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest

The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest

artículo científico publicado en 2018

The RNA-Binding Protein YBX3 Controls Amino Acid Levels by Regulating SLC mRNA Abundance

artículo científico publicado en 2019

The RNA-binding protein repertoire of embryonic stem cells.

artículo científico publicado en 2013

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

artículo científico publicado en 2015

The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ

artículo científico publicado en 2018

The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ

The ecoresponsive genome of Daphnia pulex

artículo científico publicado en 2011

The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells

artículo científico publicado en 2017

The quest of cell surface markers for stem cell therapy

artículo científico publicado en 2020

The time is right: proteome biology of stem cells

artículo científico publicado en 2008

Transcription Factor 7 Limits Regulatory T Cell Generation in the Thymus.

artículo científico publicado en 2015

Transcriptional addiction in cancer cells is mediated by YAP/TAZ through BRD4.

artículo científico publicado en 2018

Transcriptome-wide profiling and posttranscriptional analysis of hematopoietic stem/progenitor cell differentiation toward myeloid commitment

artículo científico publicado en 2014

Turning Over Paradigms in Protein Decay

artículo científico publicado en 2016

Ultrasensitive proteome analysis using paramagnetic bead technology

artículo científico publicado en 2014

Updated and enhanced pig cardiac transcriptome based on long-read RNA sequencing and proteomics

artículo científico publicado en 2020

Widespread changes in the posttranscriptional landscape at the Drosophila oocyte-to-embryo transition

artículo científico publicado en 2014

Worms from venus and mars: proteomics profiling of sexual differences in Caenorhabditis elegans using in vivo 15N isotope labeling.

artículo científico

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