Lista de obras - Torgeir R Hvidsten - Dominio Público Uruguay

A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

artículo científico publicado en 2009

A metabolite roadmap of the wood-forming tissue in Populus tremula

artículo científico publicado en 2020

A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.

artículo científico publicado en 2018

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins

artículo científico publicado en 2003

A segmental maximum a posteriori approach to genome-wide copy number profiling.

artículo científico publicado en 2008

A systems biology model of the regulatory network in Populusleaves reveals interacting regulators and conserved regulation ⬇️

artículo científico publicado el 13 de enero de 2011

Activity-dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen

artículo científico publicado en 2011

AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.

artículo científico publicado en 2017

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering ⬇️

artículo científico publicado en 2010

Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica.

artículo científico publicado en 2013

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning

artículo científico publicado en 2011

Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress

artículo científico publicado en 2012

ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa

artículo científico publicado en 2014

Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication

artículo científico publicado en 2021

Differential gene expression in the olfactory bulb following exposure to the olfactory toxicant 2,6-dichlorophenyl methylsulphone and its 2,5-dichlorinated isomer in mice

artículo científico publicado en 2007

Discovering regulatory binding-site modules using rule-based learning.

artículo científico publicado en 2005

Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen

artículo científico publicado en 2018

Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae

artículo científico publicado en 2019

Extracting functional trends from whole genome duplication events using comparative genomics

artículo científico publicado en 2016

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus

artículo científico publicado en 2018

Gene co-expression network connectivity is an important determinant of selective constraint

artículo científico publicado en 2017

Gene expression trends and protein features effectively complement each other in gene function prediction

artículo científico

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures

artículo científico publicado en 2006

Genome interplay in the grain transcriptome of hexaploid bread wheat

artículo científico publicado en 2014

Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes

artículo científico publicado en 2020

Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space.

artículo científico publicado en 2008

Leaf shape in Populus tremula is a complex, omnigenic trait

scientific article published on 13 October 2020

Learning rule-based models of biological process from gene expression time profiles using gene ontology.

artículo científico

Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon.

artículo científico publicado en 2018

Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

artículo científico publicado en 2017

Local descriptors of protein structure: a systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

artículo científico publicado en 2009

Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm.

artículo científico publicado en 2005

Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

artículo científico publicado en 2020

NorWood: a gene expression resource for evo-devo studies of conifer wood development

artículo científico publicado en 2017

OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants

artículo científico publicado en 2013

Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication.

artículo científico publicado en 2018

Populus tremula (European aspen) shows no evidence of sexual dimorphism.

artículo científico publicado en 2014

Predicting gene ontology biological process from temporal gene expression patterns.

artículo científico

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development

artículo científico publicado en 2016

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

artículo científico publicado en 2007

SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

scientific article published on 02 September 2019

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

artículo científico publicado en 2015

Subfunctionalization versus neofunctionalization after whole-genome duplication

artículo científico publicado en 2018

Synergy: a web resource for exploring gene regulation in Synechocystis sp. PCC6803

artículo científico publicado en 2014

The Atlantic salmon genome provides insights into rediploidization

artículo científico publicado en 2016

The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication

article

The Norway spruce genome sequence and conifer genome evolution

artículo científico publicado en 2013

The Plant Genome Integrative Explorer Resource: PlantGenIE.org

artículo científico publicado en 2015

Towards integration of population and comparative genomics in forest trees

artículo científico publicado en 2016

Using local gene expression similarities to discover regulatory binding site modules

artículo científico publicado en 2006

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

artículo científico publicado en 2009

What can cold‐induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?

artículo científico publicado en 2022

Lista de obras de Torgeir R Hvidsten

A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.

A metabolite roadmap of the wood-forming tissue in Populus tremula

A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.

A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins

A segmental maximum a posteriori approach to genome-wide copy number profiling.

A systems biology model of the regulatory network in Populusleaves reveals interacting regulators and conserved regulation ⬇️

Activity-dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen

AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.

Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering ⬇️

Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica.

Classification of microarrays; synergistic effects between normalization, gene selection and machine learning

Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress

ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa

Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication

Differential gene expression in the olfactory bulb following exposure to the olfactory toxicant 2,6-dichlorophenyl methylsulphone and its 2,5-dichlorinated isomer in mice

Discovering regulatory binding-site modules using rule-based learning.

Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen

Evolution of Cold Acclimation and Its Role in Niche Transition in the Temperate Grass Subfamily Pooideae

Extracting functional trends from whole genome duplication events using comparative genomics

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus

Gene co-expression network connectivity is an important determinant of selective constraint

Gene expression trends and protein features effectively complement each other in gene function prediction

Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures

Genome interplay in the grain transcriptome of hexaploid bread wheat

Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes

Interaction model based on local protein substructures generalizes to the entire structural enzyme-ligand space.

Leaf shape in Populus tremula is a complex, omnigenic trait

Learning rule-based models of biological process from gene expression time profiles using gene ontology.

Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon.

Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

Local descriptors of protein structure: a systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

Markers of adenocarcinoma characteristic of the site of origin: development of a diagnostic algorithm.

Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

NorWood: a gene expression resource for evo-devo studies of conifer wood development

OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants

Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication.

Populus tremula (European aspen) shows no evidence of sexual dimorphism.

Predicting gene ontology biological process from temporal gene expression patterns.

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development

Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors

SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

Subfunctionalization versus neofunctionalization after whole-genome duplication

Synergy: a web resource for exploring gene regulation in Synechocystis sp. PCC6803

The Atlantic salmon genome provides insights into rediploidization

The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication

The Norway spruce genome sequence and conifer genome evolution

The Plant Genome Integrative Explorer Resource: PlantGenIE.org

Towards integration of population and comparative genomics in forest trees

Using local gene expression similarities to discover regulatory binding site modules

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

What can cold‐induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?