Lista de obras - Umer Zeeshan Ijaz - Dominio Público Uruguay

16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus

artículo científico publicado en 2018

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated PCR Ribotype 078

artículo científico publicado en 2019

A clinical system for three-dimensional extended-field-of-view ultrasound

artículo científico publicado en 2012

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

artículo científico publicado en 2016

A role for tetracycline selection in the evolution ofClostridium difficilePCR-ribotype 078

A sedimentary ancient DNA approach to elucidate the Labrador Sea paleoceanography over the last ~130,000 years

Alopecia areata is characterized by dysregulation in systemic type 17 and type 2 cytokines, which may contribute to disease-associated psychological morbidity

artículo científico publicado en 2019

An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights

scientific article published on 26 July 2018

An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights

Analysis of 61 exclusive enteral nutrition formulas used in the management of active Crohn's disease-new insights into dietary disease triggers

artículo científico publicado en 2020

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines.

artículo científico publicado en 2016

Bacterial community analysis in upflow multi-layer anaerobic reactor (UMAR) treating high-solids organic wastes

artículo científico publicado en 2017

Bacterial diversity along a 2 600 km river continuum

Bacterial diversity along a 2600 km river continuum

artículo científico publicado en 2015

Bile salt metabolism is not the only factor contributing to Clostridioides (Clostridium) difficile disease severity in the murine model of disease

scientific article published on 02 December 2019

Binning metagenomic contigs by coverage and composition

artículo científico publicado en 2014

Biokinetics of microbial consortia using biogenic sulfur as a novel electron donor for sustainable denitrification

artículo científico publicado en 2018

Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors

artículo científico publicado en 2017

Carboxylic acids production and electrosynthetic microbial community evolution under different CO2 feeding regimens

artículo científico publicado en 2020

Cold adaptation and replicable microbial community development during long-term low-temperature anaerobic digestion treatment of synthetic sewage.

artículo científico publicado en 2018

Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

scientific article published on 10 February 2020

Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use

scholarly article published 1 June 2017

Comparison of Clinical Methods With the Faecal Gluten Immunogenic Peptide to Assess Gluten Intake in Coeliac Disease

artículo científico publicado en 2018

Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use.

artículo científico publicado en 2017

Comprehensive Longitudinal Microbiome Analysis of the Chicken Cecum Reveals a Shift From Competitive to Environmental Drivers and a Window of Opportunity for

artículo científico publicado en 2018

Comprehensive longitudinal microbiome analysis of the chicken cecum reveals a shift from competitive to environmental drivers and a window of opportunity forCampylobacter

Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab

Concentration distribution estimation of fluid through electrical impedance tomography based on interacting multiple model scheme

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

artículo científico publicado en 2019

Dietary Strategies for Maintenance of Clinical Remission in Inflammatory Bowel Diseases: Are We There Yet?

artículo científico publicado en 2020

Differential amplicons for the evaluation of RNA integrity extracted from complex environmental samples

Differential ratio amplicons (Ramp ) for the evaluation of RNA integrity extracted from complex environmental samples

artículo científico publicado en 2018

Directional Algebraic Reconstruction Technique for Electrical Impedance Tomography

scholarly article by Ji Hoon Kim et al published 15 April 2009 in Journal of the Korean Physical Society

Disinfection exhibits systematic impacts on the drinking water microbiome

scientific article published on 20 March 2020

Diversity Converges During Community Assembly In Methanogenic Granules, Suggesting A Biofilm Life-Cycle

Effect of laser irradiation on cell function and its implications in Raman spectroscopy.

artículo científico publicado en 2018

Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

article

Electrical Resistance Imaging of Two-Phase Flow Through Rod Bundles

Electrical resistance imaging of a time-varying interface in stratified flows using an unscented Kalman filter

Estimation of time-dependent heat flux and measurement bias in two-dimensional inverse heat conduction problems

article

Exploration of marine bacterioplankton community assembly mechanisms during chemical dispersant and surfactant‐assisted oil biodegradation

artículo científico publicado en 2021

Extending SEQenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences

artículo científico publicado en 2017

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition

artículo científico publicado en 2015

Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans.

artículo científico publicado en 2018

Galacto-Oligosaccharide has no Effect on Glucose Tolerance, inflammatory Markers or Intestinal Permeability in well-controlled Type 2 Diabetes

Host-microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake

artículo científico publicado en 2016

IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization

artículo científico publicado en 2017

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

artículo científico publicado en 2016

Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coli

artículo científico publicado en 2019

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

artículo científico publicado en 2015

Letter: reproducible evidence shows that exclusive enteral nutrition significantly reduces faecal calprotectin concentrations in children with active Crohn's disease

artículo científico publicado en 2017

Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass

artículo científico publicado en 2018

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems

artículo científico publicado en 2019

Mammography Phantom Studies Using 3D Electrical Impedance Tomography with Numerical Forward Solver

Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities

artículo científico publicado en 2016

Metagenomic Evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System.

artículo científico

Metagenomic Sequencing Unravels Gene Fragments with Phylogenetic Signatures of O2-Tolerant NiFe Membrane-Bound Hydrogenases in Lacustrine Sediment

artículo científico publicado en 2015

Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure

artículo científico publicado en 2016

Molecular Diagnosis of Vaginitis: Comparing Quantitative PCR and Microbiome Profiling Approaches to Current Microscopy Scoring

scientific article published on 26 August 2019

Moving interfacial boundary estimation in stratified flow of two immiscible liquids using electrical resistance tomography

Multidirectional Scattering Models for 3-Dimensional Ultrasound Imaging

artículo científico publicado en 2013

NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

Neutral Processes Dominate Microbial Community Assembly in Atlantic Salmon, Salmo salar

artículo científico publicado en 2020

Next‐Generation Sequencing to Identify Lacustrine Haptophytes in the Canadian Prairies: Significance for Temperature Proxy Applications

artículo científico publicado en 2019

Nonstationary phase boundary estimation in electrical impedance tomography based on the interacting multiple model scheme

Nonstationary phase boundary estimation in electrical impedance tomography using unscented Kalman filter

Optimization strategies for ultrasound volume registration

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab).

artículo científico publicado en 2016

Particle Swarm Optimization Technique For Elliptic Region Boundary Estimation In Electrical Impedance Tomography

Phase boundary estimation in electrical impedance tomography using the Hooke and Jeeves pattern search method

Phase boundary estimation in electrical resistance tomography with weighted multi-layered neural networks and front point approach

Policy-Based Management in Ad hoc Networks Using Geographic Routing

Reply

artículo científico publicado en 2019

Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants

artículo científico publicado en 2021

Response to Kaakoush et al.

artículo científico publicado en 2016

Reverse transcriptase enzyme and priming strategy affect quantification and diversity of environmental transcripts

scientific article published on 13 April 2020

SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities

artículo científico publicado en 2021

Sensitivity map generation in electrical capacitance tomography using mixed normalization models

Seqenv: linking sequences to environments through text mining

artículo científico publicado en 2016

Size Shapes the Active Microbiome of the Methanogenic Granules, Corroborating a Biofilm Life Cycle

artículo científico publicado en 2020

Systems biology approach to elucidation of contaminant biodegradation in complex samples - integration of high-resolution analytical and molecular tools

scientific article published on 01 August 2019

Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgae

artículo científico publicado en 2021

Terminal restriction fragment length polymorphism is an "old school" reliable technique for swift microbial community screening in anaerobic digestion

scientific article published in Scientific Reports

The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool.

artículo científico publicado en 2018

The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred

artículo científico publicado en 2017

The effect of DNA extraction methodology on gut microbiota research applications.

artículo científico publicado en 2016

The mannose receptor (CD206) identifies a population of colonic macrophages in health and inflammatory bowel disease

artículo científico publicado en 2021

The potential of sedimentary ancient DNA for reconstructing past sea ice evolution

scientific article published on 24 June 2019

The reduction of faecal calprotectin during exclusive enteral nutrition is lost rapidly after food re-introduction

scientific article published on 25 July 2019

The skin microbiome in psoriatic arthritis: methodology development and pilot data.

artículo científico publicado en 2015

Three-dimensional ultrasound imaging

artículo científico publicado en 2010

Treatment of Active Crohn’s Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition

artículo científico publicado en 2018

Unscented Kalman filter approach to tracking a moving interfacial boundary in sedimentation processes using three-dimensional electrical impedance tomography

artículo científico publicado en 2009

Lista de obras de Umer Zeeshan Ijaz

16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated PCR Ribotype 078

A clinical system for three-dimensional extended-field-of-view ultrasound

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

A role for tetracycline selection in the evolution ofClostridium difficilePCR-ribotype 078

A sedimentary ancient DNA approach to elucidate the Labrador Sea paleoceanography over the last ~130,000 years

Alopecia areata is characterized by dysregulation in systemic type 17 and type 2 cytokines, which may contribute to disease-associated psychological morbidity

An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights

An automated identification and analysis of ontological terms in gastrointestinal diseases and nutrition-related literature provides useful insights

Analysis of 61 exclusive enteral nutrition formulas used in the management of active Crohn's disease-new insights into dietary disease triggers

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines.

Bacterial community analysis in upflow multi-layer anaerobic reactor (UMAR) treating high-solids organic wastes

Bacterial diversity along a 2 600 km river continuum

Bacterial diversity along a 2600 km river continuum

Bile salt metabolism is not the only factor contributing to Clostridioides (Clostridium) difficile disease severity in the murine model of disease

Binning metagenomic contigs by coverage and composition

Biokinetics of microbial consortia using biogenic sulfur as a novel electron donor for sustainable denitrification

Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors

Carboxylic acids production and electrosynthetic microbial community evolution under different CO2 feeding regimens

Cold adaptation and replicable microbial community development during long-term low-temperature anaerobic digestion treatment of synthetic sewage.

Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations

Comparison Of The Human Gastric Microbiota In Hypochlorhydric States Arising As A Result Of Helicobacter pylori-Induced Atrophic Gastritis, Autoimmune Atrophic Gastritis And Proton Pump Inhibitor Use

Comparison of Clinical Methods With the Faecal Gluten Immunogenic Peptide to Assess Gluten Intake in Coeliac Disease

Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use.

Comprehensive Longitudinal Microbiome Analysis of the Chicken Cecum Reveals a Shift From Competitive to Environmental Drivers and a Window of Opportunity for

Comprehensive longitudinal microbiome analysis of the chicken cecum reveals a shift from competitive to environmental drivers and a window of opportunity forCampylobacter

Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab

Concentration distribution estimation of fluid through electrical impedance tomography based on interacting multiple model scheme

DNA extraction and amplicon production strategies deeply inf luence the outcome of gut mycobiome studies

Dietary Strategies for Maintenance of Clinical Remission in Inflammatory Bowel Diseases: Are We There Yet?

Differential amplicons for the evaluation of RNA integrity extracted from complex environmental samples

Differential ratio amplicons (Ramp ) for the evaluation of RNA integrity extracted from complex environmental samples

Directional Algebraic Reconstruction Technique for Electrical Impedance Tomography

Disinfection exhibits systematic impacts on the drinking water microbiome

Diversity Converges During Community Assembly In Methanogenic Granules, Suggesting A Biofilm Life-Cycle

Effect of laser irradiation on cell function and its implications in Raman spectroscopy.

Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

Electrical Resistance Imaging of Two-Phase Flow Through Rod Bundles

Electrical resistance imaging of a time-varying interface in stratified flows using an unscented Kalman filter

Estimation of time-dependent heat flux and measurement bias in two-dimensional inverse heat conduction problems

Exploration of marine bacterioplankton community assembly mechanisms during chemical dispersant and surfactant‐assisted oil biodegradation

Extending SEQenv: a taxa-centric approach to environmental annotations of 16S rDNA sequences

Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition

Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans.

Galacto-Oligosaccharide has no Effect on Glucose Tolerance, inflammatory Markers or Intestinal Permeability in well-controlled Type 2 Diabetes

Host-microbiome interactions in human type 2 diabetes following prebiotic fibre (galacto-oligosaccharide) intake

IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

Inflammation associated ethanolamine facilitates infection by Crohn's disease-linked adherent-invasive Escherichia coli

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

Letter: reproducible evidence shows that exclusive enteral nutrition significantly reduces faecal calprotectin concentrations in children with active Crohn's disease

Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

Long solids retention times and attached growth phase favor prevalence of comammox bacteria in nitrogen removal systems

Mammography Phantom Studies Using 3D Electrical Impedance Tomography with Numerical Forward Solver

Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities

Metagenomic Evidence for the Presence of Comammox Nitrospira-Like Bacteria in a Drinking Water System.

Metagenomic Sequencing Unravels Gene Fragments with Phylogenetic Signatures of O2-Tolerant NiFe Membrane-Bound Hydrogenases in Lacustrine Sediment

Microbial community redundancy in anaerobic digestion drives process recovery after salinity exposure

Molecular Diagnosis of Vaginitis: Comparing Quantitative PCR and Microbiome Profiling Approaches to Current Microscopy Scoring

Moving interfacial boundary estimation in stratified flow of two immiscible liquids using electrical resistance tomography

Multidirectional Scattering Models for 3-Dimensional Ultrasound Imaging

NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

Neutral Processes Dominate Microbial Community Assembly in Atlantic Salmon, Salmo salar

Next‐Generation Sequencing to Identify Lacustrine Haptophytes in the Canadian Prairies: Significance for Temperature Proxy Applications

Nonstationary phase boundary estimation in electrical impedance tomography based on the interacting multiple model scheme

Nonstationary phase boundary estimation in electrical impedance tomography using unscented Kalman filter

Optimization strategies for ultrasound volume registration

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab).

Particle Swarm Optimization Technique For Elliptic Region Boundary Estimation In Electrical Impedance Tomography

Phase boundary estimation in electrical impedance tomography using the Hooke and Jeeves pattern search method

Phase boundary estimation in electrical resistance tomography with weighted multi-layered neural networks and front point approach

Policy-Based Management in Ad hoc Networks Using Geographic Routing

Reply

Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants

Response to Kaakoush et al.

Reverse transcriptase enzyme and priming strategy affect quantification and diversity of environmental transcripts

SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities