Lista de obras - Tom Metz - Dominio Público Uruguay

<i>Chespa</i>: Streamlining Expansive Chemical Space Evaluation of Molecular Sets

artículo científico publicado en 2020

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection

artículo científico publicado en 2013

A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry ⬇️

artículo científico publicado en 2014

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

artículo científico publicado en 2012

A compendium of multi-omics data illuminating host responses to lethal human virus infections

artículo científico publicado en 2024

A comprehensive collection of systems biology data characterizing the host response to viral infection.

artículo científico publicado en 2014

A global lipid map defines a network essential for Zika virus replication

artículo científico publicado en 2020

A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants

artículo científico publicado en 2022

A multi-omic systems approach to elucidating Yersinia virulence mechanisms.

artículo científico publicado en 2012

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses

artículo científico publicado en 2013

A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease

artículo científico publicado en 2009

A post-Amadori inhibitor pyridoxamine also inhibits chemical modification of proteins by scavenging carbonyl intermediates of carbohydrate and lipid degradation

artículo científico publicado en 2001

A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases

artículo científico publicado en 2021

A reversed-phase capillary ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) method for comprehensive top-down/bottom-up lipid profiling

artículo científico publicado en 2012

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

artículo científico publicado en 2009

An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells

scientific article published on 22 May 2020

Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry

artículo científico publicado en 2008

Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides

artículo científico publicado en 2007

Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.

artículo científico publicado en 2007

Application of the accurate mass and time tag approach in studies of the human blood lipidome.

scientific article published on 07 May 2008

Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data

scientific article published on 09 November 2020

Automated 20 kpsi RPLC-MS and MS/MS with Chromatographic Peak Capacities of 1000−1500 and Capabilities in Proteomics and Metabolomics

scientific article published in 2005

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements

artículo científico publicado en 2014

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

artículo científico publicado en 2014

Capillary LC Coupled with High-Mass Measurement Accuracy Mass Spectrometry for Metabolic Profiling

scientific article published in 2007

Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS

artículo científico publicado en 2006

Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging.

artículo científico publicado en 2017

Chelation: a fundamental mechanism of action of AGE inhibitors, AGE breakers, and other inhibitors of diabetes complications

artículo científico publicado en 2012

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

artículo científico publicado en 2010

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis

artículo científico publicado en 2015

Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects

artículo científico publicado en 2011

DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data

artículo científico publicado en 2022

Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae ⬇️

artículo científico publicado en 2014

Deletion of GPR40 impairs glucose-induced insulin secretion in vivo in mice without affecting intracellular fuel metabolism in islets

scientific article published on 31 August 2009

Dengue virus infection perturbs lipid homeostasis in infected mosquito cells

artículo científico publicado en 2012

Development of a fibrinogen-specific sandwich enzyme-linked immunosorbent assay microarray assay for distinguishing between blood plasma and serum samples

artículo científico publicado en 2011

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

artículo científico publicado en 2015

Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics

artículo científico publicado en 2012

Effect of antioxidants and ACE inhibition on chemical modification of proteins and progression of nephropathy in the streptozotocin diabetic rat.

artículo científico publicado en 2004

Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content

artículo científico publicado en 2007

Enrichment and analysis of nonenzymatically glycated peptides: boronate affinity chromatography coupled with electron-transfer dissociation mass spectrometry

artículo científico publicado en 2007

Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples

scientific article published on 20 August 2019

Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics

artículo científico publicado en 2011

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

artículo científico publicado en 2013

High Resolution Separations and Improved Ion Production and Transmission in Metabolomics

artículo científico publicado en 2008

ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries

scientific article published on 06 March 2019

Improved methods for the enrichment and analysis of glycated peptides

scientific article published on December 2008

Improved quality control processing of peptide-centric LC-MS proteomics data

artículo científico publicado en 2011

In silico identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids.

artículo científico publicado en 2012

In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing

scientific article published on 26 June 2019

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

artículo científico publicado en 2016

Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples

artículo científico publicado en 2019

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

artículo científico publicado en 2018

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses

artículo científico publicado en 2016

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling

artículo científico publicado en 2017

Making Broad Proteome Protein Measurements in 1−5 min Using High-Speed RPLC Separations and High-Accuracy Mass Measurements

artículo científico publicado en 2005

Mass Spectrometry Adduct Calculator

artículo científico publicado en 2021

Mass spectrometric analysis of glucose-modified ribonuclease

artículo científico publicado en 2003

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

artículo científico publicado en 2013

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

artículo científico publicado en 2021

Metabolomic response of human skin tissue to low dose ionizing radiation

artículo científico publicado en 2012

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

artículo científico publicado en 2012

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

artículo científico publicado en 2017

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis

artículo científico publicado en 2013

New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data

scientific article published on 06 February 2019

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

artículo científico publicado en 2014

Performing comparative peptidomics analyses of Salmonella from different growth conditions

artículo científico publicado en 2010

Perturbations in the lipid profile of individuals with newly diagnosed type 1 diabetes mellitus: lipidomics analysis of a Diabetes Antibody Standardization Program sample subset

artículo científico publicado en 2010

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

artículo científico publicado en 2014

Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers

artículo científico publicado en 2020

Proteomic analysis of arginine adducts on glyoxal-modified ribonuclease.

artículo científico publicado en 2004

Proteomic analysis of the site specificity of glycation and carboxymethylation of ribonuclease

artículo científico publicado en 2003

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

artículo científico publicado en 2015

Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes

artículo científico publicado en 2008

Pyridoxamine traps intermediates in lipid peroxidation reactions in vivo: evidence on the role of lipids in chemical modification of protein and development of diabetic complications

artículo científico publicado en 2003

Pyridoxamine, an inhibitor of advanced glycation and lipoxidation reactions: a novel therapy for treatment of diabetic complications

artículo científico publicado en 2003

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

artículo científico publicado en 2018

Quantum Chemistry Calculations for Metabolomics

artículo científico publicado en 2021

Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.

artículo científico publicado en 2018

Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells

artículo científico publicado en 2013

Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

artículo científico publicado en 2015

Role of lipids in chemical modification of proteins and development of complications in diabetes

artículo científico publicado en 2003

SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes

artículo científico publicado en 2019

Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes ⬇️

artículo científico publicado en 2013

Separation and classification of lipids using differential ion mobility spectrometry

artículo científico publicado en 2011

Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies

artículo científico publicado en 2013

Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes

artículo científico publicado en 2012

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

artículo científico publicado en 2016

Silymarin Suppresses Cellular Inflammation By Inducing Reparative Stress Signaling

artículo científico publicado en 2015

Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics

artículo científico publicado en 2023

Simulated Night-Shift Schedule Disrupts the Plasma Lipidome and Reveals Early Markers of Cardiovascular Disease Risk

artículo científico publicado en 2022

Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland

artículo científico publicado en 2022

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

artículo científico publicado en 2013

Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network

scientific article published on 05 December 2019

Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling

artículo científico publicado en 2013

Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis

artículo científico publicado en 2011

Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.

artículo científico publicado en 2007

Technologies and approaches to elucidate and model the virulence program of salmonella

artículo científico publicado en 2011

Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics

artículo científico publicado en 2010

Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery

artículo científico publicado en 2020

The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation

artículo científico publicado en 2014

The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery

artículo científico publicado en 2007

The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes

artículo científico publicado en 2019

The succinated proteome

artículo científico publicado en 2013

Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry.

artículo científico publicado en 2016

Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites

artículo científico publicado en 2019

yippee like 3 (ypel3) is a novel gene required for myelinating and perineurial glia development

artículo científico publicado en 2020

Lista de obras de Tom Metz

<i>Chespa</i>: Streamlining Expansive Chemical Space Evaluation of Molecular Sets

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection

A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry ⬇️

A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.

A compendium of multi-omics data illuminating host responses to lethal human virus infections

A comprehensive collection of systems biology data characterizing the host response to viral infection.

A global lipid map defines a network essential for Zika virus replication

A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants

A multi-omic systems approach to elucidating Yersinia virulence mechanisms.

A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses

A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease

A post-Amadori inhibitor pyridoxamine also inhibits chemical modification of proteins by scavenging carbonyl intermediates of carbohydrate and lipid degradation

A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases

A reversed-phase capillary ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) method for comprehensive top-down/bottom-up lipid profiling

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells

Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry

Application of electron transfer dissociation mass spectrometry in analyses of non-enzymatically glycated peptides

Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.

Application of the accurate mass and time tag approach in studies of the human blood lipidome.

Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data

Automated 20 kpsi RPLC-MS and MS/MS with Chromatographic Peak Capacities of 1000−1500 and Capabilities in Proteomics and Metabolomics

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Capillary LC Coupled with High-Mass Measurement Accuracy Mass Spectrometry for Metabolic Profiling

Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS

Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging.

Chelation: a fundamental mechanism of action of AGE inhibitors, AGE breakers, and other inhibitors of diabetes complications

Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis

Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects

DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data

Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae ⬇️

Deletion of GPR40 impairs glucose-induced insulin secretion in vivo in mice without affecting intracellular fuel metabolism in islets

Dengue virus infection perturbs lipid homeostasis in infected mosquito cells

Development of a fibrinogen-specific sandwich enzyme-linked immunosorbent assay microarray assay for distinguishing between blood plasma and serum samples

Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics

Effect of antioxidants and ACE inhibition on chemical modification of proteins and progression of nephropathy in the streptozotocin diabetic rat.

Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content

Enrichment and analysis of nonenzymatically glycated peptides: boronate affinity chromatography coupled with electron-transfer dissociation mass spectrometry

Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples

Formation of dehydroalanine from mimosine and cysteine: artifacts in gas chromatography/mass spectrometry based metabolomics

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

High Resolution Separations and Improved Ion Production and Transmission in Metabolomics

ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries

Improved methods for the enrichment and analysis of glycated peptides

Improved quality control processing of peptide-centric LC-MS proteomics data

In silico identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids.

In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling

Making Broad Proteome Protein Measurements in 1−5 min Using High-Speed RPLC Separations and High-Accuracy Mass Measurements

Mass Spectrometry Adduct Calculator

Mass spectrometric analysis of glucose-modified ribonuclease

Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments

Metabolomic response of human skin tissue to low dose ionizing radiation

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis

New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells

P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data

Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.

Performing comparative peptidomics analyses of Salmonella from different growth conditions

Perturbations in the lipid profile of individuals with newly diagnosed type 1 diabetes mellitus: lipidomics analysis of a Diabetes Antibody Standardization Program sample subset

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions

Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers

Proteomic analysis of arginine adducts on glyoxal-modified ribonuclease.

Proteomic analysis of the site specificity of glycation and carboxymethylation of ribonuclease

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

Proteomic profiling of nonenzymatically glycated proteins in human plasma and erythrocyte membranes

Pyridoxamine traps intermediates in lipid peroxidation reactions in vivo: evidence on the role of lipids in chemical modification of protein and development of diabetic complications

Pyridoxamine, an inhibitor of advanced glycation and lipoxidation reactions: a novel therapy for treatment of diabetic complications

QC-ART: A tool for real-time quality control assessment of mass spectrometry-based proteomics data

Quantum Chemistry Calculations for Metabolomics