Lista de obras - Takeya Kasukawa - Dominio Público Uruguay

A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock

artículo científico publicado en 2007

A promoter-level mammalian expression atlas

artículo científico publicado en 2014

Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags

artículo científico publicado en 2004

Acute induction of Eya3 by late-night light stimulation triggers TSHβ expression in photoperiodism

artículo científico publicado en 2010

Alternate transcription of the Toll-like receptor signaling cascade

artículo científico publicado en 2006

An atlas of human long non-coding RNAs with accurate 5' ends.

artículo científico publicado en 2017

An integrated expression atlas of miRNAs and their promoters in human and mouse.

artículo científico publicado en 2017

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

artículo científico publicado en 2002

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scholarly article published in Scientific Data

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

scientific article published in Nature Communications

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

artículo científico publicado en 2006

CDS annotation in full-length cDNA sequence

artículo científico publicado en 2003

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

artículo científico publicado en 2003

Cell-cycle-independent transitions in temporal identity of mammalian neural progenitor cells

artículo científico publicado en 2016

Comparative transcriptomics of primary cells in vertebrates

artículo científico publicado en 2020

Comprehensive analysis of the mouse metabolome based on the transcriptome

artículo científico

Connecting sequence and biology in the laboratory mouse

artículo científico publicado en 2003

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

article

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

scholarly article published in Nature Genetics

Development and evaluation of an automated annotation pipeline and cDNA annotation system

artículo científico publicado en 2003

Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units

artículo científico publicado en 2006

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

artículo científico publicado en 2021

Discrimination of non-protein-coding transcripts from protein-coding mRNA.

artículo científico publicado en 2006

EpiFactors: a comprehensive database of human epigenetic factors and complexes

artículo científico publicado en 2015

Establishment of Functional Genomics Pipeline in Epiblast-Like Tissue by Combining Transcriptomic Analysis and Gene Knockdown/Knockin/Knockout, Using RNA Interference and CRISPR/Cas9.

artículo científico publicado en 2016

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.

artículo científico publicado en 2002

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

artículo científico publicado en 2020

FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones

artículo científico publicado el 1 de febrero de 2003

FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

artículo científico

FANTOM5 CAGE profiles of human and mouse samples

artículo científico

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

artículo científico publicado en 2016

FREP: a database of functional repeats in mouse cDNAs

artículo científico publicado en 2004

Foxg1 coordinates the switch from nonradially to radially migrating glutamatergic subtypes in the neocortex through spatiotemporal repression

artículo científico publicado en 2013

Functional annotation of a full-length mouse cDNA collection

artículo científico publicado en 2001

Functional annotation of human long noncoding RNAs via molecular phenotyping

artículo científico publicado en 2020

Gateways to the FANTOM5 promoter level mammalian expression atlas

artículo científico publicado en 2015

Genome Annotation

artículo científico publicado en 2017

Genome-wide analysis of mammalian promoter architecture and evolution

artículo científico publicado en 2006

Human blood metabolite timetable indicates internal body time

artículo científico publicado en 2012

Inducing human retinal pigment epithelium-like cells from somatic tissue

artículo científico publicado en 2022

Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS

artículo científico publicado en 2003

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

artículo científico publicado en 2004

IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells

artículo científico publicado en 2021

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

artículo científico publicado en 2017

MaXML: mouse annotation XML.

artículo científico

Measurement of internal body time by blood metabolomics.

scholarly article

Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation

artículo científico publicado en 2020

Monitoring transcription initiation activities in rat and dog.

artículo científico publicado en 2017

Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep

Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks

artículo científico publicado en 2008

Quantitative expression profile of distinct functional regions in the adult mouse brain

artículo científico publicado en 2011

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

artículo científico publicado en 2020

READ: RIKEN Expression Array Database.

artículo científico publicado en 2002

Recounting the FANTOM CAGEAssociated Transcriptome

scientific article published on 20 February 2020

SCPortalen: human and mouse single-cell centric database

artículo científico publicado en 2017

STAP cells are derived from ES cells

artículo científico publicado en 2015

Self-patterning of rostral-caudal neuroectoderm requires dual role of Fgf signaling for localized Wnt antagonism

artículo científico publicado en 2017

Single-cell gene profiling defines differential progenitor subclasses in mammalian neurogenesis.

artículo científico publicado en 2008

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Systematic Functional Annotation Workflow for Insects

artículo científico publicado en 2022

Systematic analysis of transcription start sites in avian development

artículo científico publicado en 2017

Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays

artículo científico

The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers.

artículo científico publicado en 2017

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

artículo científico

The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression

scientific article published on 01 June 2020

The transcriptional landscape of the mammalian genome

artículo científico publicado en 2005

Thyrotrophin in the pars tuberalis triggers photoperiodic response.

artículo científico publicado en 2008

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

artículo científico publicado en 2015

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

artículo científico publicado en 2006

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

artículo científico publicado en 2017

Transcriptome tomography for brain analysis in the web-accessible anatomical space

artículo científico publicado en 2012

Transcriptomic landscape of the primitive streak.

artículo científico publicado en 2010

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

artículo científico publicado en 2019

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

artículo científico publicado en 2016

[Physical simulation of the transcriptional network of mammalian circadian clocks]

scientific article published on 01 December 2009

[RTPS]

scientific article published on 01 December 2004

refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites

scientific article published on 08 May 2019

Lista de obras de Takeya Kasukawa

A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock

A promoter-level mammalian expression atlas

Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags

Acute induction of Eya3 by late-night light stimulation triggers TSHβ expression in photoperiodism

Alternate transcription of the Toll-like receptor signaling cascade

An atlas of human long non-coding RNAs with accurate 5' ends.

An integrated expression atlas of miRNAs and their promoters in human and mouse.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

CDS annotation in full-length cDNA sequence

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

Cell-cycle-independent transitions in temporal identity of mammalian neural progenitor cells

Comparative transcriptomics of primary cells in vertebrates

Comprehensive analysis of the mouse metabolome based on the transcriptome

Connecting sequence and biology in the laboratory mouse

Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution

Development and evaluation of an automated annotation pipeline and cDNA annotation system

Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Discrimination of non-protein-coding transcripts from protein-coding mRNA.

EpiFactors: a comprehensive database of human epigenetic factors and complexes

Establishment of Functional Genomics Pipeline in Epiblast-Like Tissue by Combining Transcriptomic Analysis and Gene Knockdown/Knockin/Knockout, Using RNA Interference and CRISPR/Cas9.

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones

FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

FANTOM5 CAGE profiles of human and mouse samples

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki

FREP: a database of functional repeats in mouse cDNAs

Foxg1 coordinates the switch from nonradially to radially migrating glutamatergic subtypes in the neocortex through spatiotemporal repression

Functional annotation of a full-length mouse cDNA collection

Functional annotation of human long noncoding RNAs via molecular phenotyping

Gateways to the FANTOM5 promoter level mammalian expression atlas

Genome Annotation

Genome-wide analysis of mammalian promoter architecture and evolution

Human blood metabolite timetable indicates internal body time

Inducing human retinal pigment epithelium-like cells from somatic tissue

Inferring higher functional information for RIKEN mouse full-length cDNA clones with FACTS

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells

Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan

Linking FANTOM5 CAGE peaks to annotations with CAGEscan

MaXML: mouse annotation XML.

Measurement of internal body time by blood metabolomics.

Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation

Monitoring transcription initiation activities in rat and dog.

Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep

Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks

Quantitative expression profile of distinct functional regions in the adult mouse brain

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

READ: RIKEN Expression Array Database.

Recounting the FANTOM CAGEAssociated Transcriptome

SCPortalen: human and mouse single-cell centric database

STAP cells are derived from ES cells

Self-patterning of rostral-caudal neuroectoderm requires dual role of Fgf signaling for localized Wnt antagonism

Single-cell gene profiling defines differential progenitor subclasses in mammalian neurogenesis.

Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells

Systematic Functional Annotation Workflow for Insects

Systematic analysis of transcription start sites in avian development

Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays

The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers.

The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types

The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression

The transcriptional landscape of the mammalian genome

Thyrotrophin in the pars tuberalis triggers photoperiodic response.

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

Transcriptome tomography for brain analysis in the web-accessible anatomical space

Transcriptomic landscape of the primitive streak.

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals

[Physical simulation of the transcriptional network of mammalian circadian clocks]

[RTPS]

refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites