Lista de obras - Walter L. Ruzzo - Dominio Público Uruguay

A Marfan syndrome gene expression phenotype in cultured skin fibroblasts

artículo científico publicado en 2007

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

artículo científico publicado en 2007

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

artículo científico publicado en 2004

A linear time algorithm for finding all maximal scoring subsequences

artículo científico publicado en 1999

A microbial profiling method for the human microbiota using high-throughput sequencing.

artículo científico publicado en 2013

A new approach to bias correction in RNA-Seq

artículo científico publicado en 2012

A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.

artículo científico publicado en 2006

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

artículo científico publicado en 2008

Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data

artículo científico publicado en 2014

Associating transcription factors and conserved RNA structures with gene regulation in the human brain.

artículo científico

Atherosclerotic plaque smooth muscle cells have a distinct phenotype

artículo científico publicado en 2004

Bone morphogenetic protein 4: potential regulator of shear stress-induced graft neointimal atrophy.

artículo científico publicado en 2006

Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis

artículo científico publicado en 2017

Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions

artículo científico publicado en 2007

Comparison of endogenous and overexpressed MyoD shows enhanced binding of physiologically bound sites.

artículo científico publicado en 2013

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

artículo científico publicado en 2012

Concepts and introduction to RNA bioinformatics

artículo científico publicado en 2014

DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy.

artículo científico publicado en 2011

De novo discovery of structured ncRNA motifs in genomic sequences

artículo científico publicado en 2014

De novo prediction of structured RNAs from genomic sequences

artículo científico publicado en 2009

Discriminative motif analysis of high-throughput dataset.

artículo científico publicado en 2013

Finding non-coding RNAs through genome-scale clustering.

artículo científico publicado en 2009

Genetic and epigenetic determinants of neurogenesis and myogenesis.

artículo científico publicado en 2012

Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

artículo científico

How accurately is ncRNA aligned within whole-genome multiple alignments?

artículo científico publicado en 2007

Improved gene selection for classification of microarrays

artículo científico publicado en 2003

Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes

artículo científico publicado en 2015

Integration of 198 ChIP-seq datasets reveals human cis-regulatory regions

artículo científico publicado en 2012

Isolator: accurate and stable analysis of isoform-level expression in RNA-Seq experiments

scholarly article published 20 November 2016

Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes

artículo científico publicado en 2015

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

artículo científico publicado en 2006

MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries

artículo científico publicado en 2008

Model-based clustering and data transformations for gene expression data ⬇️

artículo científico publicado el 1 de octubre de 2001

Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies

artículo científico publicado en 2009

Pre-mRNA secondary structure prediction aids splice site prediction.

artículo científico publicado en 2002

Principal component analysis for clustering gene expression data.

artículo científico publicado en 2001

Results on communication complexity classes

article by Tak Wah Lam & Walter L. Ruzzo published April 1992 in Journal of Computer and System Sciences

Sequence-based heuristics for faster annotation of non-coding RNA families.

artículo científico publicado en 2005

Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana.

artículo científico publicado en 2018

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

artículo científico publicado en 2008

The identification and functional annotation of RNA structures conserved in vertebrates.

artículo científico publicado en 2017

Time-Space Tradeoffs for Undirected Graph Traversal by Graph Automata

Transcriptional analyses of Barrett's metaplasia and normal upper GI mucosae

artículo científico publicado en 2002

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain

artículo científico publicado en 2012

Two Applications of Inductive Counting for Complementation Problems

artículo científico publicado en 1989

Validating clustering for gene expression data.

artículo científico publicado en 2001

Lista de obras de Walter L. Ruzzo

A Marfan syndrome gene expression phenotype in cultured skin fibroblasts

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

A linear time algorithm for finding all maximal scoring subsequences

A microbial profiling method for the human microbiota using high-throughput sequencing.

A new approach to bias correction in RNA-Seq

A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data

Associating transcription factors and conserved RNA structures with gene regulation in the human brain.

Atherosclerotic plaque smooth muscle cells have a distinct phenotype

Bone morphogenetic protein 4: potential regulator of shear stress-induced graft neointimal atrophy.

Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis

Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions

Comparison of endogenous and overexpressed MyoD shows enhanced binding of physiologically bound sites.

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

Concepts and introduction to RNA bioinformatics

DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy.

De novo discovery of structured ncRNA motifs in genomic sequences

De novo prediction of structured RNAs from genomic sequences

Discriminative motif analysis of high-throughput dataset.

Finding non-coding RNAs through genome-scale clustering.

Genetic and epigenetic determinants of neurogenesis and myogenesis.

Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

How accurately is ncRNA aligned within whole-genome multiple alignments?

Improved gene selection for classification of microarrays

Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes

Integration of 198 ChIP-seq datasets reveals human cis-regulatory regions

Isolator: accurate and stable analysis of isoform-level expression in RNA-Seq experiments

Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries

Model-based clustering and data transformations for gene expression data ⬇️

Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies

Pre-mRNA secondary structure prediction aids splice site prediction.

Principal component analysis for clustering gene expression data.

Results on communication complexity classes

Sequence-based heuristics for faster annotation of non-coding RNA families.

Sexual ancestors generated an obligate asexual and globally dispersed clone within the model diatom species Thalassiosira pseudonana.

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches

The identification and functional annotation of RNA structures conserved in vertebrates.

Time-Space Tradeoffs for Undirected Graph Traversal by Graph Automata

Transcriptional analyses of Barrett's metaplasia and normal upper GI mucosae

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain

Two Applications of Inductive Counting for Complementation Problems

Validating clustering for gene expression data.