Lista de obras - Mark Baker - Dominio Público Uruguay

A Combination of Immobilised pH Gradients Improves Membrane Proteomics

artículo científico publicado en 2008

A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes.

artículo científico publicado en 2017

A Transferrin Triggered Pathway for Highly Targeted Delivery of Graphene-Based Nanodrugs to Treat Choroidal Melanoma

artículo científico publicado en 2018

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers.

artículo científico publicado en 2015

A novel, cost-effective and efficient chicken egg IgY purification procedure

artículo científico publicado en 2012

A site for direct integrin αvβ6·uPAR interaction from structural modelling and docking.

artículo científico publicado en 2014

Accelerating the search for the missing proteins in the human proteome

artículo científico publicado en 2017

Amplified protein sensing using deep purple fluorophores on homogeneous Au substrates

artículo científico publicado en 2007

An improved method for the detection and enrichment of low-abundant membrane and lipid raft-residing proteins

artículo científico publicado en 2012

An optimized approach for enrichment of glycoproteins from cell culture lysates using native multi-lectin affinity chromatography

article

Analytical validation considerations of multiplex mass-spectrometry-based proteomic platforms for measuring protein biomarkers

artículo científico publicado en 2014

Biorepository regulatory frameworks: building parallel resources that both promote scientific investigation and protect human subjects

artículo científico publicado en 2014

Changes in gene expressions elicited by physiological concentrations of genistein on human endometrial cancer cells.

artículo científico publicado en 2006

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

artículo científico publicado en 2014

Characterization of the rat liver membrane proteome using peptide immobilized pH gradient isoelectric focusing.

artículo científico publicado en 2008

Chicken immune responses to variations in human plasma protein ratios: a rationale for polyclonal IgY ultraimmunodepletion

scientific article published on 14 November 2012

Chromosome 7-centric analysis of proteomics data from a panel of human colon carcinoma cell lines

artículo científico publicado en 2012

Clinical proteomics stretch goals: EuPA 2012 roundtable report.

artículo científico publicado en 2013

Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.

artículo científico publicado en 2015

Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and α-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines.

artículo científico publicado en 2013

Comparing SILAC and two-dimensional gel electrophoresis image analysis for profiling urokinase plasminogen activator signaling in ovarian cancer cells.

artículo científico publicado en 2007

Comprehensive N-glycome profiling of cultured human epithelial breast cells identifies unique secretome N-glycosylation signatures enabling tumorigenic subtype classification

artículo científico publicado en 2014

Correlations between integrin ανβ6 expression and clinico-pathological features in stage B and stage C rectal cancer

artículo científico publicado en 2014

Crystal structure of the complex of plasminogen activator inhibitor 2 with a peptide mimicking the reactive center loop

artículo científico publicado en 2001

De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data

artículo científico publicado en 2017

Differential proteome expression associated with urokinase plasminogen activator receptor (uPAR) suppression in malignant epithelial cancer.

artículo científico publicado en 2008

Differentiating cells of murine stratified squamous epithelia constitutively express plasminogen activator inhibitor type 2 (PAI-2)

artículo científico publicado en 1998

Elevated plasminogen receptor expression occurs as a degradative phase event in cellular apoptosis

artículo científico publicado en 1999

Epithelial and stromal cell urokinase plasminogen activator receptor expression differentially correlates with survival in rectal cancer stages B and C patients

artículo científico publicado en 2015

Evaluation of endogenous plasma peptide extraction methods for mass spectrometric biomarker discovery

artículo científico publicado en 2007

Exercise and the neutrophil oxidative burst: biological and experimental variability

artículo científico publicado en 1996

Four areas of engagement requiring strengthening in modern proteomics today

artículo científico publicado en 2014

Gene expression of plasminogen activation cascade components in human term gestational tissues with labour onset

scientific article published on 01 January 1998

Guidelines for reporting the use of gel electrophoresis in proteomics.

artículo científico publicado en 2008

High-abundance protein depletion: comparison of methods for human plasma biomarker discovery

scientific article published on 01 January 2010

Homogeneous silver-coated nanoparticle substrates for enhanced fluorescence detection

artículo científico publicado en 2006

How many human proteoforms are there?

artículo científico publicado en 2018

Human Prestin: A Candidate PE1 Protein Lacking Stringent Mass Spectrometric Evidence?

artículo científico publicado en 2017

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

artículo científico publicado en 2016

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

scientific article published on 21 October 2019

Identification and expression of a novel marsupial cathelicidin from the tammar wallaby (Macropus eugenii).

artículo científico publicado en 2008

Immunological Detection of Conformational Neoepitopes Associated with the Serpin Activity of Plasminogen Activator Inhibitor Type-2

scientific article published on 01 May 1998

Improved membrane proteomics coverage of human embryonic stem cells by peptide IPG-IEF.

artículo científico

In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry

scientific article published on 22 May 2019

In-depth N-glycome profiling of paired colorectal cancer and non-tumorigenic tissues reveals cancer-, stage- and EGFR-specific protein N-glycosylation.

artículo científico publicado en 2015

Integrin αvβ6 sets the stage for colorectal cancer metastasis.

artículo científico

Interaction between the P14 residue and strand 2 of beta-sheet B is critical for reactive center loop insertion in plasminogen activator inhibitor-2.

artículo científico publicado en 2001

Is isolation of comprehensive human plasma peptidomes an achievable quest?

artículo científico

Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor.

scientific article published on 18 February 2010

Localization of plasminogen activator inhibitor type 2 (PAI-2) in hair and nail: implications for terminal differentiation.

artículo científico publicado en 1998

Loss of cell viability dramatically elevates cell surface plasminogen binding and activation

artículo científico publicado en 1998

Mass Spectrometry-Based Analysis for the Discovery and Validation of Potential Colorectal Cancer Stool Biomarkers.

artículo científico publicado en 2016

Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

artículo científico publicado en 2019

Mass spectrometry-based protein identification in proteomics-a review

artículo científico publicado en 2020

Mechanical stretch: physiological and pathological implications for human vascular endothelial cells

artículo científico publicado en 2015

Micromethods in single muscle fibers. 1. Determination of catalase and superoxide dismutase

artículo científico publicado en 1988

Micromethods in single muscle fibers. 2. Determination of glutathione reductase and glutathione peroxidase

artículo científico publicado en 1988

Multiphoton fluorescence lifetime imaging microscopy reveals free-to-bound NADH ratio changes associated with metabolic inhibition.

artículo científico publicado en 2014

Mutation analysis of CDP, TP53, and KRAS in uterine leiomyomas

artículo científico publicado en 2003

Nanochannel pH gradient electrofocusing of proteins.

artículo científico publicado en 2013

Non-specific binding of monoclonal human erythropoietin antibody AE7A5 to Escherichia coli and Saccharomyces cerevisiae proteins.

artículo científico publicado en 2007

Occupancy of the cancer cell urokinase receptor (uPAR): effects of acid elution and exogenous uPA on cell surface urokinase (uPA)

artículo científico publicado en 1992

Oncoproteomics: Current status and future opportunities

scientific article published on 06 June 2019

Overexpression of alpha(v)beta6 integrin in serous epithelial ovarian cancer regulates extracellular matrix degradation via the plasminogen activation cascade

scientific journal article

Overexpression of αvβ6 Integrin Alters the Colorectal Cancer Cell Proteome in Favor of Elevated Proliferation and a Switching in Cellular Adhesion That Increases Invasion ⬇️

artículo científico publicado el 24 de mayo de 2013

Pathology, proteomics and the pathway to personalised medicine.

artículo científico publicado en 2018

Plasminogen activator inhibitor 2 (PAI-2) is not inactivated by exposure to oxidants which can be released from activated neutrophils

artículo científico publicado en 1990

Plasminogen fragmentation and increased production of extracellular matrix-degrading proteinases are associated with serous epithelial ovarian cancer progression

artículo científico publicado en 2004

Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel

scientific article published on 28 August 2019

Preanalytical Stability of Antibodies to Pathogenic Antigens.

artículo científico publicado en 2017

Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project

artículo científico publicado en 2018

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project

scientific article published on 13 September 2019

Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.

artículo científico

Proteomic analysis of human plasma: Failure of centrifugal ultrafiltration to remove albumin and other high molecular weight proteins ⬇️

artículo científico publicado el 1 de diciembre de 2001

Proteomic comparison of colorectal tumours and non-neoplastic mucosa from paired patient samples using iTRAQ mass spectrometry.

artículo científico

Proteomic identification of lynchpin urokinase plasminogen activator receptor protein interactions associated with epithelial cancer malignancy.

artículo científico publicado en 2007

Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer

artículo científico publicado en 2019

Proteomics and the microbiome: pitfalls and potential

artículo científico publicado en 2018

Proteomics of Huntington's disease-affected human embryonic stem cells reveals an evolving pathology involving mitochondrial dysfunction and metabolic disturbances.

artículo científico publicado en 2014

Quantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in CRC progression and metastasis.

artículo científico publicado en 2015

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project

artículo científico publicado en 2015

Rapid purification method for the 26S proteasome from the filamentous fungus Trichoderma reesei.

artículo científico publicado en 2009

Rat liver membrane glycoproteome: enrichment by phase partitioning and glycoprotein capture

artículo científico publicado en 2009

Recent findings from the Human Proteome Project: opening the mass spectrometry toolbox to advance cancer diagnosis, surveillance and treatment.

artículo científico

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles)

artículo científico publicado en 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam Principles).

artículo científico publicado en 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

artículo científico publicado en 2011

Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles).

artículo científico publicado en 2011

Role of Multiomics Data to Understand Host-Pathogen Interactions in COVID-19 Pathogenesis

publication published on 11 January 2021

Serpins in the human hair follicle

artículo científico publicado en 2000

Standard guidelines for the chromosome-centric human proteome project

artículo científico publicado en 2012

Systems Proteomics View of the Endogenous Human Claudin Protein Family

artículo científico publicado en 2016

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains

artículo científico publicado en 2018

Tandem ion exchange fractionation of chicken egg white reveals the presence of proliferative bioactivity

artículo científico publicado en 2013

The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard

artículo científico publicado en 2010

The HUPO initiative on Model Organism Proteomes, iMOP.

artículo científico publicado en 2012

The development of multiple reaction monitoring assays for liver-derived plasma proteins

scientific article published on 16 November 2007

The effect of pH on the conversion of superoxide to hydroxyl free radicals

scientific article published on 01 October 1984

The effect of pH on yields of hydroxyl radicals produced from superoxide by potential biological iron chelators

scientific article published on 01 May 1986

The effects of free radical scavengers on arachidonic acid metabolism by ovine placental microsomes ⬇️

artículo científico publicado el 1 de enero de 1991

The human ENO1 gene product (recombinant human α-enolase) displays characteristics required for a plasminogen binding protein

artículo científico publicado en 1997

The inhibitory action of oxygen radical scavengers on proteinuria and glomerular heparan sulphate loss in the isolated perfused kidney

artículo científico publicado en 1990

The lectin riddle: glycoproteins fractionated from complex mixtures have similar glycomic profiles

artículo científico publicado en 2010

The localization of the relaxed form of plasminogen activator inhibitor type 2 in human gingival tissues

artículo científico publicado en 2001

The nuclear proteome and DNA-binding fraction of human Raji lymphoma cells

artículo científico publicado en 2007

The oxidant hypochlorite (OCl−), a product of the myeloperoxidase system, degrades articular cartilage proteoglycan aggregate ⬇️

artículo científico publicado el 1 de enero de 1991

The plasminogen activator inhibitor-2 gene is not required for normal murine development or survival

artículo científico publicado en 1999

Tissue and plasma proteomics for early stage cancer detection

scientific article published on 01 December 2018

Topological localization of plasminogen activator inhibitor type 2

artículo científico publicado en 2000

Ultradepletion of human plasma using chicken antibodies: a proof of concept study

artículo científico publicado en 2013

Unlocking the puzzling biology of the black Périgord truffle Tuber melanosporum.

artículo científico publicado en 2013

iSwathX: an interactive web-based application for extension of DIA peptide reference libraries

scientific article published on 01 February 2019

Lista de obras de Mark Baker

A Combination of Immobilised pH Gradients Improves Membrane Proteomics

A Systematic Bioinformatics Approach to Identify High Quality Mass Spectrometry Data and Functionally Annotate Proteins and Proteomes.

A Transferrin Triggered Pathway for Highly Targeted Delivery of Graphene-Based Nanodrugs to Treat Choroidal Melanoma

A high-stringency blueprint of the human proteome

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers.

A novel, cost-effective and efficient chicken egg IgY purification procedure

A site for direct integrin αvβ6·uPAR interaction from structural modelling and docking.

Accelerating the search for the missing proteins in the human proteome

Amplified protein sensing using deep purple fluorophores on homogeneous Au substrates

An improved method for the detection and enrichment of low-abundant membrane and lipid raft-residing proteins

An optimized approach for enrichment of glycoproteins from cell culture lysates using native multi-lectin affinity chromatography

Analytical validation considerations of multiplex mass-spectrometry-based proteomic platforms for measuring protein biomarkers

Biorepository regulatory frameworks: building parallel resources that both promote scientific investigation and protect human subjects

Changes in gene expressions elicited by physiological concentrations of genistein on human endometrial cancer cells.

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

Characterization of the rat liver membrane proteome using peptide immobilized pH gradient isoelectric focusing.

Chicken immune responses to variations in human plasma protein ratios: a rationale for polyclonal IgY ultraimmunodepletion

Chromosome 7-centric analysis of proteomics data from a panel of human colon carcinoma cell lines

Clinical proteomics stretch goals: EuPA 2012 roundtable report.

Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.

Comparative N-glycan profiling of colorectal cancer cell lines reveals unique bisecting GlcNAc and α-2,3-linked sialic acid determinants are associated with membrane proteins of the more metastatic/aggressive cell lines.

Comparing SILAC and two-dimensional gel electrophoresis image analysis for profiling urokinase plasminogen activator signaling in ovarian cancer cells.

Comprehensive N-glycome profiling of cultured human epithelial breast cells identifies unique secretome N-glycosylation signatures enabling tumorigenic subtype classification

Correlations between integrin ανβ6 expression and clinico-pathological features in stage B and stage C rectal cancer

Crystal structure of the complex of plasminogen activator inhibitor 2 with a peptide mimicking the reactive center loop

De Novo Peptide Sequencing: Deep Mining of High-Resolution Mass Spectrometry Data

Differential proteome expression associated with urokinase plasminogen activator receptor (uPAR) suppression in malignant epithelial cancer.

Differentiating cells of murine stratified squamous epithelia constitutively express plasminogen activator inhibitor type 2 (PAI-2)

Elevated plasminogen receptor expression occurs as a degradative phase event in cellular apoptosis

Epithelial and stromal cell urokinase plasminogen activator receptor expression differentially correlates with survival in rectal cancer stages B and C patients

Evaluation of endogenous plasma peptide extraction methods for mass spectrometric biomarker discovery

Exercise and the neutrophil oxidative burst: biological and experimental variability

Four areas of engagement requiring strengthening in modern proteomics today

Gene expression of plasminogen activation cascade components in human term gestational tissues with labour onset

Guidelines for reporting the use of gel electrophoresis in proteomics.

High-abundance protein depletion: comparison of methods for human plasma biomarker discovery

Homogeneous silver-coated nanoparticle substrates for enhanced fluorescence detection

How many human proteoforms are there?

Human Prestin: A Candidate PE1 Protein Lacking Stringent Mass Spectrometric Evidence?

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

Identification and expression of a novel marsupial cathelicidin from the tammar wallaby (Macropus eugenii).

Immunological Detection of Conformational Neoepitopes Associated with the Serpin Activity of Plasminogen Activator Inhibitor Type-2

Improved membrane proteomics coverage of human embryonic stem cells by peptide IPG-IEF.

In Silico Peptide Repertoire of Human Olfactory Receptor Proteomes on High-Stringency Mass Spectrometry

In-depth N-glycome profiling of paired colorectal cancer and non-tumorigenic tissues reveals cancer-, stage- and EGFR-specific protein N-glycosylation.

Integrin αvβ6 sets the stage for colorectal cancer metastasis.

Interaction between the P14 residue and strand 2 of beta-sheet B is critical for reactive center loop insertion in plasminogen activator inhibitor-2.

Is isolation of comprehensive human plasma peptidomes an achievable quest?

Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor.

Localization of plasminogen activator inhibitor type 2 (PAI-2) in hair and nail: implications for terminal differentiation.

Loss of cell viability dramatically elevates cell surface plasminogen binding and activation

Mass Spectrometry-Based Analysis for the Discovery and Validation of Potential Colorectal Cancer Stool Biomarkers.

Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data

Mass spectrometry-based protein identification in proteomics-a review

Mechanical stretch: physiological and pathological implications for human vascular endothelial cells

Micromethods in single muscle fibers. 1. Determination of catalase and superoxide dismutase

Micromethods in single muscle fibers. 2. Determination of glutathione reductase and glutathione peroxidase

Multiphoton fluorescence lifetime imaging microscopy reveals free-to-bound NADH ratio changes associated with metabolic inhibition.

Mutation analysis of CDP, TP53, and KRAS in uterine leiomyomas

Nanochannel pH gradient electrofocusing of proteins.

Non-specific binding of monoclonal human erythropoietin antibody AE7A5 to Escherichia coli and Saccharomyces cerevisiae proteins.

Occupancy of the cancer cell urokinase receptor (uPAR): effects of acid elution and exogenous uPA on cell surface urokinase (uPA)

Oncoproteomics: Current status and future opportunities

Overexpression of alpha(v)beta6 integrin in serous epithelial ovarian cancer regulates extracellular matrix degradation via the plasminogen activation cascade

Overexpression of αvβ6 Integrin Alters the Colorectal Cancer Cell Proteome in Favor of Elevated Proliferation and a Switching in Cellular Adhesion That Increases Invasion ⬇️

Pathology, proteomics and the pathway to personalised medicine.

Plasminogen activator inhibitor 2 (PAI-2) is not inactivated by exposure to oxidants which can be released from activated neutrophils

Plasminogen fragmentation and increased production of extracellular matrix-degrading proteinases are associated with serous epithelial ovarian cancer progression

Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel

Preanalytical Stability of Antibodies to Pathogenic Antigens.

Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project

Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.

Proteomic analysis of human plasma: Failure of centrifugal ultrafiltration to remove albumin and other high molecular weight proteins ⬇️

Proteomic comparison of colorectal tumours and non-neoplastic mucosa from paired patient samples using iTRAQ mass spectrometry.

Proteomic identification of lynchpin urokinase plasminogen activator receptor protein interactions associated with epithelial cancer malignancy.

Proteomics Reveals Cell-Surface Urokinase Plasminogen Activator Receptor Expression Impacts Most Hallmarks of Cancer

Proteomics and the microbiome: pitfalls and potential