Lista de obras - Alain Laederach - Dominio Público Uruguay

A Functional riboSNitch in the 3' Untranslated Region of FKBP5 Alters MicroRNA-320a Binding Efficiency and Mediates Vulnerability to Chronic Post-Traumatic Pain

scientific article published on 27 August 2018

A novel application of pattern recognition for accurate SNP and indel discovery from high-throughput data: targeted resequencing of the glucocorticoid receptor co-chaperone FKBP5 in a Caucasian population

artículo científico publicado en 2011

A pipeline for computational design of novel RNA-like topologies.

artículo científico publicado en 2018

A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure

artículo científico publicado en 2018

Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease

artículo científico publicado en 2021

An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression

artículo científico publicado en 2017

Arg343 in human surfactant protein D governs discrimination between glucose and N-acetylglucosamine ligands

artículo científico publicado en 2004

Automated docking of alpha-(1-->4)- and alpha-(1-->6)-linked glucosyl trisaccharides and maltopentaose into the soybean beta-amylase active site.

artículo científico

Automated docking of maltose, 2-deoxymaltose, and maltotetraose into the soybean beta-amylase active site

artículo científico publicado en 1999

Classification of RNA structure change by 'gazing' at experimental data

artículo científico publicado en 2017

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

artículo científico publicado en 2009

Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease

artículo científico publicado en 2010

Comparative Visualization of the RNA Suboptimal Conformational Ensemble In Vivo.

artículo científico publicado en 2017

Competing modes of self-association in the regulatory domains of Bruton's tyrosine kinase: Intramolecular contact versus asymmetric homodimerization

scholarly article by Alain Laederach published in January 2002

Competing modes of self-association in the regulatory domains of Bruton's tyrosine kinase: intramolecular contact versus asymmetric homodimerization

artículo científico publicado en 2002

Computational functional genomics

Coplanar and coaxial orientations of RNA bases and helices

artículo científico publicado en 2007

Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark

artículo científico publicado en 2015

Determinants of intra versus intermolecular self-association within the regulatory domains of Rlk and Itk.

artículo científico publicado en 2003

Disease-associated mutations that alter the RNA structural ensemble

artículo científico publicado en 2010

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding

artículo científico publicado en 2007

Distinct responses to rare codons in select <i>Drosophila</i> tissues

artículo científico publicado en 2022

Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs

artículo científico publicado en 2008

Evaluating our ability to predict the structural disruption of RNA by SNPs ⬇️

artículo científico publicado el 18 de junio de 2012

Evaluation of the information content of RNA structure mapping data for secondary structure prediction

artículo científico publicado en 2010

Evolutionary evidence for alternative structure in RNA sequence co-variation

artículo científico publicado en 2013

Exhaustive Enumeration of Kinetic Model Topologies for the Analysis of Time-Resolved RNA Folding

artículo científico publicado en 2009

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

artículo científico publicado en 2008

Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper

artículo científico publicado en 2021

Impact of RNA structure on ZFP36L2 interaction with luteinizing hormone receptor mRNA.

artículo científico publicado en 2017

Increased Transcript Complexity in Genes Associated with Chronic Obstructive Pulmonary Disease

artículo científico publicado en 2015

Informatics challenges in structured RNA.

artículo científico publicado en 2007

Ligand specificity modulated by prolyl imide bond Cis/Trans isomerization in the Itk SH2 domain: a quantitative NMR study

artículo científico publicado en 2003

Local RNA structural changes induced by crystallization are revealed by SHAPE

artículo científico publicado en 2007

Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

artículo científico publicado en 2006

Mapping the kinetic barriers of a Large RNA molecule's folding landscape

artículo científico publicado en 2014

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

artículo científico publicado en 2011

Membrane RNAs in bacteria

artículo científico publicado en 2011

Modeling protein recognition of carbohydrates

artículo científico publicado en 2005

Molecular biology: A second layer of information in RNA.

artículo científico publicado en 2014

Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR

artículo científico publicado en 2015

On Adaptivity in Coarse Grain Molecular Dynamics

article

On the characterization of carbon blacks by various techniques

On the characterization of industrial carbon blacks by physico-chemical and by empirical parameters

Polysaccharide recognition by surfactant protein D: novel interactions of a C-type lectin with nonterminal glucosyl residues

artículo científico

Primary and Secondary Sequence Structure Requirements for Recognition and Discrimination of Target RNAs by Pseudomonas aeruginosa RsmA and RsmF.

artículo científico publicado en 2016

RNA folding: A clear path to RNA catalysis

artículo científico publicado en 2015

RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways

artículo científico publicado en 2011

Rapid Quantification and Analysis of Kinetic •OH Radical Footprinting Data Using SAFA ⬇️

artículo científico publicado el 17 de noviembre de 2009

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

artículo científico publicado en 2005

Selecting against accidental RNA interactions

artículo científico publicado en 2016

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

artículo científico publicado en 2008

Sharing and archiving nucleic acid structure mapping data

artículo científico publicado en 2011

Single Molecule Cluster Analysis dissects splicing pathway conformational dynamics

artículo científico publicado en 2015

Small RNAs derived from lncRNA RNase MRP have gene-silencing activity relevant to human cartilage-hair hypoplasia

artículo científico publicado en 2013

Solution and micelle-bound structures of tachyplesin I and its active aromatic linear derivatives

artículo científico publicado en 2002

Specific empirical free energy function for automated docking of carbohydrates to proteins

artículo científico publicado en 2003

Strategies for articulated multibody-based adaptive coarse grain simulation of RNA.

artículo científico publicado en 2011

Structural effects of linkage disequilibrium on the transcriptome

artículo científico publicado en 2011

Structural inference of native and partially folded RNA by high-throughput contact mapping

artículo científico publicado en 2008

Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA.

artículo científico publicado en 2017

The paradoxical behavior of a highly structured misfolded intermediate in RNA folding

artículo científico publicado en 2006

The potential of the riboSNitch in personalized medicine

artículo científico publicado en 2015

The role of cation-pi interactions in biomolecular association. Design of peptides favoring interactions between cationic and aromatic amino acid side chains

artículo científico publicado en 2001

The structure of the influenza A virus genome

artículo científico publicado en 2019

Toward interoperable bioscience data

artículo científico publicado en 2012

Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution

artículo científico publicado en 2017

Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns

artículo científico publicado en 2013

Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking

artículo científico publicado en 2004

Water adsorption in carbons described by the dubinin–astakhov and dubinin–serpinski equations

article by Fritz Stoeckli et al published 1994 in Journal of the Chemical Society, Faraday Transactions

Lista de obras de Alain Laederach

A Functional riboSNitch in the 3' Untranslated Region of FKBP5 Alters MicroRNA-320a Binding Efficiency and Mediates Vulnerability to Chronic Post-Traumatic Pain

A novel application of pattern recognition for accurate SNP and indel discovery from high-throughput data: targeted resequencing of the glucocorticoid receptor co-chaperone FKBP5 in a Caucasian population

A pipeline for computational design of novel RNA-like topologies.

A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure

Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease

An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression

Arg343 in human surfactant protein D governs discrimination between glucose and N-acetylglucosamine ligands

Automated docking of alpha-(1-->4)- and alpha-(1-->6)-linked glucosyl trisaccharides and maltopentaose into the soybean beta-amylase active site.

Automated docking of maltose, 2-deoxymaltose, and maltotetraose into the soybean beta-amylase active site

Classification of RNA structure change by 'gazing' at experimental data

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease

Comparative Visualization of the RNA Suboptimal Conformational Ensemble In Vivo.

Competing modes of self-association in the regulatory domains of Bruton's tyrosine kinase: Intramolecular contact versus asymmetric homodimerization

Competing modes of self-association in the regulatory domains of Bruton's tyrosine kinase: intramolecular contact versus asymmetric homodimerization

Computational functional genomics

Coplanar and coaxial orientations of RNA bases and helices

Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark

Determinants of intra versus intermolecular self-association within the regulatory domains of Rlk and Itk.

Disease-associated mutations that alter the RNA structural ensemble

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding

Distinct responses to rare codons in select <i>Drosophila</i> tissues

Energy barriers, pathways, and dynamics during folding of large, multidomain RNAs

Evaluating our ability to predict the structural disruption of RNA by SNPs ⬇️

Evaluation of the information content of RNA structure mapping data for secondary structure prediction

Evolutionary evidence for alternative structure in RNA sequence co-variation

Exhaustive Enumeration of Kinetic Model Topologies for the Analysis of Time-Resolved RNA Folding

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper

Impact of RNA structure on ZFP36L2 interaction with luteinizing hormone receptor mRNA.

Increased Transcript Complexity in Genes Associated with Chronic Obstructive Pulmonary Disease

Informatics challenges in structured RNA.

Ligand specificity modulated by prolyl imide bond Cis/Trans isomerization in the Itk SH2 domain: a quantitative NMR study

Local RNA structural changes induced by crystallization are revealed by SHAPE

Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

Mapping the kinetic barriers of a Large RNA molecule's folding landscape

Meeting report of the RNA Ontology Consortium January 8-9, 2011.

Membrane RNAs in bacteria

Modeling protein recognition of carbohydrates

Molecular biology: A second layer of information in RNA.

Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR

On Adaptivity in Coarse Grain Molecular Dynamics

On the characterization of carbon blacks by various techniques

On the characterization of industrial carbon blacks by physico-chemical and by empirical parameters

Polysaccharide recognition by surfactant protein D: novel interactions of a C-type lectin with nonterminal glucosyl residues

Primary and Secondary Sequence Structure Requirements for Recognition and Discrimination of Target RNAs by Pseudomonas aeruginosa RsmA and RsmF.

RNA folding: A clear path to RNA catalysis

RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways

Rapid Quantification and Analysis of Kinetic •OH Radical Footprinting Data Using SAFA ⬇️

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

Selecting against accidental RNA interactions

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

Sharing and archiving nucleic acid structure mapping data

Single Molecule Cluster Analysis dissects splicing pathway conformational dynamics

Small RNAs derived from lncRNA RNase MRP have gene-silencing activity relevant to human cartilage-hair hypoplasia

Solution and micelle-bound structures of tachyplesin I and its active aromatic linear derivatives

Specific empirical free energy function for automated docking of carbohydrates to proteins

Strategies for articulated multibody-based adaptive coarse grain simulation of RNA.

Structural effects of linkage disequilibrium on the transcriptome

Structural inference of native and partially folded RNA by high-throughput contact mapping

Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA.

The paradoxical behavior of a highly structured misfolded intermediate in RNA folding

The potential of the riboSNitch in personalized medicine

The role of cation-pi interactions in biomolecular association. Design of peptides favoring interactions between cationic and aromatic amino acid side chains

The structure of the influenza A virus genome

Toward interoperable bioscience data

Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution

Understanding the role of three-dimensional topology in determining the folding intermediates of group I introns

Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking

Water adsorption in carbons described by the dubinin–astakhov and dubinin–serpinski equations