Lista de obras - Andrés Legarra - Dominio Público Uruguay

A combined coalescence gene-dropping tool for evaluating genomic selection in complex scenarios (ms2gs).

artículo científico publicado en 2016

A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species.

artículo científico publicado en 2015

A comparison of methods to estimate genomic relationships using pedigree and markers in livestock populations.

artículo científico publicado en 2016

A comparison of partial least squares (PLS) and sparse PLS regressions in genomic selection in French dairy cattle.

artículo científico publicado en 2012

A fast indirect method to compute functions of genomic relationships concerning genotyped and ungenotyped individuals, for diversity management

artículo científico publicado en 2017

A genome scan for QTL affecting resistance to Haemonchus contortus in sheep.

artículo científico publicado en 2012

A note on the rationale for estimating genealogical coancestry from molecular markers

artículo científico publicado en 2011

Accuracy of estimated breeding values with genomic information on males, females, or both: an example on broiler chicken

artículo científico publicado en 2015

Alternative SNP weighting for single-step genomic best linear unbiased predictor evaluation of stature in US Holsteins in the presence of selected sequence variants

artículo científico publicado en 2019

Ancestral Relationships Using Metafounders: Finite Ancestral Populations and Across Population Relationships

artículo científico publicado en 2015

Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesCπ methods for genomic selection in French Holstein and Montbéliarde breeds.

artículo científico publicado en 2012

Assessment of accuracy of genomic prediction for French Lacaune dairy sheep.

artículo científico publicado en 2013

Behavior of the Linear Regression method to estimate bias and accuracies with correct and incorrect genetic evaluation models

scientific article published on 06 November 2019

Comparing estimates of genetic variance across different relationship models.

artículo científico publicado en 2015

Computation of deregressed proofs for genomic selection when own phenotypes exist with an application in French show-jumping horses

artículo científico publicado en 2012

Computational strategies for national integration of phenotypic, genomic, and pedigree data in a single-step best linear unbiased prediction

artículo científico publicado en 2012

Correction to: Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

scientific article published on 22 November 2019

Detection of unrecorded environmental challenges in high-frequency recorded traits, and genetic determinism of resilience to challenge, with an application on feed intake in lambs

artículo científico publicado en 2021

Differences between genomic-based and pedigree-based relationships in a chicken population, as a function of quality control and pedigree links among individuals

artículo científico publicado en 2014

Economic weights of fertility, prolificacy, milk yield and longevity in dairy sheep

artículo científico publicado en 2007

Economic weights of somatic cell score in dairy sheep

artículo científico publicado en 2007

Effects of ignoring inbreeding in model-based accuracy for BLUP and SSGBLUP

artículo científico publicado en 2020

Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator

artículo científico publicado en 2016

Exploring the inclusion of genomic information and metafounders in Latxa dairy sheep genetic evaluations

artículo científico publicado en 2020

Fine-mapping quantitative trait loci with a medium density marker panel: efficiency of population structures and comparison of linkage disequilibrium linkage analysis models ⬇️

artículo científico publicado el 1 de agosto de 2012

Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle.

artículo científico publicado en 2019

GWAS by GBLUP: Single and Multimarker EMMAX and Bayes Factors, with an Example in Detection of a Major Gene for Horse Gait

artículo científico publicado en 2018

Genetic basis of semen traits and their relationship with growth rate in rabbits

artículo científico publicado en 2011

Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP.

artículo científico publicado en 2015

Genetic parameters for growth and faecal worm egg count following Haemonchus contortus experimental infestations using pedigree and molecular information

artículo científico publicado en 2014

Genome-wide association mapping including phenotypes from relatives without genotypes

artículo científico publicado en 2012

Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens.

artículo científico publicado en 2014

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs.

artículo científico publicado en 2016

Genomic Model with Correlation Between Additive and Dominance Effects

artículo científico publicado en 2018

Genomic analysis of dominance effects on milk production and conformation traits in Fleckvieh cattle.

artículo científico publicado en 2014

Genomic selection in the French Lacaune dairy sheep breed.

artículo científico publicado en 2012

Hot topic: Use of genomic recursions in single-step genomic best linear unbiased predictor (BLUP) with a large number of genotypes

artículo científico publicado en 2015

Implementation of genomic recursions in single-step genomic best linear unbiased predictor for US Holsteins with a large number of genotyped animals.

artículo científico publicado en 2016

Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels

artículo científico publicado en 2015

Joint genomic evaluation of French dairy cattle breeds using multiple-trait models.

artículo científico publicado en 2012

LDSO: a program to simulate pedigrees and molecular information under various evolutionary forces.

artículo científico publicado en 2012

Metafounders are Fst fixation indices and reduce bias in single step genomic evaluations

article

Metafounders are related to F st fixation indices and reduce bias in single-step genomic evaluations

artículo científico publicado en 2017

Methods to approximate reliabilities in single-step genomic evaluation.

artículo científico publicado en 2012

Multi-breed genetic evaluation in a Gelbvieh population.

artículo científico publicado en 2007

Multibreed genomic evaluation for production traits of dairy cattle in the United States using single-step genomic best linear unbiased predictor

artículo científico publicado en 2022

On the additive and dominant variance and covariance of individuals within the genomic selection scope

artículo científico publicado en 2013

Pedigree and genomic evaluation of pigs using a terminal-cross model

artículo científico publicado en 2016

Pedigree-based estimation of covariance between dominance deviations and additive genetic effects in closed rabbit lines considering inbreeding and using a computationally simpler equivalent model

artículo científico publicado en 2017

Quality control of genotypes using heritability estimates of gene content at the marker

artículo científico publicado en 2015

Removing data and using metafounders alleviates biases for all traits in Lacaune dairy sheep predictions

artículo científico publicado en 2022

Role of inbreeding depression, non-inbred dominance deviations and random year-season effect in genetic trends for prolificacy in closed rabbit lines.

artículo científico publicado en 2017

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

article

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

artículo científico publicado en 2015

Short communication: Accounting for new mutations in genomic prediction models

artículo científico publicado en 2013

Short communication: Methods to compute genomic inbreeding for ungenotyped individuals

scientific article published on 11 February 2020

Single-marker and multi-marker mixed models for polygenic score analysis in family-based data

artículo científico publicado en 2014

The Dimensionality of Genomic Information and Its Effect on Genomic Prediction

artículo científico publicado en 2016

The coefficient of dominance is not (always) estimable with biallelic markers

artículo científico publicado en 2014

Unknown-parent groups in single-step genomic evaluation.

artículo científico publicado en 2013

Using recursion to compute the inverse of the genomic relationship matrix.

artículo científico publicado en 2014

Variance and covariance of actual relationships between relatives at one locus

artículo científico publicado en 2013

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS

artículo científico publicado en 2016

Within- and across-breed genomic predictions and genomic relationships for Western Pyrenees dairy sheep breeds Latxa, Manech, and Basco-Béarnaise

artículo científico publicado en 2014

Lista de obras de Andrés Legarra

A combined coalescence gene-dropping tool for evaluating genomic selection in complex scenarios (ms2gs).

A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species.

A comparison of methods to estimate genomic relationships using pedigree and markers in livestock populations.

A comparison of partial least squares (PLS) and sparse PLS regressions in genomic selection in French dairy cattle.

A fast indirect method to compute functions of genomic relationships concerning genotyped and ungenotyped individuals, for diversity management

A genome scan for QTL affecting resistance to Haemonchus contortus in sheep.

A note on the rationale for estimating genealogical coancestry from molecular markers

Accuracy of estimated breeding values with genomic information on males, females, or both: an example on broiler chicken

Alternative SNP weighting for single-step genomic best linear unbiased predictor evaluation of stature in US Holsteins in the presence of selected sequence variants

Ancestral Relationships Using Metafounders: Finite Ancestral Populations and Across Population Relationships

Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesCπ methods for genomic selection in French Holstein and Montbéliarde breeds.

Assessment of accuracy of genomic prediction for French Lacaune dairy sheep.

Behavior of the Linear Regression method to estimate bias and accuracies with correct and incorrect genetic evaluation models

Comparing estimates of genetic variance across different relationship models.

Computation of deregressed proofs for genomic selection when own phenotypes exist with an application in French show-jumping horses

Computational strategies for national integration of phenotypic, genomic, and pedigree data in a single-step best linear unbiased prediction

Correction to: Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

Detection of unrecorded environmental challenges in high-frequency recorded traits, and genetic determinism of resilience to challenge, with an application on feed intake in lambs

Differences between genomic-based and pedigree-based relationships in a chicken population, as a function of quality control and pedigree links among individuals

Economic weights of fertility, prolificacy, milk yield and longevity in dairy sheep

Economic weights of somatic cell score in dairy sheep

Effects of ignoring inbreeding in model-based accuracy for BLUP and SSGBLUP

Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator

Exploring the inclusion of genomic information and metafounders in Latxa dairy sheep genetic evaluations

Fine-mapping quantitative trait loci with a medium density marker panel: efficiency of population structures and comparison of linkage disequilibrium linkage analysis models ⬇️

Frequentist p-values for large-scale-single step genome-wide association, with an application to birth weight in American Angus cattle.

GWAS by GBLUP: Single and Multimarker EMMAX and Bayes Factors, with an Example in Detection of a Major Gene for Horse Gait

Genetic basis of semen traits and their relationship with growth rate in rabbits

Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP.

Genetic parameters for growth and faecal worm egg count following Haemonchus contortus experimental infestations using pedigree and molecular information

Genome-wide association mapping including phenotypes from relatives without genotypes

Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens.

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs.

Genomic Model with Correlation Between Additive and Dominance Effects

Genomic analysis of dominance effects on milk production and conformation traits in Fleckvieh cattle.

Genomic selection in the French Lacaune dairy sheep breed.

Hot topic: Use of genomic recursions in single-step genomic best linear unbiased predictor (BLUP) with a large number of genotypes

Implementation of genomic recursions in single-step genomic best linear unbiased predictor for US Holsteins with a large number of genotyped animals.

Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels

Joint genomic evaluation of French dairy cattle breeds using multiple-trait models.

LDSO: a program to simulate pedigrees and molecular information under various evolutionary forces.

Metafounders are Fst fixation indices and reduce bias in single step genomic evaluations

Metafounders are related to F st fixation indices and reduce bias in single-step genomic evaluations

Methods to approximate reliabilities in single-step genomic evaluation.

Multi-breed genetic evaluation in a Gelbvieh population.

Multibreed genomic evaluation for production traits of dairy cattle in the United States using single-step genomic best linear unbiased predictor

On the additive and dominant variance and covariance of individuals within the genomic selection scope

Pedigree and genomic evaluation of pigs using a terminal-cross model

Pedigree-based estimation of covariance between dominance deviations and additive genetic effects in closed rabbit lines considering inbreeding and using a computationally simpler equivalent model

Quality control of genotypes using heritability estimates of gene content at the marker

Removing data and using metafounders alleviates biases for all traits in Lacaune dairy sheep predictions

Role of inbreeding depression, non-inbred dominance deviations and random year-season effect in genetic trends for prolificacy in closed rabbit lines.

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

Short communication: Accounting for new mutations in genomic prediction models

Short communication: Methods to compute genomic inbreeding for ungenotyped individuals

Single-marker and multi-marker mixed models for polygenic score analysis in family-based data

The Dimensionality of Genomic Information and Its Effect on Genomic Prediction

The coefficient of dominance is not (always) estimable with biallelic markers

Unknown-parent groups in single-step genomic evaluation.

Using recursion to compute the inverse of the genomic relationship matrix.

Variance and covariance of actual relationships between relatives at one locus

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS

Within- and across-breed genomic predictions and genomic relationships for Western Pyrenees dairy sheep breeds Latxa, Manech, and Basco-Béarnaise